RNA id: XM_026915511.2


Basic Information

Item Value
RNA id XM_026915511.2
length 2045
RNA type mRNA
GC content 0.48
exon number 3
gene id lrit2
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25007848 ~ 25013291 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACTCACTTATATTCAGCCGTTGGTTTCTGCGTGACGGGATGCTCGTGCACTGAAGACAGCGCCGGAAGatcTTTATTATGTATGGAAACTGCTTTAGGATCAATTCCCGAGAACCTCCCTGGAGATTTTATAAAAATCAGGATTGAGAATTCACACCTCACAGAAATACCCCAAAGGGCTTTTTACACCGTCAGTTCCTTGGAGTCGCTGTGGCTGAACTTTAACACCATCACGCTGATGGACATTAAGAGCCTTGAAGGATTGTATAACCTGACTGAACTCCGACTGGAAGGAAATAAACTGAGAACGATACCGTGGATGGCCTTTCAGGAAACACCCAAACTCAAAATCCTGGATCTGAAGCACAACCGGTTGGACGTGCTGCCGGAATTCGCGTTACGCCACCTTCCCACACTGACCTACTTAGATTTATCCTTCAATCAGCTTACGGTGATATCTCCAGATGTTTTTCTCAACTGGCCTCGATATCAGGTACAAAAGCACAGCAGGATGAAGGAGAGTGAAGCTAACGTGGTATTAGCGTTACACGATAACCTCTGGCTGTGCGACTGCCGACTCAAAGGCTTAGTCGACTTTGTCAAATCCATCAGTCCTCCCATCATTTTGATGAACTCGTACCTGTCCTGTTCAGGTCCAAAATCTAAAGCTGGGAAGTTTTTTCATGAGGTTGAGCTGAGGAATTGTCTGAAGCCGGAAAGTTCTACGCCTGATGCTAACGTCACGGCAGCGCTAGGCTCGAACACGACGCTGAGGTGCTTCGTGAAGGCGAGGCCTGATGCGGTGGTTCGATGGAGCTACAGTCTAAAAGCCATCAGAGGATTCACAGTTTCTCAGTCTCAGGTGAACGAGGATACAATCATCTCGTCTTTAATAATCCCGTCAGTCCGCTTATCCGATCACGGCCTCTACAGATGCAGCGCCAGCAACTTCATCGGGAATTCCTCCGTTAGCATCCAGCTCAACATCTTGTTCTCCAACGCTTCCTTTGCGAAGTCCCCCAGCTTTCCTCTGCCCTCTGTCAACGAAAACATTTACATCGATATACGAATCGCCAAGCAGACCGTGTACGGTATAACCATCGAGTGGTACGCGGCGACGGAGAACCCTTCGGAAACATGGTTCACTGTCCATTTCGGTCGCTACGATTCTCCAAAGAAAGAAGCTCTGTACATCGGCCCGGGCATCAACAAATACTCTGTGAACGATCTCGAACCAGCTACAAAGTACGAGGTGTGCGTCTCGCTGAAGAATCAGTCGCCTCGTCCTGAGCAGTGTATAGTTTTCGTGACAGGGAGCAACACAAACGAACTGGAGCAGCGTGAACGACTCATCCACATCATCGTGATCGTTTGCGCCATGGTGCTAGCGGTTCCTGCCGGAATGTTCGCCTGCACCACCAACACCAGGATCGGCTGCTTGGATCGCTGCACTCAGATCTGCAGCAGAAATCGGGAAAAGAGAGAAGCAAAGGACTCGCAGGAACACGGCAGGCAGGGAACGTTCGACAGTCTCCAGGCGGCCAGCGACGAAGGACTCTACAGAGATTCGGGAAAAGAGCGGAAATGGAGACGACGCTCGGAAGATAAAGTGCAGAAGGGTAACAGCGCACAGCTCTACTAACCAACACGGTGGAGATAACTGTATGAATTTGCACAAACTGATTCGTGTTTAAAGTCACAAGCAGTTCAGTTAAAAAATACTGAAGCACCAGCTGAGAAATCTCctaatgggcgtggcctaatattctaatgagcactCTTAATTAAAGCAAATATTGCGCTTTTTCAGCCTTACATGCACAAACCCACTCTACGCTTGCTAGATTAGCTTTTGTTTGCTAGCTTGCTAAACTGCTGTTTAGGTGGAACTTGCATTATCTGCATTATGATTGGTGAGAAAGCTTGCACATGCGTTATCCCaaattagccccgcccactttctCACTAACAGGCAAGAAAATCTTAGCTTTAAGATGTTTTGCTGTAGCTACGATCTTCCTTAAAGTTCTCTGGAGGAATGTATG

Function

GO: NA

KEGG:

id description
K24491 LRIT; leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239263 lncRNA upstream 34608 24971620 ~ 24973240 (+) True G202215
TU239219 lncRNA upstream 70971 24936284 ~ 24936877 (+) True G202182
XR_004579132.1 lncRNA upstream 113794 24872954 ~ 24894054 (+) True LOC117598464
TU239202 lncRNA upstream 116556 24845833 ~ 24891292 (+) True G202172
TU239334 lncRNA downstream 73624 25086915 ~ 25088713 (+) True G202273
TU239347 lncRNA downstream 96997 25110288 ~ 25111484 (+) True G202286
XR_004579129.1 lncRNA downstream 121160 25134451 ~ 25135165 (+) True LOC113527241
TU239355 lncRNA downstream 173491 25186782 ~ 25189327 (+) False G202290
TU239356 lncRNA downstream 173491 25186782 ~ 25189327 (+) True G202290
XM_026914853.2 mRNA upstream 4578 24998950 ~ 25003270 (+) True lrit1b
XM_026915509.2 mRNA upstream 143167 24861416 ~ 24864681 (+) True LOC113527566
XM_034309056.1 mRNA upstream 322694 24677184 ~ 24685154 (+) True bub3
XM_026915787.2 mRNA upstream 325073 24677184 ~ 24682775 (+) False bub3
XM_026915788.2 mRNA upstream 333272 24669218 ~ 24674576 (+) True LOC113527709
XM_026915692.2 mRNA downstream 50309 25063600 ~ 25079829 (+) True LOC113527669
XM_034309493.1 mRNA downstream 55265 25068556 ~ 25079829 (+) False LOC113527669
XM_034309604.1 mRNA downstream 133378 25146669 ~ 25153897 (+) True LOC117598682
XM_034309567.1 mRNA downstream 141701 25154992 ~ 25162871 (+) True LOC113527238
XM_034309510.1 mRNA downstream 247449 25260740 ~ 25270653 (+) True LOC113527655
TU239119 other upstream 342323 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 625561 24381787 ~ 24382287 (+) True G201962
TU238026 other upstream 1609188 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 1678277 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 1801469 23205666 ~ 23206379 (+) True G201154
TU239415 other downstream 315918 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 484424 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 484889 25498180 ~ 25502628 (+) True G202374

Expression Profile