RNA id: XM_026915459.2


Basic Information

Item Value
RNA id XM_026915459.2
length 4492
RNA type mRNA
GC content 0.49
exon number 34
gene id mtr
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 20290593 ~ 20316556 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGCTGTTCACGCATGCGCAGAAACCAGTTAGGGCGCACGCGTCGCGTCGAGCATGTGCAGTAGACAGTGTTTGATTCGCTCACGCGAGAGAGCAGTTTTAACTGGGGTTTATGGGCAGAATTGCGGGGCAAACTAAAGGGGATGTTCATGTTTTAAGGGTGTAAAAGTCTTCGCTGAAGCTGTCCAGGTTGTTTTGGAACACGGTTGAGAATATACGTTTTAAAATGGGGCCGACGGTTCAGTATGAGACAGAAACAGGGGCTGGAGCAGCTTCTCTAGAGGCTGAGCTCAGAGAGACGCTGCAGAAGAGGATCATGGTCCTGGATGGTGGAATGGGTACCATGATTCAGCAGAGGAATCTACAGGAAGACGACTTCCGGGGTCAGGAGTTCAATGATCACCCACGAAGCCTGAAAGGCAACAATGACCTGCTGAGCATCACCAAGCCTGAGGTCATCTATGCTATCCACAAGGAGTACCTGCTTGCTGGAGCAGATATCATTGAGACGAACACATTCAGCAGTACACGGATTGCTCAGGCGGATTACGGGCTCGAGGAGCTGGCCTATCGGCTTAACAAGGCGTCGGCAGAATTAGCCCGGAAAGCCGCTGATGAAGTTTCTGCTCAGACAGGTGTTAAACGGTATGTGGCTGGAGCTGTAGGGCCGACCAACAGAACTCTGTCTGTGTCACCATCTGTGGAAAGACCAGACTTCAGAAACATCACATTTGATGAACTGGTTGAGGCGTACTCGGAGCAGGTTCAAGGGCTGCTGGATGGAGGATGTGATATCCTGCTGGTGGAAACGATCTTTGATACAGCTAATGCAAAGgcTGCTCTGTTTGCTATTGATAAACTGTTTGAGGAGTCGTATGAACCAAGACCCATATTTATCTCTGGGACTATTGTGGACAAGAGTGGCCGTACTTTATCAGGGCAGACAGGAGAGGCTTTTGTCATCAGCGTATCCCACGTAAAGCCACTCTGTATTGGTTTGAACTGTGCACTGGGAGCCACTGAAATGAGGCCATTTATCGAAGTGATTGGGAAGAGCACCGGGGCTTTCGTCATATGTTACCCCAACGCAGGTCTCCCCAACACATTTGGAGGCTATGATGAAACACCAGATTGCACTGCTACACATTTAAAGGAGTTTGCAACGGATGGTTTGGTGAATATCGTTGGTGGCTGCTGTGGTACGACGCCAGACCACATACGGGCCATTGCTGAGAGTGTGAAACAATGCCAGCCCAGAGTTCCTCCGACAGACGTGTTCAGCAATTACATGCTGCTTTCTGGTCTGGAGCCATGGATCGGGCCGTACACCAACTTTGTCAACATTGGCGAGCGCTGCAACGTGGCTGGATCACGCAAGTTTGCCAAACTCATCATGACTGGGAATTATGAGGAGGCATTGAGTATAGCTAAAGCACAAGTGGAAATGGGCGCTCAGGTGCTGGATATCAACATGGATGAGGGGATGCTGGAGGGACCCGTTGCCATGGCGCGTTTCTGCAACCTCATCGCCTCCGAGCCTGACATCGCCAGAGTGCCGCTGTGTATCGACTCGTCTAATTTTGCAGTGATCGAGGCAGGTCTGAAGTGCTGCCAGGGCAAGTGCATCGTCAACAGTATCAGCCTGAAGGAGGGAGAAGAGGCCTTCCTCAAACACGCCAAACAAGTGCATCGCTACGGTGCCGCCGTCGTCGTTATGGCTTTTGATGAAGAAGGGCAGgctacTGAAATTGATCAGAAGGTCAAGATCTGCACAAGAGCCTATCACCTCCTAACCAAAAAGGTGGGCTTTAACCCCAATGACATCATCTTCGACCCCAACATCCTGACCATTGGCACCGGGTTGGAGGAACACAACATGTACGCTATCAACTTCATCAAGGCCACGCGGATTATAAAGGAAACGTTGCCTGGAGCCCGGATCAGTGGTGGTCTGTCTAATTTGTCCTTCTCTTTTCGAGGCATGGATGCCATCAGGGAGGCCATGCACGGAACATTCCTCTACCATGCTATAAAGGACGGGATGGACATGGGGATTGTGAATGCAGGTTCTCTGCCTGTGTATGATGATATTGATAAAGAGCTGCTCGTGCTGTGTGAGAATCTCATCTGGAACCAAGACCCAGATGCCACAGAAAAGCTCCTTCTGTATGCTCAGAACAATGCTAAAGGAGGGAAGAAGGTGATTCAGACAGATGAGTGGAGAAAAGGAAGTGTGGAGGAGAGATTGGAGTATGCCCTTGTTAAGggtatAGAGAAGTTTGTAGTGGAGGACACAGAGGAGGCTCGTGCTCAGACAGATCGTTATTCCCGACCACTCCACATCATTGAGGGGCCGCTCATGAATGGCATGAAGACTGTGGGAGATCTGTTTGGAGCTGGCAAGATGTTCCTGCCACAGGTGATTAAATCAGCCCGTGTGATGAAGAAGGCCGTAGCCTATCTAATTCCCTTtatggagaaagagagggaggagatGATGGCTCTATCCGGAGTGCAGGATGACTCAGATCCTTATCAGGGCACGATAGTTCTGGCCACAGTAAAAGGAGACGTCCATGACATCGGCAAGAACATTGTGGGTGTTGTGCTGGGATGCAACAACTTTCGGGTGATTGATTTAGGAGTGATGATTCCATGTGATCAGATCCTGAAGGTGGCCATTGACAAGAAAGCAGatATTATTGGTTTGTCGggcctcatcacaccatccctCGACGAGATGATTTACGTAGCAAAGGAGATGGAACGTCTGGGCATGAAAATCCCTCTGCTGATTGGAGGAGCCACAACTTCAAAGACTCACACAGCAGTAAAGATTGCCCCTCGATACACCGCTCCTGTTATTCACGTTCTCGATGCATCCCGTAGTGTTGTCGTGTGTTCTCAGCTGTTGGATGAAGGAGTGAGTGAGGATTTCTTTGAGGAGATAACGGACGAGTATGAAGAGATCAGGCAGGATCACTACGACTCTCTTAAGGATAGGCGATACATGTCTCTTGCGCAGGCACGGGAAAAAGGCCTACACATCGACTGGCTCTCACAGCCACCACCAAGTCAGCCACAGTTCCTGGGCACGCGTGTGTTTGACCCATATGACCTGAGGAAGCTGTTGGACTTCATCGACTGGAAGCCTTTCTTTGACGTGTGGCAGCTAAGGGGGAAATATCCCAACCGAGGGTACCCCAAAATCTTTAAAGATAAAACCGTGGGAGAAGAGGCCAGGCGTGTGTTTGACGATGCTCTGCGGCTTCTGAACAGGCTGATTGACAGTAAGGGCCTGCAGGCAAGAGGCATCGTGGGCTTCTGGCGGGCACAAAGCCACGGCGATGACATTCTCGTATACACCGATGATGTCACTCCAACCTTATCTAACCACACTGCTACTTTGTACGGGCTTAGACAGCAGGCAGAGAAGGACTCCGCGAGTTCGGAGCCATACCTCTGTTTGGCGGATTTTGTTGCTCCATTGGAAAGCGGAGTGCAGGACTACGTCGGGCTCTTTGCAGTCGCGGTGTTTGGTGCCGAAAAGCTCAGCCAAGATTTTCAGCGGCAGGGCGATGATTACAGCAGCATAATGGTGAAAGCGCTTGCTGACAGACTCGCTGAGGCGTTTGCTGAGGAGCTCCATGCCCGTGTAAGGAGGGAGTTTTGGGGTTATAGTAAGGAGGGAGATCTGCTGGCTAGCGACCTGCACAAGCTGCGTTACTCTGGCATTCGGCCTGCTCCAGGCTATCCCAGCCAGCCTGACCATACCGAGAAACACACCATGTGGAGACTCGCCCAAATTCAGGAGAAAACTGCTATTGGTCTGACTGAATCACTGGCCATGACTCCAGCTGCAGCTGTATCTGGTCTCTACTTTTCCAACCCCAAATCTACCTACTTTGCTGTGGGCAAGATCACCAAGGAGCAGGTGGAAGATTATGCCAAGAGGAAGGAGATTTCCGTGACTGAGGCAGAGAAATGGCTGGCACCAAACCTGGCCTATGACACCGACTAAGCCACATAACAGCCTGCCCAACAGAACATCTGATCAAAATGGTTTTAAACCTGTGGTTTCGAATGTGGACCCTGAAACTAGATAAGCCAAATTGTTATAGTAGTGGcaaactattattttatttatttttatcaatgACAGTTTGCCTGTCagggtttttcttttaaatgctgtaaatttagTTTTCGCATTTTAAATCCAAGTTCTGGTAAAATTGCACCTTACATACGTATTTAATacgtatttttaaaaagttatataATTGAGCTTATCTGGACGCAAATGCGTGAGATTATTATGGAAAACGTTTTCCACAGTTGTCCCATTTGAAGGGATTTTcccaaataaattatttgtcaAAGCAAGACAAATTATCTCCAAAGATGCTCAAAGTGATTGTCGTAGTTCTTCACTTAATGGTTTTATGTTGTATAGTTGACcatgcctttaaaaaaaaaaaagcatctcaaa

Function

GO:

id name namespace
GO:0009086 methionine biosynthetic process biological_process
GO:0042558 pteridine-containing compound metabolic process biological_process
GO:0032259 methylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0008705 methionine synthase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity molecular_function
GO:0031419 cobalamin binding molecular_function

KEGG:

id description
K00548 metH, MTR; 5-methyltetrahydrofolate--homocysteine methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579191.1 lncRNA upstream 39119 20234815 ~ 20251474 (+) False LOC113527335
TU236496 lncRNA downstream 278685 20595241 ~ 20595444 (+) True G199796
TU237058 lncRNA downstream 1067520 21384076 ~ 21386033 (+) True G200325
TU237068 lncRNA downstream 1140863 21457419 ~ 21457764 (+) False si:ch211-216b21.2
TU237153 lncRNA downstream 1293698 21610254 ~ 21610457 (+) True G200418
TU237157 lncRNA downstream 1323138 21639694 ~ 21643654 (+) True G200420
XM_026915803.2 mRNA upstream 2454 20258874 ~ 20288139 (+) True zgc:165653
XM_026915804.2 mRNA upstream 5018 20258874 ~ 20285575 (+) False zgc:165653
XM_026915022.2 mRNA upstream 61596 20202594 ~ 20228997 (+) True LOC113527333
XM_026915810.2 mRNA upstream 90321 20186824 ~ 20200272 (+) True LOC113527727
XM_034309636.1 mRNA upstream 90463 20186805 ~ 20200130 (+) False LOC113527727
XM_026915117.2 mRNA downstream 2733 20319289 ~ 20500533 (+) True ryr2a
XM_026915119.2 mRNA downstream 2733 20319289 ~ 20500533 (+) False ryr2a
XM_026915118.2 mRNA downstream 2733 20319289 ~ 20500533 (+) False ryr2a
XM_026915124.2 mRNA downstream 2733 20319289 ~ 20500533 (+) False ryr2a
XM_034309514.1 mRNA downstream 2733 20319289 ~ 20500533 (+) False ryr2a
XR_004579324.1 other upstream 723909 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 1478331 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 1479081 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 1780434 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 2131964 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 1686268 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 1691955 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 2481625 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 2889110 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 3007517 23324073 ~ 23329571 (+) True G201214

Expression Profile