RNA id: XM_034309520.1


Basic Information

Item Value
RNA id XM_034309520.1
length 2947
RNA type mRNA
GC content 0.46
exon number 11
gene id a1cf
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6836437 ~ 6847966 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTAAGCTGGAGGCACCAAGATCTTTCTGTTCTTGGACAAAGGGCTTTGCAtggacacacagaaagagagagagtgagagagcgagagaggcaGGGAGATAGGGCTGGTTAACGTTTAACCCGCCCAGCTTGTAAAGTAGCTCCAGGACAGTGAACCTTTGGAGTTTGATATGATGTGATTACAGAATCACCCCAGTGACATGTTGCCCAGTTTACCAGAATGAAGGTCTGAGTCTTCCATGTGTTGATCTCTGAAAATTGCTCAGGAAAATGGCCAGAGGAGATACGGAGGTCCACCACCTGGTTGGGAAGGCCCACCACCAGAGAGGGGCAGCGAGATCTTTGTGGGCAAATTACCTCGGGACCTCTTTGAGGATGAGCTGGTGCCTCTTTGTGAAAAAtttGGCAAAATATATGAAGTACGGATGATGATGGATTTCAATGGCAACAACCGAGGTTATGCTTTTGTCACCTTCAGTACAAAACAAGAAGCAAAGAATGCCATGAAGCAACTCAATAATTATGAAATTAGGAACGGTCGTctcctgggtgtgtgtgcaagcGTGGACAACTGCCGCCTGTTTGTGGGAGGCATCCCGAAAACCAAGAAGAAAGAGGAGATCCTGGCTGAGATGAAGAAGGTGACGGATGGTGTGGTGGAGGTGATTGTTTACCCCAGTGCCGCTGACAAGAGCAAGAACAGGGGCTTTGCCTTTGTGGAGTACGAGAGCCACCGTGCTGCAGCCATGGCCAGGAGAAAACTGCTGCCAGGCCGGATCCAGCTGTGGGGTCATGCCATCGCTGTGGACTGGGCAGAGCCAGAAGTGGAAGTGGATGAAGACACAATGTCCACTGTGAAGATCCTCTACATCAGGAACCTGATGCTGGCCACGACAGAAGAGACCATTGAGAAGGAGTTCAATGCCATCAAACCTGGTGCAGTGGAGAGGGTGAAAAAGATCAGGGACTACGCCTTTGTTCACTTCACTCAGAGAGAGGATGCTATTGCAGCTATGAACGCATTGAACGGAAAGGTGATTGATGGCTCTCCTATAGAAGTGACGCTGGCCAAGCCAGTGGATAAAGACAGTTATGTGCGTTACACTCGTGGCACAGGAGGACGAGGGGCAGCTCTGCTGCAGGGCGACTACGCCTACACACTGGGTCAGATGTATGACCCCTCAGCTGCATACCTGGGTGCCCCAGTGTTTTATGCACCTCATGCTTATGCAGCTCTACCCAGTCAGTTCCGCTTCCCCACTGCTAAGGGCCATGTGAGCACTCGGGGTCTGGTGCGTCCGCCCTCTGTCAGAGAAATTTACATGAATATGCCTGTAGGGGCGGCAGGTGTGCGCGGGCTGGGGGGTCGAGGCTACCTCGCCTATGCAGGCGTGGGCCGTGGCTGCCCCACGTATCAGCTAAAGTCTGACAAACACCCTGATGACAAACTCTACGATCTTCTCCCTGGCATGGAGCTCACGCCCATGAACCCCGTCACCCTGAAACCACAGGGAATCAAACATGCTCCACAGATCTTGGAAGATATTTGTCAGAAGAATAACTGGGGACAGCCAGTGTATCAACTTCACTCAGCCATTGGACCAGATCAGAGGCAACTTTTCCTTTACAAAGTCACCATCCCTGCTCTGGCCACTCAGTACCCTAACATACACCCGTTCACCCCAGCTAAACTGTGTGCAGCAGTGGATGAAGCCAAAATCCACGCAGCGGAGCATGCACTGCAGACTCTGGGTCTACACACAGAGGGCGCTGAtacttctgctgctgctgctgctgccgctgCCGCTGCCGCAGCCGCTGCTGCTGTGGCATTCCCAGGTTATGCAATCGCCAACACCACTGGCACTGTGGCTGCGTCTCAGCTCAAACAAACTGTGTCTCTGGGGCAGGACCTGACAGCCTACGCCACCTACGAGGGTTATCCAGCGTTCGCTGTCACCACCCGCGGAGATGCTTATGGCGTATTCTAAAACTCATAAGCAGCACAGTGTCTGAACATCCATTctgtatgaatgaatgtgttttgtgtttaattgaGCAGAGATGAATGCTAATGTTGCCTGAATGCCACCTTTGTCCAGTTCACCCTTCATTATATAGAACGCAAGTCAGTTTTTGTCATAAAATACCTTTCATACAAGTtgttaggggaaaaaagtcaTTAGATAGCACCCATACAGCTCTTAAAAGAGACAAGGTTGTAAAACCTGCCTGTGTATGAGATCAGATTTTAAATCTGGTGTCTTTTAGGGTTATTAAAACTGCCATTAAATGTATAGTTAAGActataatatacaaaaacaaacacactgccCCATTGCTAAGGATGTCATATTGCCATACAGCTTTGATATTGATTTCTTTGGTATTTAAAGTTTGTGGTAGTGGTGCAAGTGTTTCAGTATTTaccttaataaataatatatatattaggaaTTTTTAATATAACAAAAACCTAAACATATACTATCATGCTGCAAGgcattttgtcttttctttgttctttttttaaactggcattacactttgttttttagctttataagtttttttttctctgtgctATGACATTTATGATAATATTTCCAAGCTTGCTACCTATGAAAACCTTTGAATATCCCACCTCATCTTTTGTTGGATGAAGAATGTGACATTTTGTCAGATACCTTGATGCCTAACAGTGACAGTATTAAAGTGTGTTTAGCACTTAGAACTTATTTTTATACCTGAATTCCAACACTATTTGTAAGACATTTTAGGATATTGCAAATCATCTGTCTCAATGACTGGCATAAGAACTAGAGGGGAAATCAGAAGAGGGTGACAGGGAggtttttcaaattcaaaacatcATTATGCTGCGAAATAAGAGGGAGAAATGGGATAATTTGGATGTGTCCATCAATAAATTCTGTTCAATTCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227404 lncRNA downstream 21002 6813165 ~ 6815435 (-) True G192074
TU227405 lncRNA downstream 21002 6813548 ~ 6815435 (-) False G192074
TU227407 lncRNA downstream 26679 6808205 ~ 6809758 (-) True G192075
TU227408 lncRNA downstream 27642 6808205 ~ 6808795 (-) False G192075
TU227392 lncRNA downstream 36361 6799642 ~ 6800076 (-) True G192062
TU227735 lncRNA upstream 380424 7228390 ~ 7312887 (-) True G192385
TU227786 lncRNA upstream 552061 7400027 ~ 7400363 (-) False ipmkb
TU227790 lncRNA upstream 580621 7428587 ~ 7428883 (-) True G192437
TU227943 lncRNA upstream 733392 7581358 ~ 7583165 (-) False ccdc6b
TU227946 lncRNA upstream 781345 7629311 ~ 7630373 (-) True G192545
XM_026915154.2 mRNA downstream 70337 6756785 ~ 6766100 (-) True aarsd1
XM_026915156.2 mRNA downstream 83705 6747052 ~ 6752732 (-) True g6pca.1
XM_026915153.2 mRNA downstream 95855 6727581 ~ 6740582 (-) True kat7b
XM_026914793.2 mRNA downstream 189863 6637355 ~ 6646574 (-) True dlx4b
XM_034309642.1 mRNA downstream 242047 6546941 ~ 6594390 (-) True itga3b
XM_026915361.2 mRNA upstream 199605 7047571 ~ 7232075 (-) True pcdh15b
XM_034309523.1 mRNA upstream 201844 7049810 ~ 7232075 (-) False pcdh15b
XM_034309522.1 mRNA upstream 201844 7049810 ~ 7232075 (-) False pcdh15b
XM_034309524.1 mRNA upstream 201844 7049810 ~ 7232075 (-) False pcdh15b
XM_034309521.1 mRNA upstream 201844 7049810 ~ 7232075 (-) False pcdh15b
XR_004579320.1 other downstream 242047 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 1060417 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 1222483 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 1362967 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 1534232 5302113 ~ 5302205 (-) True trnai-uau_5
trnap-agg_9 other upstream 1610361 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 1627293 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 1999696 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 2228823 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 2229152 9077118 ~ 9077199 (-) True trnal-uag_4

Expression Profile