RNA id: XM_026915448.2


Basic Information

Item Value
RNA id XM_026915448.2
length 898
RNA type mRNA
GC content 0.42
exon number 3
gene id snu13b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8447927 ~ 8450462 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGAGCATGCGCAGTGCTCTTCTCCCAAAACACGTGTTGCAGGCAGCAGTAGTTCAGTACGTATGCCCCACGTTGTGCTTTAGCGGTAGTTTTGTAGtttagtgttttgtttcttttttgtatttcaagCTTTTGTTTAAAGCCTGCAGGTGTTTATCCTCCGTGAAGCATTCGCCGAGAGGACCTGATCAAATCTCTGAAATCATGACTGAAGCTGAAGTCAATCCCAAGGCCTACCCTTTGGCTGATGCCACTTTGAGCAAAACTATACTGGACCTCGTGCAGCAGGCATCCAACTACAAGCAGCTGCGCAAAGGCGCAAACGAGGCCACTAAAACGCTGAACCGTGGAATTTCTGAGTTCATCGTTATGGCCGCTGATGCTGAACCACTGGAGATCATTCTACATCTTCCGTTACTGTGCGAGGACAAAAATGTACCTTATGTGTTTGTGAGGTCCAAGCAGGCCCTTGGACGAGCTTGTGGTGTGTCGAGACCGGTTATTGCCACGTCCATCACCATTAAGGAAGGATCACAGCTGAAACCTCAGATCCAGTCTATGCAGATGGCGATTGAGAGACTATTGGTTTGAGCCtgttgtgattgttttttttagacttCAGAGTCAAGTTAAATTTGTGTTTCACTTCTATAATCTTTGTATAGTCCTAATGATTAAGGATACTTGTTTTGGTTTCAGtgttacagaaatataataatttctaaTCTTAAAATAAATGGCAGCAATATGTTAGAGATCAGGgcaaatttgtttcatttacagTTCATCACTAGTTGATGTGTTGCTCTTAAATGTGACATTACATTTACtcgttttattttttgtacGACCTTATCCTGGGGACCtcaatatgcaaaaataaattttagaaATGAGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0061053 somite development biological_process
GO:0005730 nucleolus cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12845 SNU13, NHP2L; U4/U6 small nuclear ribonucleoprotein SNU13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228447 lncRNA downstream 11843 8429304 ~ 8436084 (-) True G192937
TU228380 lncRNA downstream 64328 8379227 ~ 8383599 (-) True G192881
TU228139 lncRNA downstream 321370 8071922 ~ 8126557 (-) True G192685
TU228135 lncRNA downstream 352570 8090685 ~ 8095357 (-) True G192681
TU228097 lncRNA downstream 470862 7974214 ~ 7977065 (-) False G192665
TU228459 lncRNA upstream 1735 8452197 ~ 8455303 (-) True G192948
TU228456 lncRNA upstream 13847 8464309 ~ 8541281 (-) True G192945
TU228465 lncRNA upstream 29958 8480420 ~ 8513470 (-) True G192953
TU228466 lncRNA upstream 33146 8483608 ~ 8485178 (-) True G192954
TU228680 lncRNA upstream 477519 8927981 ~ 8928648 (-) True G193138
XM_026915273.2 mRNA downstream 2248 8440187 ~ 8445679 (-) True crym
XM_026914925.2 mRNA downstream 145508 8301334 ~ 8302419 (-) True LOC113527290
XM_026914611.2 mRNA downstream 165065 8269591 ~ 8282862 (-) True adam8b
XM_026915594.2 mRNA downstream 186817 8209345 ~ 8261110 (-) False exoc6
XM_026914607.2 mRNA upstream 64099 8514561 ~ 8521374 (-) True si:ch1073-272o11.3
XM_026914608.2 mRNA upstream 64099 8514561 ~ 8519798 (-) False si:ch1073-272o11.3
XM_026915557.2 mRNA upstream 224267 8674729 ~ 8678396 (-) True wfikkn2b
XM_026915886.2 mRNA upstream 242797 8693259 ~ 8746106 (-) True abcc3
XM_026915887.2 mRNA upstream 242797 8693259 ~ 8746106 (-) False abcc3
XR_004579320.1 other downstream 1853537 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 2671907 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 2833973 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 2974457 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 3145722 5302113 ~ 5302205 (-) True trnai-uau_5
trnap-agg_9 other upstream 7865 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 24797 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 397200 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 626327 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 626656 9077118 ~ 9077199 (-) True trnal-uag_4

Expression Profile