RNA id: XM_026915440.2


Basic Information

Item Value
RNA id XM_026915440.2
length 1790
RNA type mRNA
GC content 0.49
exon number 3
gene id meox1
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11725403 ~ 11731988 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAAAAGGGAGGTGGGATCACTTGACAGGAATGCCTCAGAACTGTGAGAGTGGCCCATGCAGCTGGGAGTGGATACAGTGGGTTAACCTTAATGCTGAATGAGAGGGTGTGAGAGTGTGGGCCACAActtcttcacacacaacactttcaGAGAGCAcaggactgagagagagagagagagagagatagagaaaggcagagaaagagatgcTGCAGTAACACCACTGCTGGAGGGTGCTTGACCTCACACTTTGTGTTAAGTTATAGACCAACACTCCGAAGCAGTGGAAGAGAAGTTTtgcgagtgagtgtgtgatttgtcAGGATTGACTCCGCAAAATgacgatgtgtgtgtgaaaacaaacgCTAAAGTGGACGTTTCCCACACAGACTTGTGTCAGCGCCAGCCAGCTGCCTCACTGAGGGACTTCTGCTTCacactgggtgtgtgtggtggtgtttgtgtgtgagtgacttcAAACCTTCATTTCTGATTCAGCATGGATCAACCAGCTAGCAGCTGCATGCGGAGCTCTCATCCTGGCAGTGCTCTTTGGGGATGTGCCAGAGCCCCTCACCCTGCCAGTGTCTCCGGAGGCGGTCTACAGCCCTACCAGCAGGCCTCCTTCTCCCTGCATCAGAAACCCGACTTCCTGGCCTACACAGACTTCTCCAGCTCGTGCCTGGTGCCAGCGCCTCACTCATACCCACGAGACGAGAGACTGTACCAGGAGGCGCAAGGCGTATACCAGCGGGCAGAGTGGCAGTTCAGCCCATGTGAGCCACGTGGCAGGGGCCAGGAGCCATGCCATCCAGCTGCCGTGACAGTCGGAGCAGCCGGAGGAACAGACATGGGCAGTGCAGGAGCAGACAGGCTGCCCGAGACAGTGACACCAGGGCTAGAAGGAGATTACTCACCTCAGAGCATAGCCACAACTGATACAGAGAAGAAGAGCTGCAAGAGGAAACGAGAACTCACAGATATCCAGGACTCCGGATTTAAGCCTGACTCAAACTGCAAGGCAAGGAAGGAAAGGACAGCCTTCACTAAGGAGCAGCTGAGAGAGCTGGAGGCTGAGTTCACTCATCACAACTACCTGACCCGCCTGCGCCGCTATGAAATTGCCGTTAACTTGGATCTCACCGAGAGACAGGTAAAGGTGTGGTTTCAGAACAGACGTATGAAATGGAAGAGGGTGAAAGGTGGTCAGCCTGCTTCCCCTCATGACCTGGAAGCAGATGAGTTGGATTCTGCAGCCTCACCCAGCTCTGAGTGATGACCTTGACTTCCACCTTCACTTAGAGACACATCCAGGGATCCCAGGCTGCTACAGAGGAGCCATAAATATGAAACGAAATTAACATGATGTCAGGTTTTCCACCAGTCTCTTCACACATTCAGATAAACTGTTTCATggagggaattttttttttggatggacAGCATTCTCAAGGGCCATTGGTGTGGACATGCTACTAAAGTGAAActcacatatttacattatcCACTTACAAACTGTGAAATTCATACCAGAGAATATATTTGTCAAACATAAATTTGATCCATATTCATTGTTCAAGTTGTGTTTAATAGCTTTCACCTCCAGTGATGACAGTGGCAGATACAGTGGCAGAAGCTTGAAAGCCGCCAGTTACAGGATCACAGGATCCCTCATAATCTGAGGATTGCTCATCCAATGCCAATGCACCAGGCCCCAATgttacatttctttgtttttattataagtCTTGCTGTCAAGTTGTTCTTAGAATATACTTTTTCTATTGAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09322 MEOX, MOX; homeobox protein MOX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230688 lncRNA upstream 6290 11718897 ~ 11719113 (+) True G194748
TU230532 lncRNA upstream 104134 11614389 ~ 11621269 (+) True tmem106a
TU230523 lncRNA upstream 122962 11597530 ~ 11602441 (+) True G194623
TU230527 lncRNA upstream 132312 11592892 ~ 11593091 (+) True G194627
TU230438 lncRNA upstream 346213 11378461 ~ 11379190 (+) True G194571
TU230779 lncRNA downstream 306515 12038503 ~ 12038728 (+) True G194828
TU230784 lncRNA downstream 330847 12062835 ~ 12063498 (+) False LOC113527436
TU230950 lncRNA downstream 408024 12140012 ~ 12140220 (+) True G194989
TU230966 lncRNA downstream 413013 12145001 ~ 12145207 (+) True G195002
TU230980 lncRNA downstream 442406 12174394 ~ 12176119 (+) True G195016
XM_026914515.2 mRNA upstream 55957 11664117 ~ 11669446 (+) True sost
XM_026915706.2 mRNA upstream 69553 11645860 ~ 11655850 (+) True dusp3a
XM_026915004.2 mRNA upstream 97839 11624596 ~ 11627564 (+) True arl4d
XM_026915002.2 mRNA upstream 105497 11613899 ~ 11619906 (+) False tmem106a
XM_034309334.1 mRNA upstream 105497 11614441 ~ 11619906 (+) False tmem106a
XM_026914526.2 mRNA downstream 27993 11759981 ~ 11783433 (+) False etv4
XM_026914525.2 mRNA downstream 28002 11759990 ~ 11783433 (+) False etv4
XM_026914527.2 mRNA downstream 28149 11760137 ~ 11783433 (+) False etv4
XM_026914528.2 mRNA downstream 28623 11760611 ~ 11783433 (+) False etv4
XM_026914524.2 mRNA downstream 28626 11760614 ~ 11784148 (+) True etv4
trnaq-cug_16 other upstream 439135 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1660777 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 2090336 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2211568 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2212772 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 740695 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1751313 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1751313 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5123782 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5845295 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile