RNA id: XM_034309521.1


Basic Information

Item Value
RNA id XM_034309521.1
length 6579
RNA type mRNA
GC content 0.51
exon number 39
gene id pcdh15b
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7047571 ~ 7232075 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacatacatacactcaccggtgcgtgtgtgtctccTCCGTAATGCGATTACTCTCGTGTCGTGGGGATTTAAGGGTCATTTCGGAAAATCGTTGCCAGCGGCCGTGGAGGTAGAATAGGACATCTGGAcaactcttttctttttttatttatttattttttttttcttggactGAAATTAGCTGGAGAGTTTGAGCGTATAAAGCCGCCTATGGGAGCGTTTACAGATGTAGCAgggagtaacacacacacacacacacacacacacgcacgcacgctcGCTCGCCCgaacgcacgcacacacacacacacacacaggcgcgcGCGCGCAGAGGGCGCTAGTGTGTGGCGGAGGAGCATTTCTCCATTTCTACAGGATGTGCTCGCTTCTCAGGCACTTTGACGCCGTGTCCGAGGGGGATTACCTGCCTTTCCAAACTAGCATGGTAGGCCGACAGTAACGCTTAGGGAAGATGTGCCAGCAGTCGTGGCTCTTTAAATGGCTGAGAATCGGCATTGGTGTCCTCTTAGTCACAGCTTCCAGCAAGTCTCAGGACTCAGATGACTGGCAGTATGAGGaGTGCAAGCTGTCCAGAACCGGTCCACCAGCCACCATAGTAGCCATAGATGAAGAGAGTCCTAATGGGACTGTCCTGGTAGAGAACATGCAAATCAACGGCCGGGCGGAAGACCCTCACCGAActatctctttatctctgaGAGACAACTATGGCCACTGGGTAATCCTGGACCCTGTGAAACAACGGCTTTACCTTAACAGCACTGGAAGAGTTCTGGATCGTGATcctCCTTCCTACATTCATTCCATTGTGGTGCAGGTCCAGTGCACCAATGAGCTGGTTGGTACAGTGATTCTTCATGAGGTGCGGATCGTTGTGAGGGATCGTAATGATAACCCTCCTCGTTTCCAGCAGCCACGGTACTATGTGGCTATTAATGAGctgaCTCCTGTTGGGACCACCATCTTCTCAGGCTTCAGTGGGAATAATGGTGCTGTTGACATTGATGATGGACCAAATGGACAAATCGAATACACCATTCAGTACAATCCTTATGACCCGACTGCTAACAGAACCTTCGACATTCCTCTCACCCTGTCTGGCTCTGTggtgctgagagagagactgaactaTGAAGAGATCACACGCTACCTGGTTATCATCCAGGCCAATGACCGAGCGCCTGACCCTAAAGAGCGACTGACTGCCACCACAACACTGACGGTGGATGTGCTAGATGGAGATGACCTGGGCCCGATGTTCCTGCCCTGCAGCCTGGTCGAAAACACCCGTGACTGCAAGCCGCTTACCTACAGAGCCACCGTGCTGGAGCTTGCAGACCCAAGCAAAGTGAACCCAGTGAACGTGACTCCTCCAATCCAGGCCGTGGATCAGGACAGGAACATCCAGCCACCATCCGATCGCCCAGGGATCCTCTACTCCATCCTCATCGGCAAGCCTGCATTCTATGCTGAATACTTCTCACTAAACAGCAGCACAGCCGAGCTCAGACTCTTGCAGCCTATCAGCCGTGAGCAGCACCAACGATTCGACTTGATAATCAAGGCGGAGCAAGACAACGGACATCCACTCCCAGCCTTCGCCAGTCTCCACATCGAGGTACTGGATGAGAATGACCAGGCGCCTTATTTCCAGGCAAACACCTACCAAGGCTTCATCCTTGAATCAGCTGCAGTTGGCACCACAGTCTCCAGCAACACCAGTCTCTCCTCTCCACTTACCATCGTTGCTCTGGATAATGACACTGAGGAGACCAAAGATCCCATGGTGCgaatctccctggacaactacGAAAGCATCTTTGCGGTGACACCCAGTGGGATTGCGCGCTACCTGACACTCCTAAAGCCCGTGGACCGTGAAGAGCAGAAGAGTTACAGCTTCACAATGATGGCCTCAGATGGGGTTCACCAGAGCTCACCAGTTGCAGTTAATATCACGGTGATCGATGCCAATGACAACACGCCAACCTTCCCCAACGTCTCCTACAGCGTCAGTGTTTACACAGACATGCAGGCCGGGGAAGTGGTATTATGGCTCACAGCTTCCGATACTGATGAGGGTCCCAATGGCCTGATAAGCTACAGCATTGTGGCAGGAGCTCGGGGCCACTTCATCATCAATAACCGAACAGGACTGATCAGCGTGGCACCTGGAGTCAACCTAACCGTGGGCAGCTCTTATGCCCTCACTGTCAAGGCAACAGATAATGCAGCTATTGACCAGAGAAGGAGCTCCATCACCACCGTGTACATTGAGGTGTTGCCCCCGAACAACCAGAGCCCCCCACGCTTCCCCCAGCTCCTCTACAGCCTGGAGATCAGCGAGGCCATGAGGAGCGGAGCCACACTCCTCAACCTGCAGGCAACAGACCGAGAAAAAGATCCCATTATGTACAGCATCCTCAGCGGAGATCCTGATAACATCTTTGAACTCAATCAAACGTCGGGTCTCTTGCTCCTGGGAAAGATGCTGGACAGAGAGCGCACGGATCGCTACACACTGATCGTTTCTGCCTCCGATGGCAGACCGGATGGGACCTCAACTGCCAAGGTTAACATACTGGTGACTGATGTGAATGATAACGACCCCATGTTTGATCCTCTGCTGCCTCAAAATCTCACCGTTCTGGAAGAGCAGGCAAATGCTTTTGTTGGTCAAGTAAAGgccaTTGATTCTGACCTGGGAGTGAATGGGCAGGTGCGTTACAGGCTGCTGAGCCATGCTGACCTCTTCCGGATCAGCGCCGATGGAGGCATCTGGACAGCAGTGGCTCTAGACAGAGAGCAGAGGGAGCATTATGAGCTAGTGGTGGAGGCGTGGGATGCGGCGCCGGACCCCCGCAGAGCCTCCATCACACTCTCCATCACAGTGCTGGACATAAATGATAATAGCCCAGTGTTCTCCCAGCCATCCTACAGCGTCATTCTGCCAGAGAACAGCCCACCAGACATGGCCATCCTAAACCTTACTGCTCTAGATGCAGACCTGAACTCGAACATCACCTACCGTATCAGGACGACAGAGGCCAGGAAGCTCTTTGAGCTAAACCCTGTTACAGGGGAGCTGAAGGTGCTGTACACACTGGACTTTGAGAAGCTTTCTCCTGAGGAGACAACACACACCTTCGTGGTGGAGGCAGTAGACAGCACTGGCAGCATGCCACCTGGTTTAGCCACTGTCACAGTCACGATAACGGACATGAACGATTTTTCGCCCGTCTTCAGCCAAACCTTGTATCAAGGCATGGTGGCGCCCAATGCAGTCAAAGGGACCGTCGTGACCACTGTGCAGGCTGAGGACCAGGACAccaagGGCACAGGAGCCAGTCGAGTGCACTACAAAGTGGACTTGGAGCACTTCCCCTACAGTGCCAGCATCTTTGAAGTAGTAGAGGATACAGGAAATATTCTCACCAGGGTCAATCTCAATGAGGAGCCTAACACTAAATTCACTCTGGTGATTATTGCTTATGATGACGGGAAGCCGGTGAAGTCCAATAAGACCCTGGTGGAAATTACCGTCCTGCAGCCCTCTGCCATTCCCATCTTCACTCAGGAGGAGTACAGgttCCCACCAATCAGTGAGAAAGCTCCTGTAGGGAGGGTGGTCGGGGTCATCCTGGCTTCTGCCATAAATCAGAGCATTGTCTACTCCATCATTGAAGGGAATGAAGGGGGTGAATTCAGCCTGAACAACCAGACCGGAGTGATCAGCACAGCTAAGCCCCTGGACTTTGAGAGCAACAACAGCTATGTGCTGCGTGTGGAGGCTGATTCCATGAGAGTGATCTCATCCAACCTCCGGGCTCCCGCAAAAAGTAACACAGCCAAGGTGTTCATCGAGGTGCAAGATGAAAATGACCATTCACCTGTTTTCACTAAACAGCTCTACCTGGCTGGGGTCACAGAGGACGTTAAGACATTCACATCTGTCCTGCAGGTTGAGgctCTGGATAAAGACACAGGGAATTATAGTGCCATGAAGTACCGCCTTATCATCCCTCCCACGGCAGAGGGGAAGGACAGCTTTGTGATCGAGCCTTACACGGGCATCATTAAGACTGCCATCATGTACCGCAACATGCGCCGCACCTACTTCAGATTCGAAGTCATCGCCACTGACAACTACGGAGAGGGCCTGAGCAGCAGTGCGCAAGTGGTGGTATCCGTGGTCAATCAGCTGGATATGCAGGTGGTGGTGTCCAATGTGCCCCCGACTGTGGTGGAGCAGTACAAGGAGCAGCTGATTGGTATCCTGGAGCGTTACGTGCAGGACCAGATCCCGGGTGCCAAAGTAGTAGTGGATTCCATTGGGCCACGGCGGTACGGAGAAACCTACGAACTGGAAGACTACTCTAGCTCAGACCTCATGGTGTATGCCATCGACCCTATGACCAACAGGGCTATCTCCAGACAGGAGTTGTTCAAgtttctggATGGAAAGTTACTGGACATTAATAAAGAATTCCAGCCATACCTGGGCCGCGGTGGCCGCATCCTGGAGATCCGCACACCCGACATCGTGCAGAGCGTGAAGAAAGCCGTGCAGTCATTGGGCTACACAGAAGGAGCACTGCTGGCCCTCGCTATCATTATCGTTATTTTCTGCATCCCCGCCATCTTCATTGTCGTCATTACATACCGACAATTTAAGGAACGACAGGCTGAATGTGCCAAAACCGCCAGGATCCAAATGGCTCTCCCAGCTGGCAAACCTGGAGGCATTGCTGCTAGCAATCTGTATGAGGAGCTAGGTGACAACACCATGAGAGGGTACGGACATCAAGAGCAACAGCAGTTGCTTCGGCCCTCTCTCTTGAGACCAGAGGAACTATCTATGGAATCAGGCATCGACCCAGGGCAAGACTATTATACACAGGATTACTATAATTATGACCacggATATGACTTGCCTCAGTATGGCAGTCGCAGGAAGCTGATCTCTCCGGCGGGAACATATGATGAGTACGGTGAGGTGATTGTCGAGGATGATGGCAGCTATTATTACAGTCCTCATGAATCAGAAGGAGAGGTTTCCAGGCAGGCTAGAAGGCTGAGTCAGACTCTTCACAGACCTCCCAAATTTTCTCTGGAAGATCATGTTCCCAGACCAGAGCAGACCCAGTCTGATCCAGCAGGGGAGACTGTGTCTTTTCACAGTTCAAATCCTGTGATCAATCTCAGAACAGTGATGAAAATCAACAAACTGCTTGCTGCAAGGAAGGCCTCTGGGCCACCAATGCCTTTCCACCCACCATGGAAGAAGAATCGAATATTCCCAATGATGGAAAAGGCGCAAAGTGCAGAGCCCACTAAACCGACTCAAGGCTCTGATAGCTCGGAGAGCGGTACAGCCATTGATGGTATCTTCTTCCAATCGAAAGAAGGAAAATCCACAGGGGAAAAACTATTCTCCAAACAGCTTCACACTCACAACAACTGTCAGAGCAACACAAGCAGTAACACAGATAGCTCAAGTGATGGGAAGACATCGGTTTCCCAGGAAAGCAGTGATTTGGAAAAGAAGCCATATGGCTTTGTTAGCAACAGACAACAATCTGAGAGCAAGGTAGAGACTGTAAATCCAGGTGCTTTTCTGGACCCCTATTTAGACACATGTGCTGTATCATCTATATTATCCCAACATCCTTATTCAAACCAACAAAATGTGGCATATATGACCAACTTCGATTCAGACAAAGAGCAGGAAATTTCTGAGGAGTCAGAGACTGAGCAAGATGATTCTGAAGGTGAGTCCACGACACATACGGAGCAAGACTCAGAGACAGACACTGATACTGAGAGCGAGACGGAAAAAGAGTCAGAGAGTGATAAAGAGTCAGAGGATGAGAATATTTCAGGTAgtgagaaagaggcagagagtgAGGATTTATCAGAGTCATGTTGCAAAGTCACTGGCACCCAGGAGTTTGTGAGGTCTGTTTTGCAGACGATGAATGAAACACAGTCTTCTAAACCTCGATTTACATCCAGCATAGCAGAGATCAGTTCTACAGTAGGCTTCAACTTTACACACAATGCTTATAGAATATCTGAAGAGAACACGCATAACGGTAAGGACAAGAATGAACAGAAGAAGGGGTCAAAGAAGGAAGATGACTCTGAGACCAGAAACAAGGATCCTAAACCTTTAATGGGTCAAGAAAAGGACCTTTCTAAGAGTAGTAAAAGCCAGAGCAAGAGCAGCTCCTCCGCAGGTAGCAGTTTACAAGGCACCACAGACAATGGTAATCTCCCACCTATAGctgaggatgaagaagaggaaaTGACATCTGCAGGATCGCTCAGGAGTAGTCTTGGTAACAAATTTCAGGGGTCTGCAAGTGGAGCTGGAAGTCCAGAAGATGAAAAGGAGGATTCAGACACCGATGACATTGTTACAGCTGACTAATCTGGCTTGATGCCTTCTCATTTGGTAGAAAGAAGAGAATCAAGTTGGTGGTGGATCGTGAGTACGAGACCAGTTCAACAGGAGATGATAGTGCTCCAGAGTCCCACCGAAACCGGTTGTCCAAT

Function

GO:

id name namespace
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0001654 eye development biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227404 lncRNA downstream 234375 6813165 ~ 6815435 (-) True G192074
TU227405 lncRNA downstream 234375 6813548 ~ 6815435 (-) False G192074
TU227407 lncRNA downstream 240052 6808205 ~ 6809758 (-) True G192075
TU227408 lncRNA downstream 241015 6808205 ~ 6808795 (-) False G192075
TU227392 lncRNA downstream 249734 6799642 ~ 6800076 (-) True G192062
TU227786 lncRNA upstream 167952 7400027 ~ 7400363 (-) False ipmkb
TU227790 lncRNA upstream 196512 7428587 ~ 7428883 (-) True G192437
TU227943 lncRNA upstream 349283 7581358 ~ 7583165 (-) False ccdc6b
TU227946 lncRNA upstream 397236 7629311 ~ 7630373 (-) True G192545
TU227929 lncRNA upstream 489930 7722005 ~ 7740008 (-) False ank3b
XM_034309520.1 mRNA downstream 201844 6836437 ~ 6847966 (-) False a1cf
XM_026915451.2 mRNA downstream 201850 6836437 ~ 6847960 (-) True a1cf
XM_026915452.2 mRNA downstream 201853 6836437 ~ 6847957 (-) False a1cf
XM_026915453.2 mRNA downstream 201855 6837424 ~ 6847955 (-) False a1cf
XM_026915154.2 mRNA downstream 283710 6756785 ~ 6766100 (-) True aarsd1
XM_026915386.2 mRNA upstream 167925 7400000 ~ 7418378 (-) True ipmkb
XM_026915835.2 mRNA upstream 189891 7421966 ~ 7427834 (-) True ube2d1b
XM_026914632.2 mRNA upstream 203434 7435509 ~ 7442712 (-) False zgc:171971
XM_034309437.1 mRNA upstream 203434 7435509 ~ 7442712 (-) True zgc:171971
XM_034309325.1 mRNA upstream 314988 7547063 ~ 7560750 (-) True fam13c
XR_004579320.1 other downstream 455420 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 1273790 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 1435856 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 1576340 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 1747605 5302113 ~ 5302205 (-) True trnai-uau_5
trnap-agg_9 other upstream 1226252 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 1243184 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 1615587 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 1844714 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 1845043 9077118 ~ 9077199 (-) True trnal-uag_4

Expression Profile