RNA id: XM_026915434.2


Basic Information

Item Value
RNA id XM_026915434.2
length 2137
RNA type mRNA
GC content 0.42
exon number 12
gene id skap1
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11570656 ~ 11597077 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTCTAACACTCAGAGGATGTGTGTGGATGTCTGTGTTGCCACACTGTGTAGCGTCTTTTGGTACATTGAAGAGACAACATACTCACTCAGAACAGCTTTTCTATAAAGAAAATTTAGAAGACAGGATCATTCAAAGTTTTTCAGTGGAGTCTTACATTCAGAGAATTGATGGGGACAGTTTACGATGACATCAGAAGGCTTCTCCAAGATTGTGAGCTGTTTGTCTCAAGTATTTTGGAGGATGAGAAGCTCAGTACAGATGCTGAAGAAGCAAGACAAATACTACTAAACAACTTTCTAGTTGTCCACAACAGaaatccACAGGAATTTCCATACAGATCTGATGTTAGAAATGAGGACCGTCCAGATGACAACCACAATAGCCAGGGACGCTCTGCCCCTTCTGACGATCTGTCTATGGCATCAGACTTTCAGGAGGACACTGGGCCTGAATATATTGGAGATATTCCAACAGTGGCAGCACAAGATTTGAGTAATATTCTGAAACAGGGCtatctggagaaaaaaagacgTGATCATAGCTTCTTCAGCATGGAGTGGCAGAAAAAGTGGTGTGTCCTAAACAATACCATATTCTACTACTTTGGAAGTGAAAAAGACAAACAGCAGAAAGGATCTTTTTATATCAATGGCTATAGTGCAGAGATGGTGCCCAACTTGCGTAAAGACTCCAAGAGAAACTGTTGCTTTGAGATGAATGCTCCTGGAAAACGTTCTTACCAGTTCACTGCCAGCAGTCCCAGTGAGGCCAGAGAATGGGTGGACCAAATCAATTTTGTCTTAAAGGACCTGAGCTCCAGCTTCATCCcctttgatgatgatgaggaagaggaagaggaggatgaagaggaagcATATGATGATATAGAAAGAGCAGCAACTCCACCACCACATCCTGGGCAGGTCTCTACAGCTGCCCCCACTTCAGCACCACCACCCGGTGGCCAGGAGGTGAAGAAGGACAGAATAGGGGCAGccagagaggaagaggatgaggaggaagaggacatCTATGAAGTGCTGccagAGGATGAGCTCTCTGACCAGTCTGATGAGAGCACCATGAAGAGCCAAAGAGGAGATTCATCATCAAATTATGCCAATTACTATCAAGGCCTGTGGGACTGTGAGGCAGACAAGCCAGATGAGCTCTCGTTTTATAGAGGAGACCTCATCTACATTCTGAGCAAGGAGTACAACATCTATGGCTGGTGGGTTGGTGAGCTGAATGGTGATATTGGCATTGTACCCAAAGACTTCTTGCACCCTGCGTACATTATTTAAGCTGTTAAAGTAGGTACAGCCCCAGTTCTTAGGCATGAACCCTGAACAATCTTCAAGCCTCACCAAAATCACCACAGATGCATCACCGACATACTACAACTCACTGAACAGAAGATGATATTTTACACACAAGATTGTTGTTTTATAAGCAATAAACAACACATCGTGTAGATAATCGGAAACTTTTAAATTAGTGTGCAGTGAATATCATGGCCAACATTCTCCCAACACTGACATCTTTTAAcaacagaaaattaaataacagcagGGATTaatgctgaatgtttgtgtCTGCTTTAAAAAACTGTTGTGGTCAGAGAGAACTATGTAAAAGTGCCTCAATTAATTTAACTTATAAACTCCTGTTGTAGGATGTATTAACCTGAGAATTtatcattatatacagtatataatttctCATCCAGTATACCTGCTCAGTGAAAAAAaggatgtggtcttctgttgctTATAGCTCATCCGCTCCAACATTTGACATGTTcttcattctgagatgcttttctgctcatcatggttgtaaaaagtggttatttgagttactgtatccttcctgcTGCTCGCTGGATGTTTTTCATACCATTGTGCGTGAAAACCCCAAACGattaacagtttctgaaatgctcatatcagcccatctggcactatTAACCATGCCAAGGTCAAAgtcattgagatcacatttttttccatcagaatgaatgcatgaagctcttgacctgtatctgcatgatgttttgGTTTGTACTACCACCACATgaaaattacatgaatgaggtgtgcatgtgttcctaataaagtggtcagtgagtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230438 lncRNA upstream 191466 11378461 ~ 11379190 (+) True G194571
TU230242 lncRNA upstream 322549 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230183 lncRNA upstream 363680 11135232 ~ 11206976 (+) True G194360
TU230204 lncRNA upstream 450106 11120318 ~ 11120550 (+) True G194380
TU230113 lncRNA upstream 474478 11093163 ~ 11096178 (+) True G194293
TU230523 lncRNA downstream 453 11597530 ~ 11602441 (+) True G194623
TU230532 lncRNA downstream 17312 11614389 ~ 11621269 (+) True tmem106a
TU230688 lncRNA downstream 121820 11718897 ~ 11719113 (+) True G194748
TU230779 lncRNA downstream 441426 12038503 ~ 12038728 (+) True G194828
TU230784 lncRNA downstream 465758 12062835 ~ 12063498 (+) False LOC113527436
XM_026915192.2 mRNA upstream 6415 11562931 ~ 11564241 (+) True hoxb1b
XM_034309122.1 mRNA upstream 8721 11553204 ~ 11561935 (+) False hoxb6b
XM_034309123.1 mRNA upstream 8721 11558384 ~ 11561935 (+) False hoxb6b
XM_026915193.2 mRNA upstream 18115 11549777 ~ 11552541 (+) True hoxb5b
XM_034309124.1 mRNA upstream 21017 11545150 ~ 11549639 (+) False hoxb6b
XM_026915063.2 mRNA downstream 5522 11602599 ~ 11612358 (+) True nbr1a
XM_026915002.2 mRNA downstream 16822 11613899 ~ 11619906 (+) False tmem106a
XM_034309334.1 mRNA downstream 17364 11614441 ~ 11619906 (+) False tmem106a
XM_026915004.2 mRNA downstream 27519 11624596 ~ 11627564 (+) True arl4d
XM_026915706.2 mRNA downstream 48783 11645860 ~ 11655850 (+) True dusp3a
trnaq-cug_16 other upstream 284388 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1506030 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1935589 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2056821 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2058025 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 875606 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1886224 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1886224 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5258693 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5980206 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile