RNA id: XM_026915375.2


Basic Information

Item Value
RNA id XM_026915375.2
length 5115
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC113527495
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 18421553 ~ 18429688 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCATGAGCAAACAGAGCACAGCATACCCCaaggaggaaagagaaaagaacgTAGAACAACTTGTAGAAGTCAACATTTGTGAGCACTGAAGAACCAGAACAGCAAACCCAGCACATCATTATGGCATCTGATCAGCCTTCTTTACCTCCAGGTGACCCTGTTTGCCCAGGGTGTCAGGCCGAGGGGTCGCTCCTGCTGCCCTGTGGACACAGCTTATGCCAGTCTTGCTTACAGTTGTGCCAGCTCGAGCTAGGACATGATCAGCAAAGATGCACTGAGTGCTATGGACGAGAGCTGCTTGACAACGTCCTGAAGGGACTGTTTGACTCCATATTTCAAGGTCAACCTCGACGGGACAGGACCCAAGCCGAGCTGGGGCTAGGCTTGATCGGGGAAGACAATGCCAGGGGTGAGGGTGGTAAGGTGTGTCCTAGGCATGGTGACAGACTGACTCTGTTCTGCATGGAGGACGAGGAGCTGATCTGTGGTCAGTGCCAGCGAGAAGACCATGAGAGTCACGATTGTAATGGTACAGAGGAGGCAGCTCAGGAGTGcaagAGAGAGCTGAGGTTTGCACTGAGGCCCTTACAGGAGAAGCTAGAGACCCTAAACACAGCCAAACAAATCTGCCAGGAGACAGCAGATCACATCAGGAGGCAGACCCAGCATACAGTGCAGCTGATAAAGGCAGACTTTGAGAAGCTGCAGCAGTTCCTCCGGGACGAGGAGGCATCCATGCTCACAGCTCtgaaggaagaagaggagcagAAGAGTCGCAAAATGAAGGAGAAGATAGACAGGCTAACAGAGGAGATTAAGTCTCTGACTGAAACCATTAACTCCACTGAGGAGGCCATTGCTTCTGAAGACTTTGAATTTCTAAAGAACTATAAGAAGGCGTCTGAATGTTACAGAGTGGAATGCACACCACAGGATCTTAAAGAGATGAGCGGAGCTCTGATTGATGTGGCCAAACACCTGAGCTGTCTCAAATTCAGAGTCtgggagaaaatgcaaactgtCGTCACATTCACTCCAGTGACCCTTGACCCCAACACGGCAGACGCGTACCTCTCTCTATCTGATGACCTCACTGTCCTGCGCTACACAGACGAAGAGCAGCAGGTACCCGATAACCCAGAGCGCTTCTGCTACTACGAGTGTGTGCTCGGGTCTGAGGCCTTGGGGACAGGCCGCCACAGCTGGGACGTGGAGGTAGGCGACAGCACTGAGTGGGCACTCGGGGTGGTGTACGACAGCGTGCAACGGAAGGAGTGGTTCCCGCCCAGTCCTGAGCACGGCATGTGGACCATGTGCCTGCATGGAGGTCACTATCGGGCACCAAACTCCACCAGTGATCCGATCCCAGTTaagaagaaaccacaaagagtGCGAGTTCAGCTGGACTGGGATGTGGGAAGGGTCACGTTTTCAGATGCTGCAGATAACACACTAATTTACAGGTTTAAAGCCAAGTTCACTGAGAAGCTCTATCCGTATTTCTCTAACACCTGTAAAAGGCATCCGCTGCGCATCCTTGCTGAGAAAGTGTCCGTGTACACAGAATAGCTCAGGAAACACCACCCTGAAAGTACTGGTAGAATAAAGTAGCAGAATAATGCCACATGTATAAGAAGACAGATATGAATGAAGCCAGAAATAATCTGAAATAGGAATGTAATGGTACATCCTATAAGCATATCTGAAATAACTATTCTTAAGTTAATGTTATGGTATAGTGATTATATAATCACAGCAAGGTAAAACTGTATTTCTACATTGCTTTAAAGTATATACTAAAGGCTTAATAATCCTCCTAAACACTCTATTTTCCTACAGAAATAATGCAGCACTTTCACTGCCAATGCAACGGCATATTATTTAGTGACCCCCTCTTTAAACTATGGAAAAATATAGCCTTtgctatagaaaaaaaaagaaaaaagaaagaaaacatgatctGAGCACAATCTGACACTGATGCTGGGTAtcagtacttgtactaggagtGAGCAATATTATAATGAACTATGgttatcatgataaattacatCATGATACACTTTTCAGAGAGTATTATTAGAACTGTTTTGTTAtaggtcatttttttaaagaaaaattttgCAATTAAGTGCattcttaattaaaaaagagtTTTATCTAGATTTATCCTCACTTAAATTGACATCATAAGATCATAAGATATGCACTTTGCAATACGCTGAAAAGGTTTCCTGAAACCCTGAAAACAAATTTTAGATATTATTCAATACAATACTGAGCTATAGGTTTAGGCCTTcaaatctatttatatataatatatgtgccatatatgcaaatatatgaaTAGAATTTGTAATGTAAAGTTATTGGAATGTCTGCACAAATATAGAGCTTTTTCAGCTTTAACCTGCTCACCTATTTCTTAATATTAGGTGAACTGCTCAAGTAATAACCATGCTGACTCTGCtcaagtaataataatgattaattcCTCTTGCATTTGTGATGACATTTATGCATGAAACAGGCACATACTGAATGTACATTAGTGCAAAGCACTATTATGCTTGGACATGGAGGTAGGAACTGCATGCAGAATATTAATTTTACTTCCTAATCACTAAGAACAGTGATAAACAACCTCAACTGTGTAGATGTGATATGGCAATGCATGCATGGACATGCAGCATATATATAGTGCTGTGAAAACTATAAGCACTTTGCAGAAATGTAGTTTAAACTGACTTTGAGGATTCTACAGATACATCTACctgttattactgtattatgACATAGCAgaattaaataactaaaaatggcAAGCAATATACATCTATCTTTCTTATAGTGTTATATATGCAATCATTTTATAAGCCTTAATGATGATTAATAACTATATATCAAAATTGCTGCTCTTTGCTTAACCAAAGGTCCCTGGACAAATCTAAAACCGATTAACTATAACGTAAATAAAGTGATGAAATGGCCTGTGTTTACACTGGGCTCTTAAGACAAGTATGTCCTCACATATGCACCTGTCTCTTCTCATCATCACTAACCCTTCTGTAATCTATCTCGCCCTTTCCAAGGACTTTTGGCACACAGATGTGTTTTTAAGCGTTCATATCAGACATAGCTGAGCTGGGGAATGAGGGAGGGAACATGTCAGCTACACAACAGTGAACAAGGAAGTGAAGAGAGTTTCTATGTTACTTACTATGTCAGTTTCAGGGATGAACAAATTATAAATTGTGTAAAGCTCCAATGTGGTTGTCCAGTCCCATGTATATTTTCTTTGAAACCTAATTAACGAGGATAAAAAGTGATAGCTAATGTAACGTGATAAAATATAGATAGCTAGTTATGTAATTCAGTGcatgaacacagacacaaacgAGTACATAAATTCCTAGATATGGGGGCAACTTGCTTATGGTCAGTattgtttttgaaaaattatttgaaatggCACATCATGCATGTATCCTTGGCACAAAGTCAGCATGTTGTTGGCTGGTGTTTGCTATAAGCTGTAAATTTCTCCTTTTGCACTGTaattaaaagatattatttgagtCTGGCTAACATCTTTATTTGTAACTGCAAGTTGACTGCATGTTGTGCTTGCAGGAGAATTACATGAcagctttgcattgcactttattttgcttattttgttaGTGTTTCCAAATACCTGCGTGCTCCTGATTCTAAAAAGATCGTCTATCATCATGGTAATTAATCCACTTAGTAAAAATGGATGTGTGaggtgcagcaggtggtgggattcggATTCACACTTTAGTTGCAGCATTGAGGTGTGTTGCACTACCATAACCAAATAGAAACTTTTGCTTTGCAAAATTATATAGTGTTAATAGCAATTAATACACATAgtgttatttctttctttggttGTTGaacaagagaataaaaaaaaagaagttgtgATCATTAGCCTACTCAGCTGAGCAATTATGAATAAAAAGCAGATCGTCCAGACAGAGCTGATAGAGCTGTGTAACACTGTAAGCTTGTTAAGAATTAAGTCTGTAACTAACTGTCTGTAGCTTTTTAAGTGGGAGCTGAGGAAAAGCCTTGAATCATTTGCAGACAGGAAAAACTGCATATGAGTAAAAACAGACAGTAAATGCTTTAGTGTTGACTTAACACTTATTGTGTTCATCTGAGTCTTTTGGATTTAATTGAACACTGGAGATTTTAAAGTGTACTATTGTTATTGATGCCACAGATTTTTGCATTTGAAGGAACCTTTTCAGAGCACTTAAAAAAGACCAAAGTGTGGATTTTGTGCACATGAATGAAGTTGTAGGCACAGTTACAAATGTTGACCCTGTTCCAACTCTCAACATTTTCCTTCATAGCTTTTCATGCAAAATAAGGGTATTGTTAGCCATTTTCAAGTGTTGTACCATGTTGTgttcttgctgtttttttgaCAATTATCTGAAGACTCAGTTCTTTCAAGAGCACTTGAGCATTGgcgctctctctcttgcacttGTTTCTTGTCAATTAATGAAAATTCAGTCTTGACACTTCCATCACTGTCGGCTCCTTTAATAGATCTGTGCTTGGACTGTATTCTAGCTCTCTTATCTAGCTGTCGCTTTGGAtgaaagcatcagccaaataattaaatgtaatattttggcAGAGGTTCAGACATCAAAACTCCAGCCTCTGTATTTAttacctgttaaaaaaaaaaaagaaattcatttcCCCTAAAAACCTGTTTATTGAAGGTTGAACATATTGAACATGCACAGTTAAGAACATAGAACATATTTACAGACTGAACACagaaaaaagtagaaaacaataatttattgaCTGGCTTCCTTTCATCGGAGCATCACTGATTTGCAAATCAGCtaatttttaacacatttaaaaaagacaaaacatttcTGGCTAATAAGATCTGTGTATTTTGGCTATAAAAATGGCCGTTTGTAACTGAGGCCCTTTGGAAAGTAAAAATGAGAAGTGTACATTACAGGAGACTAGATAGTAAGGGCTAGAAAGTGTTCTGTTCTTCACAGTAGCATGTTAAAGAGCACCAAATGTTTCACATTAGAAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235279 lncRNA upstream 1569 18418083 ~ 18419984 (+) True G198722
TU234820 lncRNA upstream 72140 18348964 ~ 18349413 (+) True G198311
TU234782 lncRNA upstream 244037 18161674 ~ 18177516 (+) True G198282
XR_004579322.1 lncRNA upstream 254177 18162718 ~ 18167376 (+) True LOC117598699
TU234779 lncRNA upstream 282510 18138151 ~ 18139043 (+) True G198279
TU235326 lncRNA downstream 95980 18525668 ~ 18531296 (+) True G198767
TU235395 lncRNA downstream 250485 18680173 ~ 18698503 (+) True G198818
TU235453 lncRNA downstream 273787 18703475 ~ 18703699 (+) True G198876
TU235464 lncRNA downstream 338705 18768393 ~ 18768690 (+) True G198886
TU235481 lncRNA downstream 393945 18823633 ~ 18824561 (+) True G198901
XM_026914762.2 mRNA upstream 73196 18300226 ~ 18348357 (+) False aatkb
XM_026914763.2 mRNA upstream 73196 18303976 ~ 18348357 (+) False aatkb
XM_026914764.2 mRNA upstream 73196 18325995 ~ 18348357 (+) False aatkb
XM_026914765.2 mRNA upstream 73196 18331519 ~ 18348357 (+) True aatkb
XM_034309218.1 mRNA upstream 73196 18335498 ~ 18348357 (+) False aatkb
XM_026915376.2 mRNA downstream 68557 18498245 ~ 18507858 (+) True bnip3
XM_026915613.2 mRNA downstream 184503 18614191 ~ 18702757 (+) True LOC113527622
XM_026915614.2 mRNA downstream 184503 18614191 ~ 18702757 (+) False LOC113527622
XM_034309113.1 mRNA downstream 376389 18806077 ~ 18812262 (+) False si:ch211-221j21.3
XM_034309112.1 mRNA downstream 376402 18806090 ~ 18812262 (+) False si:ch211-221j21.3
TU234778 other upstream 262924 18155151 ~ 18158629 (+) False pde6gb
trnai-uau_6 other upstream 844177 17577283 ~ 17577376 (+) True trnai-uau_6
TU234137 other upstream 1558058 16855770 ~ 16863495 (+) False anapc16
XR_004579176.1 other upstream 4863040 13483301 ~ 13558513 (+) False tcf7l2
TU235296 other downstream 12198 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 376397 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other downstream 376435 18806123 ~ 18811512 (+) False si:ch211-221j21.3
XR_004579324.1 other downstream 1096954 19526642 ~ 19566684 (+) False LOC113527713
TU237322 other downstream 3573136 22002824 ~ 22003274 (+) True G200571

Expression Profile