RNA id: XM_026915425.2


Basic Information

Item Value
RNA id XM_026915425.2
length 3831
RNA type mRNA
GC content 0.48
exon number 20
gene id rnf40
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12434535 ~ 12446996 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTGATATAATACGTGGTTCATACAGTTTGACGTGCACTGTTGAGGAACGgtgtatttgttatttaaaacatgaacaCAGAGCTAACCTGAGTAGCTTCAGAGTGAgataagatgtttatttttgtgaaattgTCCGTGTATACAGACGGACTCCCtcgctagctagctggctaactcaTCTAGCTAGCATACAGCCGCGATATTGTCatcatattagctagctaacatcatATTAGCTGGCTAACAGCGCTCACAGTCGCCTGCTGACTAGCTAGCGaTCAGGGAACCATGTCTGGCACTGGAGGCAAGCGAGCCTCTGGAGGGGACAGTCCTCCAGGGCCacctgaaaagaaaatgaagaaagaagagaaaaccaCGACCACTCTTATCGAACCTATTCGCATCGGAGGTGTTTCTTCTACGGAGGAAATGGACATGAAGGTCATTCAGTTTAAGAACAAGAAGCTCTTTGAGCGTCTCGAGCAGAGGCAGGCTATCGAAGatgaactgagagagaaaattgAGAAGCTGGAAAAAAGACAGGCAACTGATGATGCCACGCTTCTTATCGTCAACCGCTATTGGACTCAGCTGGAAGAAAATGTTCAAGAGTTACTGCAGCGAGTTGAACCTAAGGCTGGTCCAGTGCCTGCACAGGCCCCTGTTAGTCCTCCAGCATCTGCCTCTGCCCCTGATCCTGCAACTGCCCCCTTGCCTGCCCCTGATATTCCAGCTCCTCTGCCAACTCCACTGGAGGGAGAAGATGGCCTTCCACAGCCTCCACCTCCAGCAGATGAGgaggaacagcagcagcagcagtctgaaCAACTCCAGCTGCAGGAGCAGGAtaaggagcagcagcaggagcagtcTGATGCAGCGGAAAAGCCGCCTGAGGAGCCAGTAGTGGATGGAATTGCTGTCCCTCCTCCACCTCCCCCGTTGAGTGAAAGTGCAAAGGCTTTCCTCTCAACTCTGGATAACAGCAGTGAAGAGGAGCTCAGCTTGCAGCTACAGGACAGGATGCAGTTCAGCAAAGGTGCAGTGGCCTGCATAGTCTGCATCTTTGACCGCCTGCACAGCAGCATTGAAGATCTGTGTATCCGTACTCAGGCAGCAGtaTGTGAAAATGACAGTCAACGTGAGGTCCTTGCCACAAATCGCAGTCTACTAGAGGAGAATAATAAACTACAAGATCTTGCTTCCTCACTGCAAGGAAGACACCACAAAATGTCACTGGAGTATAATGAATTAGTTGATAAAGTGACCAGCTCTGAGACAAAAGTGTCTGAGATGGAGACAGCTGTTGAGGACCTGCAGTGGGACATTGAGAAACTTCGCAAGAGAGAGCAGAAGCTCAATAAGCACCTAGCAGAGGCCCTTGAACAGCTGAATTCAGGCTATCATGCTTCTGGCAGGTCTGGTGGCCTACCTGGTGGGCAGATTACTCTGAACATACAGAAGTTTGAGTCACTAAATGCAGAGCTGGAGCAGAACCAGGAGCTGGCCAATAGCCGCATGGCAGAGCTAGAGAAACTGCAGCAGGAGTTACAGGAGGCAGTGAGGGAAAGTGAGAAACTCAAGATGGACCTTCGGAACATTCCAGAGGAAGTGGTGAAGGAAACACCGGAGTACAAGTGCCTTCAGTCTCAGTTCTCTCTGTTGTATAATGAGTCTCTAGGAGTGAAGACGCAGCTGGACGAGGCCCGGGCTCTGCTGCTTACTGCCAAAAATGCTCACCTGCGCCAGATAGAGCACATGGAGAGTGATGAGTTGTCTCTTCAGAAGAAGTTGCGAACTGAGGTCATCCAGTTAGAGGATACATTAGCTCAAGTGCGCAAGGAATATGAGATGCTACGGATTGAGTTTGAACAGAACCTTGCAGCCAATGAGCAAGCAGGCCCAATAAACAGAGAAATGAGACACCTAATCAGCAGCCTTCAGAACCACAACCACCAGCTCAAGGGGGATGTGCAGAGATACAAGAGGAAGTTACGTGAGACCCAGGCGGAGATCAACAAGATGAAGTGCCAGAGTGGAGACAATGGCAGTATGCTAACTTTGGAGGAGAGTGTGAATGACGGAGGACTGGATGTGAAAAAGGAGGAAGAAGATGACCAAgacgaggaggaggaaaggaggagAGAGCTGGAGAGGCAACGAGCCCGAGAAcgtgagagagaggcagagagggagagagagagagagcgagaacgGGAAAGGCAGCGCAGTGAGGAGCTGAAGAGAAAAGACTCAGACACACTGAAGATGCTCCGAACAGAGCTCAAgaAAGCACAGGAGTCTCAGAAGGAGATGAAGCTGCTGCTAGATATGTATAAGTCTGCTCCAAAAGAGCAGAGAGACAAAGTGCAGCTCATGGCAGCTGAGCGGAAATCAAAAGCAGAGGTGGATGAGTTGAGGCAGCGGGTACGAGAgttggaggagagagagaggaaggagagtAAAAAGCTGGCTGATGAAGATGCTCTGAGGAAGCTTCGGGTGGCAGAGGAGACCATTGAACATCTGCAAAAGAAGCTCACTGCCACTAAACAGGAAGAGGAAGCCTTGCTAAGTGAGATGGACGTGACGGGTCAAGCTTTTGAGGACATGCAGGAACAGAACAGTCGTTTAATGCAGCAGCTGCGTGAGAAAGATGATGCCAACTTCAAACTGATGAGTGAGAGGATCAAATCCAACCAGATCTACAAACTgctgagagaggagaaagaagaacTGGCTGACCAGGTGCTCACCTTCAAAACCCAGGTGGATGCTCAGTTGCTGGTTGTGCAAAAGCTGGAGGAAAAGGAGGGCATCCTGCAAAGCTCACTGGCTACTCTGGAGAAAGAATTAGCGCTACGCACACAAGCTCTAGAACTCAATAAGCGTAAAGCAGTGGAAGCAGCTCAGCTGGCTGAGGACTTAAAGGTGCAGCTGGAGCACACTCAGGCCAAGCTGAGGGAGATCCAGGCCTCAGTGCTGGAAAACCGCAGTGCacgtgaaagagagagtggcaACCTCAAACGGGCACAGGAGGACTTGTCAAGACTCCGCCGAAAGCTGGAGAAACAGAAGAAGGTGGAGATGTATACTGACGCAGATGAGATCCTGCAAGAAGAAATTAATCAGTATAAGGCTAAGCTGCGTTGCCCCTGTTGTAATACCCGGGATAAGGAGACCGTGCTTACAAAGTGTTTCCATGTTTTCTGTTACGAGTGCTTGAAGACCCGCTATGATACTCGGCAGAGAAAATGTCCCAAGTGCAATGCTGCTTTTGGAGCCAATGACTTCCATCGCATTTACATCACTTAAGTCCAAGATGGGATAATTAACTCAATGAACAGTAAAGCGATGGGAAAGTGGATTTAAGAGCAAAGAGTACGGATGTGGCATAATATTCTGCTCAAAATGCTACTTCTATTAGATCTGTGAGTAGTCGAGGCTAGTGACCAAATAGACAGCAAGTCTGGACTTGAACGGGGTGATGCTGTGACTATTAAAGCCAGTAGCACACAACAAGTGCTTGTTTATAGCTACCGTACTTAAGCATATAGGTTGTATTTCCACTTGGTTAATAGTcctttaagtgttttttttttttaaacatggatTTGCTTTATGAATGTGTCTTGGAACACACAGTACATTTACATCATTACGGTCTCAATTACAATTTTAGTACAATTTTATTGTaccagttgtgtgtgtgatattttgcACAGTTGCAGATGTTGTAACagacagtttttcttttttcctcattgtAGTCATGTGTTGAATCCAAATGCAGAGTACAGTAAATCCAAGATTCAGTTTTTTGATGTAA

Function

GO: NA

KEGG:

id description
K10696 BRE1; E3 ubiquitin-protein ligase BRE1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231049 lncRNA upstream 60351 12374010 ~ 12374280 (+) True G195084
TU231048 lncRNA upstream 63346 12371056 ~ 12371285 (+) True G195083
TU231012 lncRNA upstream 184876 12249060 ~ 12249755 (+) True G195047
TU230980 lncRNA upstream 258512 12174394 ~ 12176119 (+) True G195016
TU230966 lncRNA upstream 289424 12145001 ~ 12145207 (+) True G195002
XR_004579205.1 lncRNA downstream 4897 12451893 ~ 12453678 (+) True LOC117598562
TU231214 lncRNA downstream 103138 12550134 ~ 12550360 (+) True G195225
TU231292 lncRNA downstream 196272 12643268 ~ 12643526 (+) True G195287
TU231306 lncRNA downstream 211109 12658105 ~ 12658323 (+) True G195301
TU231526 lncRNA downstream 397329 12844325 ~ 12844561 (+) True G195512
XM_034309620.1 mRNA upstream 4096 12422750 ~ 12430535 (+) True phkg2
XM_034309621.1 mRNA upstream 4096 12422750 ~ 12430535 (+) False phkg2
XM_026914825.2 mRNA upstream 18841 12407353 ~ 12415790 (+) False nfe2l1b
XM_026915683.2 mRNA downstream 15866 12462862 ~ 12466434 (+) False znf668
XM_034309353.1 mRNA downstream 16115 12463111 ~ 12466434 (+) True znf668
XM_034309502.1 mRNA downstream 19589 12466585 ~ 12468184 (+) True LOC117598642
XM_026915699.2 mRNA downstream 25683 12472679 ~ 12473983 (+) True LOC113527673
XM_034309496.1 mRNA downstream 25695 12472691 ~ 12473983 (+) False LOC113527673
trnaq-cug_16 other upstream 1148363 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 2370005 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 2799564 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2920796 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2922000 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 25687 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1036305 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1036305 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 4408774 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5130287 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile