RNA id: XM_026915446.2


Basic Information

Item Value
RNA id XM_026915446.2
length 2755
RNA type mRNA
GC content 0.52
exon number 16
gene id spata20
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11795917 ~ 11831664 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACCTCTTGTGGCTGATTTGTGAAGTTGACATTGACAGTGCAGCACCAGACTCACGACTCCGGTCAGCACTGTTGTGTTTGCGGGTTTTACAATGCTCAGATCATGCTGGATTCGGTCACTGTCATCTGCTACTATACCCACAAACTACAGTCTATTCACTggagctttctttaaaaaagaccCAACTCCGAGTCTCACTGTTTCTGTAAGGCGGGACTGTggacacacacctacacacactgacagctaCCATAGACCTCTACCCTGCACTGCGTCCCAGCACAGCTTCAGGATTTGTGGAGCAGCCCGTTTCAGTATGGCATCCGGGAGCGACGGACAAGAGAGTTTACGCCGGCCAAAACACCAAAATCGCCTGAGCAATGAGAAATCCCCGTACCTACAGCAGCATGCCCACAACCCTGTAGACTGgTTTCCCTGGGGTCAAGAGGCCTTCGACAAAGCAAAAAGTGAAGATAAACCCATTTTTTTGTCAGTGGGCTACTCGACTTGTCATTGGTGTCACGTCATGGAGAGAGAGTCGTTCGAGGATGAGGAGATTGGCAAGATCCTCAGTGACAATTTTGTCTGCATAAAGGTTGACAGGGAGGAGAGACCTGATGTTGACAAAGTCTACATGACATTTGTGCAGGCAACTAGTGGAGGTGGTGGCTGGCCAATGAGTGTTTGGCTTACTCCAGCTCTGAGACCATTTATTGGGGGCACGTACTTCCCTCCAAGAGACCTGGGGAGGAGACCTGGGTTTAAAACCGTGCTTTTGCGTATTATGGAGCAGTGGCAGAACAACAGAGAGGCGATTGAGTCCAGTGGGGAACGGGTGATGGACGCTCTGCGGAAGGCCACAGCCATTTCTGCTCACCCAGAAGAAACTCTTCCCCCTGCTGTAGATGTGGCTCACAGATGTTTCCAACAGCTGGCTCACTCATATGAGGAGGAGTATGGAGGATTCAGTGACACACCCAAGTTCCCCACTCCAGTGAACCTGATGTTCCTGATGGCATACTGGTCTGTAAATGGTGCCTCCTCGGAGGGAGCAGAGGCACTGCAGATGGCTCTCCACACCCTCCGAATGATGGCTTTAGGGGGAATTCATGACCATGTGGCTCAGGGTTTTCACAGGTACTCTACAGATTCGTCTTGGCACGTGCCTCACTTTGAGAAGATGCTGTATGATCAGGCCCAGCTGGCAGTGGCCTACATCACTGCATATCAGGTGTCCGGCGAGCGCTTATTCGCAGATGTGTCCCGCGATGTGTTGCACTACGTCTCCAGAGACCTTAGCCACCAGTCTGGTGGATTCTACAGCGCTGAGGATGCAGACTCTCTGCCCACGGCTGAGTCCAGCGAGAAGAGGGAGGGAGCGTTCTGTGTGTGGACAGCTGCGGAGATCAGGGGGCTGCTCTCAAACACAGTGGAGGAGGCCACTGGGGGTGCAACACAAGCGGACATCTTTATGCATCATTACGGTGTTAAAGACCAAGGCAACGTACAGCCAGAGCAGgATCCACATGGAGAGCTGCAGGGTCAGAATGTGCTGATCGTGCGTTATTCAGTGGAGCTCACTGCTGCACACTTTGGCCTGAGTGTGAGCAAGCTGACTGAAGTGCTGGCCAGTGCCAGGGCCAAACTGGCCGATGTGCGCAGAACACGGCCTCCACCTCACCTAGACACTAAGATATTGGCCTCATGGAATGGGCTGATGCTGTCAGGATTTGCCCGTGTGGGGGCAGTATTAGGAGACCAGACTCTGCTTCAGAGAGCAGAACAGACTGCACAGTTTCTCCGGAAGCACCTGTGGGATGAAGAGGGACAGCACATGCTGCACTCGTGTTACCGAGGCGACAACATGGACCTCGAGCAAAATGCCTCACCCATTGCTGGGTTCCTGGATGACTATGCTTTTGTGGTGAGTGGTCTCCTGGACTTGTTTGAAGCTACACACACGGTTCAGTGGCTTCAGTGGGCTGAGGAGCTACAACACAGGCAGGACCAGCTCTTCTGGGATGCCCAGGGAAGTGGCTACTTTAGTAGTGACCCTTCAGACCACACCATACTGCTGTCTCTCAAACAGGatCAGGATGGTGCAGAACCCAGTGCAAACTCCATCTCTGCAATGAACCTGCTGCGCCTCTCCCACCTGACAGGCAAACAAGAGTGGATGCAGCGCTCTCAGCAACTGCTGACCGCCTTCTCTGATAGGCTATTGAAGGTGCCAATTGCCCTGCCCGACATGGTCCGTGGCCTCATGGCACATCACTACACGTTTAAACAGATAATCATCTGTGGCCAGCCTGATGCAGAGGACACAGCCAGTCTCATTGCCTGTGTCAACTCCCTCTTTCTTCCCTATAAAGTTCTGATACTGGCAGATGGTAATACAGAAGGTTTCCTCTACCAGAAGCTGCCTGTCCTCTCCTCATTGATTCAGCAAGAGGGTAAAGCCACTGCCTACGTGTGCCGGGACTTCACCTGTGCCTTGCCTGTCACATGCCCACAGGAGCTCAGGAGACTCCTGCTAGAGTAATGACTGATCGTGCTAAAGTGGCATTATAGGTTTTCAGGGAAAGGGAATAGATGCAGTTTGGTGGAGacagtcacatttttttttccatgtgtgtCATAAGGACACTGGTCAAGAAACAGTGGTGAAATACTGAGATTATAATGGGAATATGTATTCATTAGAAAAACTGCTCTGTATTGCCTTCTCACAATTAAACATACCCTATACCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230688 lncRNA upstream 76804 11718897 ~ 11719113 (+) True G194748
TU230532 lncRNA upstream 174648 11614389 ~ 11621269 (+) True tmem106a
TU230523 lncRNA upstream 193476 11597530 ~ 11602441 (+) True G194623
TU230527 lncRNA upstream 202826 11592892 ~ 11593091 (+) True G194627
TU230438 lncRNA upstream 416727 11378461 ~ 11379190 (+) True G194571
TU230779 lncRNA downstream 206839 12038503 ~ 12038728 (+) True G194828
TU230784 lncRNA downstream 231171 12062835 ~ 12063498 (+) False LOC113527436
TU230950 lncRNA downstream 308348 12140012 ~ 12140220 (+) True G194989
TU230966 lncRNA downstream 313337 12145001 ~ 12145207 (+) True G195002
TU230980 lncRNA downstream 342730 12174394 ~ 12176119 (+) True G195016
XM_026914524.2 mRNA upstream 11769 11760614 ~ 11784148 (+) True etv4
XM_026914526.2 mRNA upstream 12484 11759981 ~ 11783433 (+) False etv4
XM_026914525.2 mRNA upstream 12484 11759990 ~ 11783433 (+) False etv4
XM_026914527.2 mRNA upstream 12484 11760137 ~ 11783433 (+) False etv4
XM_026914528.2 mRNA upstream 12484 11760611 ~ 11783433 (+) False etv4
XM_026915104.2 mRNA downstream 25730 11857394 ~ 12033353 (+) False cacna1g
XM_026915103.2 mRNA downstream 25730 11857394 ~ 12033353 (+) False cacna1g
XM_034309037.1 mRNA downstream 25730 11857394 ~ 12033353 (+) False cacna1g
XM_026915109.2 mRNA downstream 25730 11857394 ~ 12033353 (+) False cacna1g
XM_026915110.2 mRNA downstream 25730 11857394 ~ 12033353 (+) False cacna1g
trnaq-cug_16 other upstream 509649 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1731291 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 2160850 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2282082 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2283286 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 641019 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1651637 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1651637 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5024106 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5745619 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile