RNA id: XM_034309096.1


Basic Information

Item Value
RNA id XM_034309096.1
length 2478
RNA type mRNA
GC content 0.41
exon number 8
gene id pnpo
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12378478 ~ 12383567 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAATTACCGTAATTACTAGATGACAAACCGGACGTTCTCCTCGGAGCTGTTCACGTACGCCAAAATGAATCCCGACGCTTTACGTAAAGATGTTGTGACGTGGTTACGTCACGGCCATGACAGCATGAGACGCTTGTTCAGCTTCAGCGCATTGAAGTTTATCAGCAAAACTCAGCAAATCATTCCGCCTGGATATTCCCTGTCACTTTCCCTCCGAGCCGTACCTGCTTCCTATTTCCGCACCACATCGACGGATAACAGCAAACAAATGGATCTGAGTGACAtgagaaagaaatataaaggCGATGAGGAGTCTTTCGAAGAGGATCAGCTTACTTCCCTCGACCCTATAAAGCAGTTTGGTGAGTGGTTTGATCAAGCAGCAAAGTGCCCTGAAATTGGTGAGGCCAACGCCATGTGCCTTGCAACAGCATCCAAGGACGGGAGGCCTTCTGCTCGAATGGTGCTGCTGAAAGGTTACAGTAACGAGGGCTTCCGCTTCTTCACAAACTATGAAAGCCGTAAAGGTAAAGAGCTGGAGATGAATCCCCATGCCTGTCTTATGTTTTACTGGGAACCACTGAATAGGCAGATTCGTATTGAAGGTACTGTAGAGAGAATCCCACGTCAGAATTCTGCTGAGTATTTTCATTCGAGACCCAAGAGCAGTCAGATTGGTGCAGTTGTGAGCAGGCAGAGCAGCGTGATACCCAACAGACAGTACCTAAGAGAGAAGAATGCAGAGTTGGAGGAGAAATACAAGGACTCAGAGGTCCCCATACCGGATTACTGGGGAGGCTACCTTGTCAAGCCAAACCTGATTGAGTTCTGGCAAGGCCAAACCAACAGACTGCATGATCGTATTGTTTTCACAAGAATCAAGGAGGGCGAGACTGAACTTCGAGAGATGCAGCATCAGGCTGAGGGAGGTTGGGTGTACCACCGCTTAGCACCCTGACAGGAAACCCTTATCTTTTCACTCAAGAGAGTCATCATTGTAGACTAACTATAGTACATTAGGAAGTTAAGTGAAACACAGatgctttttattttggtaAGATTCATGATGTGCCATTTTGCTGTCAGAAAGTTGTAGTTTTAGACAAATTGTTTTTGTACCGTAAAAtgaatagttttaaatattttagtctGTAATTTGAGGTTCTTCAATAGGATATTGCTTGATATGATGGCTGTGCTACATCCTAAACATCATAAactaacacaaacaaaaagtagGCGACATTTTAACTTATTATGGTACCTTGTATTTGAGTAGATTTTGTTTTCTGTCAAACATAAAGCTGATCTAGAACCCCTGAGAGTTGTGGTTTGTTATCATGCTCATTTGCACATTAGTATTGCAAAGGTCAGCATGGTGATAATGATACACTGGGATGCTCTAATTGGGTGATATTGTCTTTAATGTAGATAATCGCATCATTTaagttaaaatacaatttacaattgtgctttcattatttcattttttagttACAACTCTAATAGCAAAGAAATAATGACCCAGTGATAGCTCATGCTGATCTGACCCACTAGGAATAACGGTGATGAATTCGTCTGAATCCGTGCTGCCAGATTACAACCATAACTAGAAGAGGCTACATGTTTACCGCTGGGCCACTTTCAGCCCAAAATTGAAATGCAGCACAAGCATTGTTGCATTTCATCCATATTCCATAAGTACATTTGGACCAGATTTCTTTGCTATTACAGCAGTAATATCCCTAAATGGAATACCTGTAGAAACTTCATTTCTGCAAGTTATGACTGCCATAAgatagaaatgtaaatgattttacCTGGTAAAGGATCTCAACTGGTTCTACAAGAAAATTTCTGCCGGTCAAATAGAAATGAACAGAGACCGCTACCAACCTTTTTTATCCATGAACATTCAAGTATTACTGTAGTGCAGCAAGTTCCTCTAGCGGCATACAGACGGTGAcaaattaatggaaaaaaattctACAAGTCCCTGGAACTGTACTGAAGTGATGAACATCATTCCTCTAAAATTATATTCCCTcataggtgttcagttgagttGAAATCTGGTGACTGTTAAAGCCAtaccatttgatttacatcatttttctGGATAAAGGTGATGAGTCAGAATAACCCAAACCCAAACCAAATctcccacagcataacagagccactggaatttcctttaatttgtcccCAGCATGTGTTTGTGGATTTAAGAGAAATGTGTTGATCAGCAGTTGGTAGGCCAGTAGATGGCAGTGCTATAGCAAATGATACTGCAGTTAAACCCTATGTGCAGTTTATAGAACAGTTTTTGTCAGTCACTTGATTTTATTAGGCTCATTTGATAAAACAGTAGGCAAACAGTAGGCAACACCAGCACCAAAGTATATCTGTTGTATTTAACCACATGTACAATATCTGCCCTTTGTAAATATCCTGGTGTATTAAAACATTGAAAATGG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008615 pyridoxine biosynthetic process biological_process
GO:0010181 FMN binding molecular_function
GO:0004733 pyridoxamine-phosphate oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231049 lncRNA upstream 4509 12374010 ~ 12374280 (+) True G195084
TU231048 lncRNA upstream 7504 12371056 ~ 12371285 (+) True G195083
TU231012 lncRNA upstream 129034 12249060 ~ 12249755 (+) True G195047
TU230980 lncRNA upstream 202670 12174394 ~ 12176119 (+) True G195016
TU230966 lncRNA upstream 233582 12145001 ~ 12145207 (+) True G195002
XR_004579205.1 lncRNA downstream 68326 12451893 ~ 12453678 (+) True LOC117598562
TU231214 lncRNA downstream 166567 12550134 ~ 12550360 (+) True G195225
TU231292 lncRNA downstream 259701 12643268 ~ 12643526 (+) True G195287
TU231306 lncRNA downstream 274538 12658105 ~ 12658323 (+) True G195301
TU231526 lncRNA downstream 460758 12844325 ~ 12844561 (+) True G195512
XM_026915883.2 mRNA upstream 18146 12348960 ~ 12360643 (+) True tbx21
XM_026915940.2 mRNA upstream 61685 12269685 ~ 12317104 (+) True tbkbp1
XM_026914596.2 mRNA upstream 193751 12179023 ~ 12185038 (+) True cdk5r1b
XM_026915677.2 mRNA upstream 236046 12141560 ~ 12142743 (+) True LOC113527660
XM_026915250.2 mRNA upstream 313236 12062808 ~ 12065553 (+) False LOC113527436
XM_026914609.2 mRNA downstream 7226 12390793 ~ 12398133 (+) True cdk5rap3
XM_026914825.2 mRNA downstream 23786 12407353 ~ 12415790 (+) False nfe2l1b
XM_026914827.2 mRNA downstream 23786 12407353 ~ 12415790 (+) False nfe2l1b
XM_026914826.2 mRNA downstream 24294 12407861 ~ 12415790 (+) True nfe2l1b
XM_034309620.1 mRNA downstream 39183 12422750 ~ 12430535 (+) True phkg2
trnaq-cug_16 other upstream 1092521 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 2314163 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 2743722 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2864954 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2866158 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 89116 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1099734 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1099734 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 4472203 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5193716 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile