RNA id: XM_026915487.2


Basic Information

Item Value
RNA id XM_026915487.2
length 2974
RNA type mRNA
GC content 0.47
exon number 4
gene id shisa9a
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10912118 ~ 10937879 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctcagtgtgacGCGCAGAGTCCGCTGTTGCCCGCGGTTTTGCTCGGAGGCTCTGCACGCGCACACagcatcactcacacacagactgcgCGCTGCGCTGAAAGTACAGTAAAAACCTTTCAGTGCGCTTGGACTGAACGCACAACAACCCCTGTGGACTTTACCAGTGTAGGTCCAAGAAAACTGGAAGAAAAGAAATCtaagaaaaatgatgaaaagcaCTCCGCATGGGTACAATTTCGTCCTTACATTTCTGTTCTCTTCCACCTGCTAGCCGCTGGCACTGAGATCGGGAGCAGGATGAGATGGACGGTCTTGCTGTGGGAGTACCTGTTGGTGGAGGTCACGGCGCTGGTGTGCAGGGCGGATGGTGAAGCAGAGCGGCGGCTCGAGGGATTCGTCGTGCTGTCGGGCTCAAACGGCTCGGAAGAGAGCGGCGTGTCCGAGAAGCCGCACACGCAGGACGAGTGTCGCGGCTACTACGACGTGATGGGTCAGTGGGACCCGCCGTTCGTGTGCCGCACGGGCACCTACCTGTACTGCTGCGGCACCTGTGGCTTCCGCTTCTGCTGCGCGTACAAGAGCTCGCGCCTGGATCAGAGCTTGTGCACAAACTACAACACACCAGTGTGGCTCAAAGGCCAAACGCCGTACAAGAAGACGGACCCGAGGCACGATCCGACCAAGGACAAGACCAACTTAATCGTGTACGTCGTTTGTGGAGTAGTGGCCATCATGGCGCTCGTCGGGATTTTTACCAAACTTGGACTGGAAAAGGCGCAGAGACCTCACAGGGAAAACATGACTCGAGCTGTAGCAAGTGTGATGCAAGGTGCCTGTCAAGCTGAACATGAAGAAGCCATCGGAAGACATGCACAGAACTATGACAACATGCAGGCGAGGGCAAACAATATGCaGGGAGCCCAAATGCACAACATGAGCCAGGCCCACCCCTATCCTGTCCTCAGCCAGCTGGCCCATGTGTACGAGCAACAGCAGCCTGGCAAAGAACTCAATAAATACGCCTCACTAAAGGCTGTTGCTTCAAAAGTCAACGGGGGCTTCTACAACAAGCAGCACTGCCACTTGACAGAGTTGGGAGCGAAGGGCAGCCTGCCCCTCCACTTGACAGAGTTGGGAGCGAAGGGCAGCCTGCCCCTCCACTTGACAGAGTTGGGAGCGAAGGGCAGCCTGCCCCTCCACTTGACAGAGTTGGGAGCGAAGGGCAGCCTGCCCCTCCACTTGACAGAGTTGGGAGCGAAGGGCAGCCTGCCCCTCCACACAATGAGGATGGAGCATGTGGAGCCCACTGCCTCATATGTCACCGAGATCCCCATCCCCAAGCAGAATGAACAGAAACCCAAGCCCACCAAGCCCCATGTGCCACATCATCATATGGCCTACAGCTCCAACACCATAGCCAACCCAGGAATGCTGAAGGCGTGGGAGGGCACAGAGACTGTGGGTCGGCGCAAGACCTATGGCCCCAGGAAGCCCTGCATGGTGGGTCAGATGAACGAGCTCCACACTGCCCGCAGTCACCACTACCTACCCACACAACCATACTTCATAACCAACAGTAAGACAGAAGTGACTGTGTGAAGGAATGACTTGTCTCTGAAGGGCTCATCAGTCTTTGTGAGCAGGAGAAATGGATCATTATCCTGACTGTAACCTTCACTCTGCCCCTTGGGGAATGGAGGCGTAACTGCAGACGTGAGCTGGTCACACCATGATCGGCCACACAACCAGGCGGTCAGCAAGCAATGACAACAGCTGAACCAGGAACATTCCattgtttttgtgaaatgttCACTATAATTTATATCCATGCCAATGATGATATGTTTGTGTTCAATCAGTGAGATAATAagcagttttaattaaaatcaatcAGAAAGGAgtcaaagcaaacaagcaataAAAGCAATCTAATAAACTGACAAAGAAGAATAATTGGGAATAAATGTTTACTCCTGTAATTAAGAGGAAATAAGTGCAGTGCTGAACCCAAAGGTTCAAGGGCTAGTGTGGCATGTTGAGCACAGGGCCAGTATTCCTTACAGTACCACAGCTGATGTACATGATGTCTCTTTAGCACAGTTATCTCTCATATGCTGCTGAGACTAAGATCATACTTATTGTATCTAAAAATATTTAGTGGCAGATGCCTTATTTGAAGACATCCCGGAAAGACGTGAACTGTTATATCACGGACTGGTATTTTAGGGCTGTACCTTTCATTTTCATACTAACAGTCCTCACTGTGTGTAGAATAACAAACTcccaattcattcatttactttgTAACAAGCCCCCAGAAATGTCATTCTTAAGAAATGGTATAATCTCTTAGACAGCCAGTTTCTGCTGTATTTGTTTCAGAGTGCCATGAGGTAGCATGTGAACTGGAGACTGTAGAGTAAAAAGCACTGTTAACTAACATGATCGCTCTGCTACAAATTGTGCCTGATGGCTCTTTAGCTTTGGAAATGAGTATTTGACCTCCCTTCAGTatagttaaaatgtttttttttaatgtgttgtaTTGTATCCTCTTGAAGGCATTAAAGCTTATTGTACAATATTTCTTCATGACAATAGATGTATGTGCAGCTAAGTTGCAACCACTGGGTTTTAGCACTTTTATTTCAGTAGTGAGTAGATTgggggaggcttttttttttccacacagacCTTCTGgtgaaattgatttttaaagtatatatatttatactcttGCCAGTATATGTATGCAAATGATACAGTACATTGTGCCAAGAATTAGCTTGTTAaagttgtgtttaattttatcTATTTGTCTTTTTCACTCACTTGTACATtccaaatgagaaaaaaaaggtttcttctGTGGCATCACAGTATAAGGGGTGTGGTTGTTTTGGAAATAATGATATCTTTCAAAATCAAGTAATGATATTGGAATAAAATAAGCATTTCTTCATTCTCTCCA

Function

GO:

id name namespace
GO:0048172 regulation of short-term neuronal synaptic plasticity biological_process
GO:0032591 dendritic spine membrane cellular_component
GO:0045202 synapse cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402886.1 lncRNA upstream 122101 10788767 ~ 10790017 (+) True LOC113527761
TU230004 lncRNA upstream 131234 10780663 ~ 10780884 (+) True G194201
TU229892 lncRNA upstream 200103 10711321 ~ 10712015 (+) True G194113
TU229857 lncRNA upstream 251168 10659878 ~ 10660950 (+) True G194087
TU229853 lncRNA upstream 265665 10644938 ~ 10646453 (+) False msrb1b
TU230092 lncRNA downstream 27071 10964950 ~ 10965617 (+) True G194276
TU230097 lncRNA downstream 27759 10965638 ~ 10968033 (+) True G194278
TU230188 lncRNA downstream 124285 11062164 ~ 11063682 (+) True G194365
TU230113 lncRNA downstream 155284 11093163 ~ 11096178 (+) True G194293
TU230204 lncRNA downstream 182439 11120318 ~ 11120550 (+) True G194380
XM_026914993.2 mRNA upstream 90940 10812145 ~ 10821178 (+) True ubald1a
XM_034309529.1 mRNA upstream 132543 10754919 ~ 10779575 (+) True rhbdf1b
XM_034309528.1 mRNA upstream 132543 10754921 ~ 10779575 (+) False rhbdf1b
XM_026915530.2 mRNA upstream 132543 10755042 ~ 10779575 (+) False rhbdf1b
XM_026914752.2 mRNA upstream 183567 10726693 ~ 10728551 (+) True aqp8a.2
XM_026915656.2 mRNA downstream 159086 11096965 ~ 11100503 (+) False maff
XM_026915654.2 mRNA downstream 159154 11097033 ~ 11100503 (+) True maff
XM_026915655.2 mRNA downstream 159339 11097218 ~ 11100503 (+) False maff
XM_034309087.1 mRNA downstream 198978 11136857 ~ 11141931 (+) True si:ch211-141o9.10
XM_026914568.2 mRNA downstream 198978 11136857 ~ 11141931 (+) False si:ch211-141o9.10
trnal-aag_8 other upstream 847492 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1277051 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1398283 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1399487 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 1399878 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 348318 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 1534804 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2545422 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2545422 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5917891 16855770 ~ 16863495 (+) False anapc16