RNA id: XM_026915377.2


Basic Information

Item Value
RNA id XM_026915377.2
length 3242
RNA type mRNA
GC content 0.45
exon number 15
gene id pms2
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10280686 ~ 10290416 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGCAGCGATCTACATATGATTTCTTACCCAGAGTTTCGTTCGGTAATGAAATGTAGATCAACGAATTCGCGCATTTCCGGCTGAACTCGTTCACATGCGCCGAATTACTGCATCTAGCGGGAAGTTACAGTGATAATGTGGAGAGATAATGTggttttctgtgatgtaaataaTGCTGTTAATTGATATAGTCTCCAGTAAACGGTGTAACTAGCTAATTAAGCGAGGTATGATCTGAATGCTAAAATGGGAAAACTGTGTTCAAACTGTGGCGGTTGTTTAGCTAACTAACATTCAAACACTTCATGTGAAAGTCAACTATTTCAGCGTGTAATGATTAATCCTGCCTGGAAGTCCACTAGGAAGTGTTAGTGATTCAGTAGCTGCCTCAGGGACAATGACAGAAGCttgCTCGGAGCCAGCCAGAGCCATCAGGGCCATTGATAAACACTCGGTGCATCAGATCTGCTCTGGGCAAGTGGTGTTGACTTTGGCCACAGCTGTGAAAGAGCTGGTAGAGAACAGCATTGATGCGGGTGCTACACAAGTTGACATCAGGCTCAAAGAGAACGGGACAGAGCTTGTGGAAGTCTCTGACAACGGAAAGGGTGTGGAGGAGGAGAACTTTGAAGGCCTAACTTTAAAGCACCATACATCGAAACTGCGAGATTTCTCCGACTTAATTCACGTTGAGACATTTGGCTTCCGTGGTGAAGCCCTGAGCTCACTGTGTGCCCTCAGTGATCTCAGCGTGGTGACCTGTCATGAAAGTAGCCATGTGGGCACTCGGCTCGTCTTTGACCACAATGGCCGTCTTGTCCAGCGAGCTCCCCATCCCCGGCAGCAGGGGACCACCGTCAGCCTTCAGCAGCTCTTCTCCACCCTGCCGGTTCGCCACAAAGAGTTTCAGCGCAACATCAAAAAGGAGTTTTCTAAGATGGTCCACGTCCTGCAGTCGTACTGCATCATCTCCACTGGTGTGCGCATCACATGCACTAATCAGCTTGGCCAAGGCAAGCGTAACACAGTAGTGTGCACCAGCGGGAGCCACAGCATGAGGGACAACATCGGAGCGCTGTTTGGGCCAAAACAGctccagagtctaCTTCCTTTTCAGCAAATATCTCCCAGTGAGAATGTTAAAGAGGATTATGGATTAACTGGGGAAGAACTTCCTACAGATCTTTTCACGATCTCTGGTTATGTATCACAAGCCGATCATGGTGTGGGACGAAGTGCAACTGACCGGCAGTTCTTCTTTGTTAACAAAAGACCCTGTGATCCATCCAAGGTTTCCAAGCTTGTAAACGAAGTCTACCACATGTTCAACCGTCATCAGTACCCGTTTGTTGCTCTAAACATTTCTGTTGCTTCAGAATGCGTCGACGTCAATGTTACACCCGATAAGCGTCAGATATTTCTGCAGGAGGAGAAGCTGTTGCTTGCTATCCTGAAGAGCTCTCTCATTGCCATGTATGAGAGTGGAGTCAATAAAATCAGTCTCAATCACACACCACAAATCACAAGCATTTTTTCCAGATGTAGTGATTCTGCTAATAGTTCAGAAGGTCCTCGAAAAGCTTCGCTGACTGGATTGACTTCAGAAGATGATTCAGAGACTTTGACACAGACCCCAAAGACATCTTTTAACTTAGCTGGACTAAAGGCAGCATTTTCAAAACAGCAGGTTTCTGGTATTGGGACAAAGACCTCTAACAGTAAAACTGTGGATAATGGTCCAactaaaaaaaagatgcattcttttttccattgctcAGAAAAGACTAACTATAGCAGATCTTCAGATACTGCTTCAGAAAAAGCAGCTTCACCACTGAAGGCTTTGAAATCTGGCCTAACCAAGGATGAGCACAAGGATGAGCACGTGGAGGCTGATTCAGGTTTGTCAGAGCAAGGCTCCATCACAGAAACCCCGGAGACTCTGTGTGGAAGCAGTTCTGAATTCGACTCTCCAGATTCAGTTTTAGAGGAACCTAGCATTAAACCAGAGCCTCACAGTGAGTCTGTAGATGAGGTGCATGATGTTTTAGAAACTTCAGAGCAAGAAACGGTGTCTGATATTAATTCTGAAAGGATTTCTAGTCCCAAGGCAAAGAAATGTAGGTGGGATGTGAACCTATCAGAACAGCCCGAACTGCCATCCTCCAGCACGAGCGGTGATTCCTGTGGACTGTATGACAAACCGGTCAGAGTGCAGAAGAAAACAGTGCCTTTGCAGTTTTCAATGACAGAGCTGGTTAGAAGGATGGAGAGACTAAAGACCCAGCAAAGAGGGCAGAATGATCAGGAGCCAAAATATAGACGCTTCAGGGCAAAGATTAAACCTGGTGAAAACCAGAGTGCCGAGGATGAGTTGAAGAAAGAAATAAGcaaggaCATGTTTAAGGAGATGGAGATCATCGGTCAGTTCAACTTGGGTTTTATCATTATCAAGTTAAACTCAGATCTTTTTATTATCGACCAGCACGCCACAGACGAAAAGTACAACTTTGAGATGCTCCAAAAGGATACTGTCCTAAAAGGACAGAGACTTATAGTTCCACAGAATCTCCACCTCCCTGCTGTAAGTGAAactatactgattgaaaatctCGAAATCTTCAAGAAAAATGGCTTTGACTTCCTCATTGACGAGAATGCACCAGTAATGGAGAGAGTGAAGCTGATATCTGTACCCACAAGTAAGAACTGGACCTTTGGCCCAAGTGACATTGAGGAGCTCATCTTCATGCTTAGTGACAGTCCTGGGGTCATGTGCAGGCCTTCTCGAGTCAGGCAGATGTTTGCATCGAGAGCATGCCGCAAATCAGTCATGATTGGGACTGCACTGAATACCAGTGAAATGAAGAAGCTTGTGGTCCACATGGGGGAAATTGAGCAGCCTTGGAACTGTCCTCACGGCAGGCCGACCATGAGGCACCTGGTGAACCTTGATGTCCTCTCTCAGGACTGATGCATGATCGATCATTTGATTTCTGTATTCAGGAGCAGCTCTTTTTCCTTCAAGCTGGAGCAGATCTTTATATATGGTTTCCTGTACAGACTGAAACACATACTCTGTTGCCGTTTTAATCTTTGTTAttgctctgtgttttgtgtgtgtgtgtgtgtgtatgcatttcaGTTAACTTTATCATCATTCAACTTATTACGAGTTGTTTTTATATTCTGTGAATTCCTTTTATCTGTGCGTAAATAAAGAGCTGTTAGAAGACATGA

Function

GO: NA

KEGG:

id description
K10858 PMS2; DNA mismatch repair protein PMS2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229556 lncRNA upstream 54367 10224702 ~ 10226319 (+) True G193842
XR_004579148.1 lncRNA upstream 131900 10144353 ~ 10148786 (+) True LOC117598497
TU229298 lncRNA upstream 453822 9825427 ~ 9826864 (+) True G193646
TU229297 lncRNA upstream 456218 9824047 ~ 9824468 (+) True G193645
TU229153 lncRNA upstream 499731 9694909 ~ 9780955 (+) True G193544
TU229539 lncRNA downstream 34540 10324956 ~ 10329985 (+) False G193828
TU229536 lncRNA downstream 35224 10325640 ~ 10336247 (+) True G193828
TU229537 lncRNA downstream 42490 10332906 ~ 10336247 (+) False G193828
TU229541 lncRNA downstream 42490 10332906 ~ 10336247 (+) False G193828
TU229700 lncRNA downstream 59783 10350199 ~ 10350620 (+) True G193972
XM_026914923.2 mRNA upstream 26049 10239770 ~ 10254637 (+) True cyth3a
XM_026914999.2 mRNA upstream 65731 10201989 ~ 10214955 (+) True atad1b
XM_026915000.2 mRNA upstream 65731 10201989 ~ 10214955 (+) False atad1b
XM_026915217.2 mRNA upstream 113771 10135916 ~ 10166915 (+) False rnls
XM_026915721.2 mRNA downstream 41 10290457 ~ 10296523 (+) True rsph10b
XM_026915722.2 mRNA downstream 41 10290457 ~ 10296523 (+) False rsph10b
XM_026915350.2 mRNA downstream 65361 10355777 ~ 10359207 (+) True bhlha15
XM_034309040.1 mRNA downstream 127485 10417901 ~ 10486419 (+) False trrap
XM_034309042.1 mRNA downstream 127485 10417901 ~ 10486419 (+) False trrap
trnal-aag_8 other upstream 216060 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 645619 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 766851 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 768055 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 768446 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 995781 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 2182267 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 3192885 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 3192885 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 6565354 16855770 ~ 16863495 (+) False anapc16

Expression Profile