RNA id: XM_026915419.2


Basic Information

Item Value
RNA id XM_026915419.2
length 2387
RNA type mRNA
GC content 0.41
exon number 3
gene id kcnj16
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 21753341 ~ 21777831 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacagcaacttTCACCATCTGAGACATGTGAGTCAGTTTCTTAGTAAAGGTACAGGTCCTCACACCTCACAATTCGCAAGGAAGAGGGACAGCTCAGgccaacagcatgaattcaCGAACAGTGTATTACTCCAACGTATGGACTGATGATGGCTACATCTCCACGAAGAGACGTTATGTGCATAAAGATGGCAGCTGTAACATAGCGTTCCGCCACGTGCCTGAGGAGTGGCTTTTATATGTGACAGACATCTTTACCACACTGGTGGAGATCCGCTGGAGAGTCATGTTCTTGACCTTTGCCCTCTCATATATCTTGTCCTGGCTCTTTTTCGGGATCCTGTTCTGGATTATCGCACTGATGCATGGTGACACAAAGGACTCAAACAATGAGCCATGCGTCTATGAGGTGAGAAGCTTTACAGCagcctttctcttctctcttgaGACACAGACTACCATCGGATATGGCTCACGCGGCATGTCTGAGAACTGCATGCTAGCCATCATTACTGTGACCATCCAGGACGTCATCAGCGTCTTCATCGACACCTTTGTAATTGGGATCGTTGTGGCCAAAATGGCATCAGCCCGGAAAAGAGCGCAGACGGTGGGATTCAGCAATACTGCCGTGATTAACCGTCGTAATGGGCATCTGTGCCTGTCATGGCGAGTGGGTGACTTTCGTAGAAACCACATGGTGGAAGGAACCACGCATGCCCAGCTGGTCAGATACATAGTGCACACAACTGGCAGAGCTGACATAACCTACCATGACCTTGAAATCCAAAACAGTCATGTCATTCTGGCCACCCCAGTGACTATCATCCACCAAATCAATGCCAGTAGTCCTCTGTATAAAATGAGACTGCAAGAGCTACGCAAAGACAGCTTTGACCTGGTGGTGACTTTCACCTACACAGATGATTGCAGTGGGATTCTCCACCAGTCACGCACGTCCTACACTCCCAGTGAAATCCTGTGGGGTCAGCAGTTTCAAGAGATGGTGAGAGTTACCCAGAAGTCCTACAGAGTGGACTATGCGGTCTTTCACCAAACAGTTAAAGTCCCACTGACGGAAAGCAGAGCTGAAGATTATGAACTAAACAAGCATCCTCCAAGCCGTAAACAAGACCCACAAATGGGCTGTTCTCTAGCAGTGGAGACTGAAGACATCTTAGGTCAAAACCATACCAGCACTGCTATTCGACAAGAAAAACTATAACAAACCATGGTATCTATAGGACTTTATAGTACTTAGGGTACATTAAAGGGCCAATAAATGTGTAAAGCTATGTATAAATACACACGAAGcgacatgaataaatgaaatatatcatAAACACTTCAAGACAGCTATGTTAATGTTCAGCCATATATACATGTGGACTGTTAGATTCCAGCGTGAGTCATTCAGGATGTTCTAATTAAGCCTTTCCTCAAAATAGCATTTTATAAATAGAACTTGTAGACCACCTTGCTCAGGTATCTGATTCCACAAAATCACGAAATATGTGCaataatttaatgatttatattatttattatgcagGCAATCCAAAGTGCTGTAGGACCATGCTTTATCTATTAAACAACATGATCAAACTTGATTGTCCATGTGCTTTAGAAAACTCACCCTGAAAAGTGGTTTGCTATATATTATGacagaaatataaacatgtaaagaaTCAGCTTCTATAATCCTCTATGTGGCTAACTGGATTTGCTGTGCATTAGTGCTAAATGTTGGTCATTTCAGTGCCATTTGCTGAATTGTATTATCCATATGGTAAATAATGCAGTAAGGCTAACATTAAAGTGTTATACATTGTGTCATGTTACCATAGCAGGAAAATTTAAATCAAGTCTAACAGAATCATGTTTCAGCTTTTGCCTTCTTCCAAAATCTTCCTAATGACAATATAGTATCCATTTGGTAATAACATTTACAACTAAAAGGCTAAGGCAGAAATTTTGGATCATATGTTTTCAGGTTCACAGGAAACTATAATTCATGCTgtctacaccacacacacgttTTGAAACTGTTCAATCAGTATCATTACTGTATTTGTATGAAATTTTGGTCATTTGTATAAGGCCTACAATCAATAGCTCCAAAATGATGTGTGCCTTCCCAATTTCACAGTGCAATATGAGATTATTTTTAGATTCACTAATGTGACTAGTGACATTTGTGAGTAGTGACATGTCAGCTGACCCAGTATAGGTTGTAGATTATTCATAATGTCTTTCCTTAAACCTATTTTACACCAGACTCTGTAACCGTGCAAGCGTCAGTACCACGGTGGACGCAGGCACATTTCTTATGCTCGTAGTCAATCAGAGCATGCTGGCAGAATAAAGTATCATGCTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237170 lncRNA upstream 98730 21653231 ~ 21654736 (+) True G200430
TU237157 lncRNA upstream 109812 21639694 ~ 21643654 (+) True G200420
TU237153 lncRNA upstream 143009 21610254 ~ 21610457 (+) True G200418
TU237068 lncRNA upstream 295702 21457419 ~ 21457764 (+) False si:ch211-216b21.2
TU237058 lncRNA upstream 367433 21384076 ~ 21386033 (+) True G200325
TU237306 lncRNA downstream 196398 21974229 ~ 21978282 (+) True G200555
TU237307 lncRNA downstream 201252 21979083 ~ 21979381 (+) True G200556
TU237310 lncRNA downstream 208531 21986362 ~ 21987001 (+) True G200559
TU237311 lncRNA downstream 209689 21987520 ~ 21987869 (+) True G200560
TU237312 lncRNA downstream 210355 21988186 ~ 21988754 (+) True G200561
XM_026915925.2 mRNA upstream 113882 21612958 ~ 21639584 (+) True unc13d
XM_026914739.2 mRNA upstream 252537 21457391 ~ 21500929 (+) True si:ch211-216b21.2
XM_026915385.2 mRNA upstream 600540 21139857 ~ 21152926 (+) True pmp22b
XM_026915607.2 mRNA upstream 632513 21112476 ~ 21120953 (+) True tekt3
XM_026914644.2 mRNA upstream 684002 21062462 ~ 21069464 (+) False LOC113527122
XM_026915823.2 mRNA downstream 5198 21783029 ~ 21790227 (+) True kcnj2a
XM_026914870.2 mRNA downstream 158584 21936415 ~ 21959218 (+) True itgb3b
XM_026914659.2 mRNA downstream 183287 21961118 ~ 21966277 (+) False nat9
XM_026914660.2 mRNA downstream 183340 21961171 ~ 21966277 (+) False nat9
XM_026914657.2 mRNA downstream 183343 21961174 ~ 21966747 (+) True nat9
XR_004579324.1 other upstream 2186782 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 2941204 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 2941954 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 3243307 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 3594837 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 224993 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 230680 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 1020350 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 1427835 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 1546242 23324073 ~ 23329571 (+) True G201214

Expression Profile