RNA id: XM_034309362.1


Basic Information

Item Value
RNA id XM_034309362.1
length 4402
RNA type mRNA
GC content 0.42
exon number 5
gene id wnt3
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 23132483 ~ 23167487 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAAAAGATATGTACCTTAGGGAAGAAGctcagagagagggagggatagaGACGACGGGTAGgagcgtgtgtgaATCTACAGGGGACTTCGTATTCCGTCCCCTCGCTGGAAATCCTATGTTCTGATCAATAGACATTTCCGTCCACACAAGAAGACATACCTCATGGATTTGTACCTTGTTGGATATCTACATCTTCTGTGCGTGTGGTTGTCCAGCTCTCGGGTGCTCGGAGGCTATCCCATCTGGTGGTCCCTAGCTCTGGGGCAGCAGTACTCGTCTCTGGGCTCCCAGCCCATCCTGTGCGGCTCCATTCCTGGTCTAGTGCCCAAGCAGCTGCGCTTCTGCCGCAACTACATCGAGATCATGCCCAGTGTTGCCGAAGGGGTCAAACTGGGCATCCAGGAGTGCCAGCACCAGTTCCGCGGTCGCAGATGGAACTGCACCACCATAAAGGACAACCTAGCCATCTTTGGCCCTGTGCTGGACAAAGCCACTAGAGAGTCTGCGTTTGTCCATGCAATTGCCTCTGCTGGTGTGGCATTTGCAGTGACACGGTCCTGCGCAGAAGGAACCTCCACCATGTGCGGCTGTGATTCCCACCACAAAGGGCCACCAGGTGAGGGCTGGAAGTGGGGTGGCTGTAGCGAGGATGCCGAATTCGGGGTGCTCGTATCCCGAGAGTTTGCAGATGCCAGAGAAAACCGGCCAGACGCCCGTTCCGCCATGAACCGGCACAACAATGAAGCTGGACGAATGACCATCCTGGAGAACATGCACCTGCGCTGTAAGTGCCATGGCTTGTCAGGGAGCTGCGAGGTGAAGACATGCTGGTGGGCACAGCCCGACTTCCGCTTGCTGGGCGACTATCTGAAGGACAAGTACGACAGCGCGTCTGAGATGGTGGTGGAGAAACACCGGGAGTCCCGGGGCTGGGTGGAGACACTGCGAGCCAAGTACGCCTTCTTCAAGCACCCCACTGAGAGAGACCTGGTCTACTACGAGGGCTCTCCCAACTTCTGCGAGCCAAACCCGGAGACAGGCTCGTTTGGCACACGCGACCGCACCTGCAACGTGTCGTCTCACGGCATCGAGGGCTGCGATCTCCTCTGCTGCGGCCGCGGCCACAACACGCGGACTGAAAAGCGCAAAGAGAAGTGCCACTGTATCTTCCACTGGTGCTGCTACGTCAGCTGCCAGGAGTGCGTACGAGTCTACGACGTACACACGTGCAAATAAGGAGTGCGAGAAGTGCAGGGGTGGCAAGGAAAGAACATAAGACTGAAAGAGATAGGACTGAGTAGCCTAtgcgtgtacacacacacacacttactcacaaGATTGTATTGAATACAGAACACACATCGTGGGTAGTGGCACTTCGGTACCTGAACTTTTAATATCCTTTAATAACAGTCGAGCCTCTTTTCTGGGAGAATTAGCTACCATGTGATTACCACTATCATTCCTGAtgcattcctttttttatttatttcagctgtGGTGTGTTGAAAGAGTGTAGCACATTATTACCTGAACCCTCAATGTCTTCTGGTATCACTCTACCTGTCACTCTAGCTCTCTGATCGTCTCTCCTCAAGGCCTGGTGGCTGAAACCGTATCTGCccaacacactctcacactacGCAGACATGAACAGAGCTAGAGGGGGCTGGTGAGAGAAGAAAGGGGTGAAGGAGGGAGTGCGCTTACTTAACTACTGATCATTCAGAGCCTGAAGTGCATCTGAAGGCTGGGGTCTTTAAGCCCGAATAGACTACTGATACTGACGTAATCCTCATACTTTCCCTAATGTCTTCCCTGATCCTGCACAGGTGCACCAGTTAAAGGAgtactccagcatttttcaacATAATAGctatctactgcatctgtagcGTACGTGTAATTTCTacagacaagaatttcaacacatttctcTGTACACAGAAAATACAGACAACTTGCATATGAGGGAAGTCTTAGGGTAGTTGTTGAATTCAATCgatgtttaaaatatgtgattaaattattcaaaaaatTCAACCGATACACTGGATTccctttacaaattttatgaaaatttCTTAAAATGGAATTCTATGGACAGGAATTCTGtcaataaaagttttaaaattcatgactaaataaactaaattaatgactaaataatgcaaaattacAACTGTTACACTGAATTccctttacaaattttataaaACTCACTTATATTtaaagtctaagggcagttgctgATTTCTgccaataaaattttaaaaaataaacgactaaataaagcaaaatgacaaattttcattttcacattttataaaaCTTACCTATAATGGAAGTCAATGAATTCTctcaataaacattttaaaatttgcaaCTAAGTAATGTGAAATCACAACAGTTATACTAGCTTCAAATGACAAGAAACACTCTTATAATGGAAGTCGAAAGGCAGTTGTTAAAAATTCATAACTGATTCAATTATGCAAAATTACAGCTGTTACACTGAATGCCCTTTACAAATTTTTATAAAACTCACTtctaatggaagtctaaggacAGTCATTGAATTCTgtcaataaaattttaaaatacacacaaaatacgaataaataacacaaaatgagTAGATTTCATTTACAAGAAACTgatttttgcaaaatatttttgctatttgtaaataaagctCTTAATCTATACAATTTGTCTTTTCAGAGACATTTTAAATAGAAGAATTTATGGTTATGACAAAGTTACCCGTATGGTCCTGGTTGGAGCATGAACCACAGaataagcaattttttttctctattgtTCCAGTGTTGGACAAAACTTTATAAGAACAGCTTTCTTTCATATCTGTCTCATCTGAACACTTTTACTGTCCCAGTCCAACTGATGGAAATGTAAATTTGCATTGTTTAAGTCACGTTTTAAACGTTAATCGAGGAAATTCAACATGGACTTGGACTTCCATTATAAGCGAGTTTGGAGTGCACAGATTTTCAGTTCATTTCCCAGAAAATTGAACTTCTTGTGTGTGATAATCATACGTAGAGTAAAGATGTAAAGTAtggagattaggttgaaaaacactggagtattcctttaagtaGTCACTGgtcactgattacacacactgatctacatgtacagaaaaataaatgcatcaagGTTGCCTACTGAACATGTCCAGAAccataagggaaaaaaaagaaacctcaTTAATGAAAATAACGCTGTAATGCTGAAATGACTCAAACGGTACGATTTTGGCCATGAGATCAACTCTTATGTGATGCGTTTccttttttgaaaattttaatttatgatgGTGGTGATTAGAAGGAAAAGAGCAGGTGTGTATAAATCGACTACCTGTCTAAACAAAGCCAAAGTGTTTTCAGGTAGAAGCCAAAccaccatcaaaacacacacacacacacacacacacacacaaacttcatGTGCATTCAGAGTTTTAGAGTTAAATTTGCACTTACGAACACACTGAGCAACAGAACGAATGTTAGGAGTTTTATATATAACCTTCTAACCTTCTCTAACATCTATAGATCTTGGAAAGGGAGAGGATAAATTGGGATTGGGAGACTTTATGTGTTAAACTCTTAAGTTGTTGTCTAACTGCTGTTTGGACGTTAAAAGGCGAAGCGGTCTGGGTGTCCTGacccgagtgtgtgtgcgatggcTGACGTCGAGGGGGAGGGACGACGGGCttcacagacaaacagacaggcaCAGGGTTCCATACATGTTCCAACAGTCCTACACACATCCCATTCATTAAGTTTAACTACAGAAGCAGAAGGTAGACATTAGCGTTGTCTCCTTGAGACTGAATCGTCCGCTTAACACCCACatccacatgcacatgcacatggtCTCCCTCTTCCCACAAGCAGCTCCGCCCGGCATCACTGGTCATTTCAGCACTCCCTTTCTGCTCCTCCCAGCCCGCTATATATCCAAAGTTTTGTACAAAGTTATTaattccctttctttttttttttttattttatcgtctggaaatgttatgtttttataaatattatttattatacaatgTATATATCTGTATGACTGAACTAAGATTATATATTTGAAGAACAACTTACTGTCTCATGCTTTTGCTTCTAAATTCTGCTTTTATTCTACTACTTTATGGATAAATTGCTATattattgcttttgtttttaaagttagACATACTAAACTCCTAAACTAACCAAACCATATTATATAAGTGACCTTACATTACACCTAGTTAACCCAGTTTAACTTATTTGCTCATTAGTGGTTAAGAGAACGGTGGCCCAAACTGTTTCCAGTTTCCCACGCAGCTCTAATAAAGGGTAATGATCTTCCTCTTG

Function

GO:

id name namespace
GO:0021794 thalamus development biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237895 lncRNA upstream 26616 23104676 ~ 23105908 (+) True G201077
TU237911 lncRNA upstream 29025 23103284 ~ 23103499 (+) True G201093
TU237831 lncRNA upstream 263686 22866908 ~ 22868838 (+) True G201019
TU237612 lncRNA upstream 784406 22347890 ~ 22348118 (+) True G200807
TU237582 lncRNA upstream 890212 22124233 ~ 22242312 (+) True G200784
TU238015 lncRNA downstream 101140 23268627 ~ 23269419 (+) True G201186
TU238014 lncRNA downstream 101305 23268792 ~ 23269419 (+) False G201186
TU238025 lncRNA downstream 105087 23272574 ~ 23398660 (+) False polr2a
TU238060 lncRNA downstream 144591 23312078 ~ 23313405 (+) False LOC117595720
TU238079 lncRNA downstream 207587 23375074 ~ 23380990 (+) True G201234
XM_026915340.2 mRNA upstream 279028 22849303 ~ 22853496 (+) True LOC113527478
XM_034309562.1 mRNA upstream 284959 22810078 ~ 22847565 (+) False pkd1b
XM_034309564.1 mRNA upstream 302665 22807179 ~ 22829859 (+) False pkd1b
XM_026914971.2 mRNA downstream 71810 23239297 ~ 23265400 (+) True hdlbpb
XM_034309602.1 mRNA downstream 143773 23311260 ~ 23318154 (+) True LOC117595720
XM_034309049.1 mRNA downstream 148106 23315593 ~ 23321228 (+) True LOC113527736
XM_026915816.2 mRNA downstream 148109 23315596 ~ 23321228 (+) False LOC113527736
XM_034309273.1 mRNA downstream 214257 23381744 ~ 23398663 (+) True polr2a
TU237829 other upstream 261240 22798181 ~ 22871284 (+) True mrpl27
XR_003402874.2 other upstream 1120220 22008511 ~ 22012304 (+) False srsf2a
TU237322 other upstream 1129250 22002824 ~ 22003274 (+) True G200571
XR_004579324.1 other upstream 3565840 19526642 ~ 19566684 (+) False LOC113527713
TU235479 other upstream 4321012 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU237980 other downstream 38179 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 156586 23324073 ~ 23329571 (+) True G201214
TU238026 other downstream 190024 23357511 ~ 23398660 (+) False polr2a
TU238950 other downstream 1214300 24381787 ~ 24382287 (+) True G201962
TU239119 other downstream 1493738 24661225 ~ 24665525 (+) False LOC113527710

Expression Profile