RNA id: XM_026915490.2


Basic Information

Item Value
RNA id XM_026915490.2
length 4458
RNA type mRNA
GC content 0.48
exon number 7
gene id mapk7
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5682041 ~ 5689581 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCCATTGGACAGTCGcgctgtcactcacacacaacacgGAAGAATAGAAGGAAGTAAAAAAGGTTTGCGATAGCCATTCCAGAGAAAAGCAGGCATGCTTTGACAGAAACGTTCACAGGATCATCGCTATCCTGATAATTATAAGGTCCAGGATGTCATCCAGTGAAGTTGAGAAATCAAAAGACTCTGTAGCCAACAGTAAGAGGGAGAGTAACAGTGACAAGAATCAACAAGCACCTGAGCTGGAACATCACTCCCAACCTGTCAACGATGTGTCAACCAATGCAGATGCAAGTACTGTGGCTGCGAAGAACCTGGCACTTCTTAAAGCCCATTCTTTAGATGTGAAGTTTGAGGTTGGTGAAGAGTATGACATAATCGAGACCATTGGCACAGGTGCCTATGGCGTCGTATCATCTGCCAGGAGGCGGGACAATGGGCAACAGGTGGCAATAAAGAAGATCCCAAATGCCTTTGAAGTTGTGACAAATGCCAAACGCACACTTCGAGAGCTCAAGATcctgaaacactttaaacatGACAACATTATTGCAATTAAGGACATCCTTCAGCCTGTGGTACCTACCTCAGCCTTCAAATCAGTGTATGTAGTCCTTGACCTAATGGAGAGTGACCTGCATCAGATCATCCACTCAAAACAACCTCTGACCCCTGAGCACACACGCTACTTTCTGTACCAGCTGTTGCGTGGCCTAAAGTACATCCACTCAGCCAATGTAATCCACCGCGACCTGAAGCCGTCCAACCTGCTGGTGAATGAGAACTGTGAGCTGAAAATTGGGGACTTTGGCATGGCCCGGGGTTTGAGTGCTGCCCATGCTGAGGAGTCACGTTCCTTCATGACAGAGTATGTGGCCACACGTTGGTACCGTGCACCCGAGCTCATGCTCTCACTTCACCACTACAGCCTTGCCATTGACCTCTGGTCAGTAGGATGCATCTTCGCCGAGATGCTGGGTCGGAAGCAGCTCTTCCCAGGCAAGCACTATGTGCATCAGCTGCAGCTGATTCTCTCCGTCTTGGGTACACCTCCTGAGAGTGTGGTGGGTGCTATTGGAGCAGAAAGGGTGCGCTCTTACGTCCAGAGCTTGCCTTCCAGGGCACCCGTGCCCCTCACCAGACTGTTCCCACAGGCTGAACCTGTTGCTCTGGACCTTCTGAATGCCATGCTGCGCTTTGACCCTCTCGAACGGATTAGTGTCTGCCAGGCACTAGAGCACCCTTACCTTGCCAAGTACCATGACCCAGATgatgagcctgtgtgtgtgcctgcctTCGATTTTGAGTTTGACCGACAGCCCATGGGGCGAGAGCAGATCAAGGAGGCCATACTTGCTGAAATACAGGACTTCCACAACAAGAAACAAGGTAGCAGGAAGATCCAGTTCAAACCACTCCAGAGATTGGGACAAGGGCCAGGGAGCACAAATAATCATGCCTATCCAATGGTGCCCAGTACTCAAAACCAGCCAAATGTTACACACCCTCAGCAGCAGAAAGCAAGTCAAAATTTGGTCATAACACAGAGCTCAGTCACCTTGGCTCCTTCATTAAATAAGCAAGCTCCTCCACCTGATTTTACCCATCTTGCCAATTATTTGACACCATTCACAAGAAGCTGTCAGGATGTGGACATGCCCAGTGCAAATTCAGATGGACAACCAGAGACCATAGACCTTACCACTCCCACATCCAGCCAAGGCACACCACCTTGTGAACCAACTGGAGACTGCACCAAGAGGGAGGCTTCTGCAAATCAAGCTCCTGCTGTACAGACAATTCAGAGCCAGGCACTCCACCAGCCATCAGCCTCTACAGCACCTCCATCCAGTCTTACAAAATCTGGGGCCTCCCTTTCTCTATCTCAGATGCAagctcagtctctctctcagtcacttTCTCGTTCACTTGGAAAAGGGGGGAAAGGAACTTCTGGGGAGACCGCTAGAAAAGAAGGGGCAATTTCAGATGATACCAAAGCAGCACTCAAAGCAGCTTTGCTCAAGTCAGCACTAAGGCAAAAGGCACGAGATGGAAGTGCTGCAGCCCTGGGTATAGACCTGGGCAGCGGAACTGCAAGCTCATCTTCCTTGGTTTCGTCCTCTGGTCCAGAACACAGGAGACCTGTTACAGCACAAGAGAGACAGcgggagagagaagagaaacgaAGGAAAAGACAGGAACGAGCAATGGAGCGAAAGaaaaagatgagagaaaaggagaaaaaagaaggcAAATCAGGCGAGTCCTTGGGTGGCGTCGTGCTGAGTGACAATGACAAGAAGCTGCTGGAACGGTGGGGACGAATGATGGACAAATCACAGGTCATCGACAATAATCCTACTAACTCCAGTAACAGTAAGACAGGTTCTTGCCAGATGCAGGCAAACATGGGAAAAGGCCTGATAAAGATGTCATCAGACACTGTGGAATCAGTGCCAGACAAACAACCAAGTGAGTTGCAGGTGTTCAAACCACCCCAACAAATAGTGCCTCAGATTGGCCAGTGTGTGGCATCTGGAATGTTTCATCCACGTGCCACCTTCAATTCCCTGTCAATTCCCCTAGGGTCCACTCAAAATGGGGACATTGGGATGGTGGCAgttggtggaggtggaggtgtagGGGGTGGGGCTCTGGCCATAGTTGGAGGTGGGACACTTGGTGTGGTTGCAGCCCAATGTACCCTTGCCAAAAGTGACACCTTAAAACCCCAACCTCCGACTCAGTTCCAGGGGTGTCGGACAGTATTAACCACAGTAGGGAACTGGACAGGGAACCAGGCCAGTGGAGGAACAGCACAGCAGCAAGCACAAATACCACACCAGTCTCAGCAGATCCAGCTGTCTCCTCCACAGCTGAGCCATGTGAGCTTACCCCAGCAGTCAGTTCTGCTCACTCAAACCCAGTCTCTTCCACACCCCCAGCAAACCCAACCTCTTATGCACCCCCAAGAAACTCAGCCTCTTCCTAGCGTTGAAATGCCCATCACTAACCCTCCTGTCAAACTCTTCTCATCAGACTCCTTCATTAGCAAACCTCTAGCATTGACTCCCAATGGGACGACAAGAGTTGGAATTCAGGACACCAGCAGGTCTCTGCCTACCCAGGACTCAGTACATGCTTCTGAGCCCCTGGAGAAGTTGTGTTCTGCCCTTGGCAAGCAGCAAAATGGTACTCCTTCACATGAACCTTCTCATGGGGCACCTGGATCATCAGCCCAAACCTGCCTGACGGACACGGGGCTACCAGTGAGCTCCAGAGCACCAGACATCCATACAGTCACACTACAGCTGTCTAAGTCACAGGTTGACGATATTTTGCCCCCAGTTTTTTCTGTGACCCCCAAGGGCAGTGGGGCTGGATATGGCGTCGGCTTTGATCTTGACGAGCTTCTTACTCAGTCGCTCACTGACCTCCAGCACTCAGACCTCAGGGAAAGTCACAACGACTCTGCACCCCTCTCCGCATCCTTGCTCTCAGATTGGTTGGAAGTACACCGCATGACCCCAGCCGACTTGGAATCACTGCAGCAGGAGCTTCAGCTTGGATCTCCCATGATTCTTTCTGACAACTCCAACCTCCCTTAGACTAGATTCTAGTCTAATTCCCATCATGGCAATATGGCACCTTAATTTATTCTACCCAAGATCATGTACTATACCTCTAAAACAAGTGCCAACTTCACTATATACAGTAGTTAACGGTGAAGAAAATTTCACGGTTATAGGGTGTAGATTCCCCCCCCCAGTGACTTCAAAAGACAAGTATGGCATGCTGTAGATTCTCTAATACACCTGTTCAGATTGTTTTTCAAACAATCGTTTCCTCTATCCATATACATTTGGTCAAGTTTTACTCCTAAGAATTCTAACAAGTCTAACACATGGCTAAAATTGCTACCATTCATGACCAAAATGGAGGCCTAGATAGCAGTCTGGTGCTAATTTGGTGCTAAAATGAAGCATTTCAGCTAATAAAAGTATAAACTGGGTCACAGGCAATAGGTTGATCTCTATCTCTAATTTTGTTTTGTGCCACAATCTTGATATTGAAACTGAAAATCTGATCCTTTGAGACAGAAACTTAAGATTTACCTATTGGCAGCTAAGACTAACTGCAGCAGAATGTAGAAGCACTACAAAAGGATTCTACTTGTGATCCCTAGGTGCACTCAAACTACAACAAAGGCACACTGAGCACTCACTGCAGACGAACTCAGACTGAAAAAGATCAACCATTGCCTTGGAACCATGTTCATTGTAAACACAAAACCCACCAAGAGTGAAGTGTTAAGAGCAGGTAGAAGTTACTAAGCAGGTTTGATTGGGCATTTCATGAATACATTTTAGGTATTAGTGTTCAGATAAATGATTTTGCACCAGCATGACAAATAACATTTGTTTGCAATAAAGGAACAAAAATGATAAGTCAA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04464 MAPK7; mitogen-activated protein kinase 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226561 lncRNA upstream 9546 5672142 ~ 5672495 (+) True G191387
TU226560 lncRNA upstream 10789 5671014 ~ 5671252 (+) True G191386
TU226549 lncRNA upstream 14439 5596722 ~ 5667602 (+) True G191375
TU226496 lncRNA upstream 62933 5614407 ~ 5619108 (+) True G191329
TU226475 lncRNA upstream 168886 5512691 ~ 5513155 (+) True G191310
TU226663 lncRNA downstream 33248 5722829 ~ 5723604 (+) True G191472
TU226687 lncRNA downstream 50583 5740164 ~ 5740905 (+) False LOC113527671
TU226695 lncRNA downstream 83319 5772900 ~ 5776010 (+) True G191497
TU226794 lncRNA downstream 216883 5906464 ~ 5908176 (+) True G191568
TU226819 lncRNA downstream 251040 5940621 ~ 5940847 (+) True G191588
XM_026914970.2 mRNA upstream 16074 5626391 ~ 5665967 (+) True LOC113527309
XM_026914933.2 mRNA upstream 182296 5494906 ~ 5499745 (+) True tbx6
XM_026915824.2 mRNA upstream 197364 5477331 ~ 5484677 (+) False nif3l1
XM_026915825.2 mRNA upstream 197364 5477475 ~ 5484677 (+) True nif3l1
XM_034309633.1 mRNA upstream 197364 5477746 ~ 5484677 (+) False nif3l1
XM_026915697.2 mRNA downstream 40573 5730154 ~ 5740896 (+) True LOC113527671
XM_026914736.2 mRNA downstream 57292 5746873 ~ 5766384 (+) True mmp25b
XM_026914737.2 mRNA downstream 57292 5746873 ~ 5766384 (+) False mmp25b
XM_026915189.2 mRNA downstream 251368 5940949 ~ 5964560 (+) True kansl1a
XM_026915142.2 mRNA downstream 334186 6023767 ~ 6061324 (+) True scn4aa
TU226411 other upstream 341478 5337253 ~ 5340563 (+) False LOC113527051
TU225934 other upstream 842672 4755097 ~ 4839369 (+) False G190865
TU225847 other upstream 1086928 4593107 ~ 4595113 (+) False lrrc18b
trnae-cuc_25 other upstream 1248729 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225438 other upstream 1899546 3782131 ~ 3782495 (+) False rasd1
TU226808 other downstream 280162 5969743 ~ 5983237 (+) True G191581
trnas-gcu_1 other downstream 526264 6215845 ~ 6215926 (+) True trnas-gcu_1
trnal-aag_2 other downstream 526786 6216367 ~ 6216448 (+) True trnal-aag_2
trnal-uag other downstream 533136 6222717 ~ 6222798 (+) True trnal-uag
trnas-gcu_2 other downstream 533955 6223536 ~ 6223617 (+) True trnas-gcu_2

Expression Profile