RNA id: XM_026915383.2


Basic Information

Item Value
RNA id XM_026915383.2
length 986
RNA type mRNA
GC content 0.43
exon number 7
gene id zgc:163073
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6006693 ~ 6011524 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGATGCTAGGGTATATAAACGCTAATCACTTAGACCTTCTATGTTCCTGCTTGCTTCATCTCTGGTAATCAAATAACCATGGCTACAAAAAAGGAGCACATAAAGGCACCATCCAAGACCTCTTCTCCAGTGCCACAGACCGGTTCTACACCAGGACCAGCTACAGATAAAGCTCCTTCTCCGGCACCTAATACAGCTCCATTAAATGCTGCTGCAGCACCAAAGCTGGTACAAAAATCTGATCTTGTTGCCATGAATGACTTCAGCTCTGAGCAAATTGAAGACATCCGAGATACCTTCTCACTGTTCACTAAGTCAGCCAAGGGTGAAATCACACTTGGTCAGTGTGGAGATGTGATGAGGGCTTTGGGTCTGAACCCTACCAATGCAGACATCTTTAAAGTGCTGGGGACATCAAAGCCTGAGGAGCTTGACTCCAAGTTAGTCGACTTTGAGACATTCCTGCCCATGTTCCAGCAAATTTTAAAGACTTCGAAAAAAGGCAAATATGAGGACTTTGTGGAGGCACTACGCGTCCTTGACAAGGAAGGCAATGGCACAATCATGTGTGCTGAACTCCGCCAAATACTTCTCACACTCGGTGAAAGGTTAACTGTGAGTGAAGTGGATCGCATTCTTACAGGACAAGAAGACTTGAATGGCTTCATCAGCTATGAAGCTTTTGTGAAACACATCATGGCAGAATGAATGACCGactcagGTTGTATGGACCATCACATAATCTTATACACAATTTTGTCAGCTAACTCTATTGCTGTCTACACTCCTGAAATTCTGAACTGAAGTAGCTGCCTGAGGAAGACATCAAGTGTAAAGTGTATCATTCATCACGGACGTGTGCTGATTCAAAGGTCCTGCAAATTAATCAGCCCTGCATCAGATGCCTTAAAATTTAATGGTTATAACAGAGTTGTAGAAAATGCTGTCAGtttaaatgagattaaaaataTGGTTTAAACTATTA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226872 lncRNA downstream 68480 5935653 ~ 5938213 (-) False LOC113527731
XR_003402884.2 lncRNA downstream 68514 5935856 ~ 5938179 (-) False LOC113527731
TU226871 lncRNA downstream 68530 5935539 ~ 5938163 (-) True LOC113527731
TU226870 lncRNA downstream 68530 5935653 ~ 5938163 (-) False LOC113527731
TU226873 lncRNA downstream 68530 5935653 ~ 5938163 (-) False LOC113527731
TU227047 lncRNA upstream 207182 6218706 ~ 6219394 (-) True G191762
TU227049 lncRNA upstream 208288 6219812 ~ 6220381 (-) True G191763
TU227058 lncRNA upstream 239898 6251422 ~ 6252182 (-) True G191772
XR_004579134.1 lncRNA upstream 248341 6259865 ~ 6261598 (-) True LOC117598466
TU227074 lncRNA upstream 278887 6290411 ~ 6290912 (-) True G191786
XM_026914823.2 mRNA downstream 6525 5969736 ~ 6000168 (-) False mapta
XM_026914822.2 mRNA downstream 6525 5969736 ~ 6000168 (-) False mapta
XM_026914818.2 mRNA downstream 6525 5969736 ~ 6000168 (-) False mapta
XM_026914812.2 mRNA downstream 6525 5969736 ~ 6000168 (-) False mapta
XM_026914817.2 mRNA downstream 6525 5969736 ~ 6000168 (-) False mapta
XM_034309356.1 mRNA upstream 80186 6091710 ~ 6097905 (-) True LOC117598564
XM_034309116.1 mRNA upstream 89557 6101081 ~ 6102526 (-) True LOC117598474
XM_034309357.1 mRNA upstream 97457 6108981 ~ 6110127 (-) True LOC117598565
XM_034309552.1 mRNA upstream 117583 6129107 ~ 6135120 (-) True LOC117598661
XM_034309551.1 mRNA upstream 122420 6133944 ~ 6135114 (-) False LOC117598661
TU226699 other downstream 230673 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 392739 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 533223 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 704488 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 943298 5059527 ~ 5063395 (-) False LOC113527048
XR_004579320.1 other upstream 536547 6548071 ~ 6594390 (-) False itga3b
trnap-agg_9 other upstream 2446803 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 2463735 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 2836138 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 3065265 9076789 ~ 9076860 (-) True trnaa-ugc_6

Expression Profile