RNA id: XM_026915398.2


Basic Information

Item Value
RNA id XM_026915398.2
length 4949
RNA type mRNA
GC content 0.42
exon number 7
gene id pank1b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10043909 ~ 10053194 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cGTGCCGTGACGTTTCACTCGGCGCGTGACGTCACCGACCGGCTGTTTGACTCGGAAGCTGCAATGCTCGACAGAAACGCgtgaggaaagaaaaatgacCGCCAGCGACCTCGAATTCACGTCctagaaggaaaaaagaaaacattttcctTTCACTTATCAGTGACAGCTGAGTACGACAGCCTTCAGTCACTTCTGACTAGCTAAAGGGCTTCACCGCGGTTCACTGTAGCGTCGTCGAAGGTACACAGTTAAACCGTAGCGTTGAGTCTTCCAGCGGTCGCTGCGTGCTCCCATTACGGTGTGAAGCTATGGAGAATACCAAAACACCCGAACATAATGGAGCAGCTACACACTACACCAACGGGCTGCTGAACGGCTTTCACCCGGCGCAGTCTAGTCCGAGCGGAGGTGGCGTTAGTGTCGGTGGTttaggaggtggaggaggtggaggaggagatgaCAGTGGCCCGAACTGTAGCGGTGGCCATAATGGTATTGAAAATTTCCACCATCTTCTTCACCATCAGGATGTCGCGCACAGCCACGGCTCTCCTGCTAAACGCTGCAGGCTCCGCAGACGGATGGACTCGGGGAGAAAACACCGACCCCCCTTCCCATGGTTTGGCATGGATATCGGAGGCACTCTGGTGAAGCTGGTCTACTTCGAACCGAAGGACATCACAGCAGAAGAGGAACAGGAGGAAGTGGAGAGCCTGAAGAGCATCCGCCGCTACCTAACATCCAACGTGGCCTATGGCAACACGGGCATCCGTGATGTGCACCTGGAGCTGAAGAACCTGATCATGTGTGGCCGCAAGGGCAACCTGCACTTCATCCGTTTTCCCACACACGACATGCACAGCTTCATCCAGATGGGCCGTGACAAGAACTTCTCCAGCCTGCACACCACGCTGTGTGCTACTGGAGGGGGAGCCTACAAGTTTGAGGAGGATTTCAGGACgGTGGCGAATCTGGAGCTGCAGAAGCTGGACGAGCTGGACTGTCTGATCCAGGGCCTGCTCTACGTCGACTCTGTCGGTTTCAACGGCCACCCAGAGTGCTACTTTTTCCAAAACCCCTCTGATCCTGAAAACTGTGTCAAGAGGCCATGTTGCCTTGACAATCCCTTTCCCATGTTGCTGGTAAACATCGGCTCAGGGGTCAGCATCCTGGCAGTTTACTCCAAAGACAATTACAAACGGGTCACAGGCACCAGTTTGGGAGGGGGTACGTTTCTCGGTTTGTGCTGCCTGCTGACCGGCTGTGAGACGTTTGAGGAGGCTTTAGAAATGGCGGCGAAAGGGGATAGTACAAACGTCGACAAGCTGGTAAAGGACATTTACGGTGGTGATTATGAGCGCTTTGGTCTTCAGGGGTCTGCTGTTGCATCCAGTTTTGGTCATATGATGAGCAAGGAGAGACGTGATAGCATCAGCAAAGAAGACTTAGCCAGAGCTACTCTTGTCACCATAACAAACAACATCGGTTCCATTGCCCGCATGTGTGCTGTGAATGAGaaaatcGAAAGAGTTGTATTTGTTGGGAATTTCCTGCGAATCAACACAGTTTCTACAAAGCTGCTAGCTTACGCCATGGACTTTTGGTCAAAGGGACAGTTGAAAGCCCTGTTTTTGGAACATGAAGGTTATTTCGGGGCTGTTGGTGCCTTCCTAGAGCTACTGAAGATGACGGATGACCTCTGAGGCATTGAAGAACTCCTGAACTTTCTAACCAGAAGCTGCTGTAAGATGTCAAAGAAAGCCTCCTCCTATAACCAGGAAAAGCCAAGTCAGCTATCTAAGATGATGCCTGTATACTTCTTCCCTGTTTGAAAGCTTAATGCAAGCCTAATCTAGGTACCTGTATCGGGTTTGGAgagtattttgtgtatttgccaCTAATAAGAACGGTACAGTCTGCTGTAAGACAACATGAAGATGGTTATGTCAATAGACAATGCCCCATAAGCCAAAATCTGCTGATTTTTAGACTGATGCTGAGCACTTCTGCAAAATCCTTGTTGTGttgtatgttttaaatatttggcaTAGAACATGACTTAATAGAAGTAATAGATACAAAGTGATGTACTTTGTCTCTTCCACCTTATCTTAAGTCATGGTTCCATTGTATTATAGTCTTCTTTACCttgttcaaaatgtttcagTGAGATTTTGGCTAACTTTTGTGGTTTTAAAGGTCCAATAAGTAAGATTTTACCATTAACACTTAATGGTAGAATATATAACAGAATATTAAGGAAAGTGGCTATCACTTCATTGTCATAGGGATAGGCTGATCGCTGTAGTAACAAGAAGTGATTTATGATCTGGGCAATTGACTCCCTTTTCCCTTCATACCGGCCACACTGGAGTTATGTCCAGTTCacatgttgcaaaaaaaaaacaaaagaacatgtGACCAACTATGATTAGCAGTTAGTCAGTAATATGCAATGTACAGCAAAGCTGATAATTCTCTGATTACGATGTGAGCATTACTATGCACACCTCAGTAAACTAAACACTGTGGTCCAGCATTAGTGTACACAAGAGACCTAGGCCTGATCTCCAGGGCAGGAGATTTGAGCATATTACTTACTGGactttcatatttatgtttaaaaaattgtacagtgtaaatCAGTTCAGAAAATCCATAGGACAGATTAGCAGTATTAGCCCAATCAAATATATAGGCCTATGTCATTTTTGAGATTTCTCCACCTGAAGATTTAGAAGCTATAAATTTTGGGACCAAGATTTTTGGTGTTTACTAATCATCAGCTTTTGATTTGTTAGATGAGTAGTTGAACGCTGATTTATTCAACAGTAACAGTACGCTCTAGTTTtatccaaaagtctgagtgaTGAATTGTTTGCCGAATGACTACTCCTCTCACATGACCATAATTCTTTTTAACCTTGAGATGTACTTACACTGTAAtagatgttctttttttttatttgtttctatttaaaCCATATTTTTGCAGATTGTATCATTTTAGCAATAGTCATATTCGTGGCATTATATGATGATATCATAATTTCACTTGAAACTCTAAATTGAGCCTCTAAACATGTCTCCTGCCTTTTTCCCCCGCCTTTCCAACAAATGCCTTCATCGACCTCTCTGTACTTTTCTCATCGACACTCTGTATGTTTCTTTTAAAGAAGCCCAGCATAATGTACCTTTAACATGAGCATGCACCTTTAAATAGCCTTCTCCAAAGCTCCATCCAGCAGTAAGAGTAGTGCTCTGTTTGGCTGAATGCCGACTGAATCCTGCAGACTGTGAAACATGTTTCTACGAGAAAGTACCGGTGTGAAGAAGGGTTCCTTTATCGCAGAGCGATTGGAGCTGAGGCTGTTAGGTTGAAAGAGGGCTGGGAGTCTGTTGGGTTGAAAGTAGATACTGAAAATCTAGATAGTCTGGAAGATCCAGTCACTGTAACAAATTCATAAACACAGTGCTCCTATTGGGATGGTTTGTCTTTACTTTCCTCCATTTTGTCTATGTGTAGCTGCATTTGCAAAGAATGTGACGAAAGTTAAGTATATGCAGAATATCAGCATTGCAATTCTGCTGACCAACTTTGTAGTATTTAAGGCAAATATACAGCGTGTTAAACTAATCATGGTAAATGAAGTCAAACACTAGTAATGCTTTCATGTCACCTCAAATGTCTAGTATTCAATCACCAGCTGTCAACAGCCACATACACATATGTTATGTCTATTTAAAATGCCTCATACTCTGAAACACATTTGTAGTTGAAGGCACATGGACTTTTAAGCTTCTGCAAACATTACAATGCCAATGGGAATCACGCATTCCCTTTTATTGTGTAGAGATTTGAACCTGTATGTGATGCTGGAGTTCATTCTGTttcctttacacatttttccaCTTCATCCTCCCATTACCTCTTCTTAGTCCTCAGAATTGCCTTATGCTGTTGGTCACCATTTTGACTTCTGAGTATCTGTGTATGCACGATGGGAGTCCAAcacaacactttttttgtttcaatcaaGTGTTACGGGGTGCCTTTTACTAATGGAGACCAGACTTTTATCTGTGCATTTTCCTTCTTCATCTAGATgtcattgtaaaatgttaatgttgagTTGgtctgttcatgtttttttttttaattcaggaaATTGAATCCATATGTTAGTACACACTGTTCTAAGCTCTGAGTCACTGCAAACTAAAACTACACCAGGAAGAGTATGAATACAAAGCAGTGTGAGACAAGTTAAGGCACTACGGTCTTTCCCATTAATGTTGAATGTGTGCTTTGTACCAGGCTTTGTGTGTCTGCTTAATGCATGAATGGTAGGGCTTAGCTTATCCTCAAGCatgttcattttctgtttttgtttgctcGTTTGTTTCTTAATCCGAAGGGTATTTCTTGattgttttttggttttccttgttttgtttttgtttttttacattcacaCCAGCCTGTTTAGTCATAGTAAATGCATTATCATCTCAAACCTTTAAAGAGTTGacatgatttaataataaaatccttCCAGAATCTGGTCTTATCTTTAATAACAGACCACTGTTTGCTTCCTTTCAGCAGTAATGAGTACAGTATGCCTGATGTTGTACCAGAATGTGCTTGGTCTCAGCTGTATGGCACATACCTTATCAGTTAAAAGGCAGTATATTACCATGTGTGTAATCTCCCCTTCAGTGTTGTCACTCTGATCTGGCAGTGTGTGGACTGTGTTTACAAGTTCTAGAGGGGGCCAGGACTTTATTTATGCCCCATGTGGAATGAACAGCTAATTCCAACCTGCTCTAAAAATTCGTGTTCTCACAAAgctcttttgatttttttttttttccatttattcttCAGATTTTCTCTGTTGTCAACAAACCTTGTGAATACTtattaaatgtgataaatgGGT

Function

GO:

id name namespace
GO:0015937 coenzyme A biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004594 pantothenate kinase activity molecular_function

KEGG:

id description
K09680 PANK1_2_3, CAB1, coaW; type II pantothenate kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229298 lncRNA upstream 217045 9825427 ~ 9826864 (+) True G193646
TU229297 lncRNA upstream 219441 9824047 ~ 9824468 (+) True G193645
TU229153 lncRNA upstream 262954 9694909 ~ 9780955 (+) True G193544
TU229145 lncRNA upstream 378393 9663930 ~ 9665516 (+) False arhgap23b
TU229133 lncRNA upstream 390649 9652172 ~ 9653260 (+) True G193542
XR_004579148.1 lncRNA downstream 91159 10144353 ~ 10148786 (+) True LOC117598497
TU229556 lncRNA downstream 171508 10224702 ~ 10226319 (+) True G193842
TU229539 lncRNA downstream 271762 10324956 ~ 10329985 (+) False G193828
TU229536 lncRNA downstream 272446 10325640 ~ 10336247 (+) True G193828
TU229537 lncRNA downstream 279712 10332906 ~ 10336247 (+) False G193828
XM_034309358.1 mRNA upstream 15788 10025230 ~ 10028121 (+) True LOC117598566
XM_034309444.1 mRNA upstream 18333 10014547 ~ 10025576 (+) False kif20bb
XM_034309441.1 mRNA upstream 18333 10014548 ~ 10025576 (+) True kif20bb
XM_034309443.1 mRNA upstream 18333 10014548 ~ 10025576 (+) False kif20bb
XM_034309442.1 mRNA upstream 18355 10014548 ~ 10025554 (+) False kif20bb
XM_034309422.1 mRNA downstream 279 10053473 ~ 10062239 (+) False slc16a12b
XM_034309423.1 mRNA downstream 279 10053473 ~ 10062239 (+) False slc16a12b
XM_026915284.2 mRNA downstream 280 10053474 ~ 10062239 (+) False slc16a12b
XM_026915283.2 mRNA downstream 821 10054015 ~ 10062239 (+) True slc16a12b
XM_026914636.2 mRNA downstream 23823 10077017 ~ 10078115 (+) True ch25h
XR_003402888.1 other upstream 408842 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 530074 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 531278 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 531669 9512169 ~ 9512240 (+) False trnaq-cug_13
trnar-ccu_4 other upstream 534113 9509724 ~ 9509796 (+) True trnar-ccu_4
trnal-aag_8 other downstream 11351 10064545 ~ 10064626 (+) True trnal-aag_8
trnaq-cug_16 other downstream 1233003 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 2419489 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 3430107 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 3430107 13483301 ~ 13558429 (+) False tcf7l2

Expression Profile