Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026915517.2 |
| length | 972 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 6 |
| gene id | pts |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 9030252 ~ 9035170 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006729 | tetrahydrobiopterin biosynthetic process | biological_process |
| GO:0003874 | 6-pyruvoyltetrahydropterin synthase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| id | description |
|---|---|
| K01737 | queD, ptpS, PTS; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU228350 | lncRNA | upstream | 112007 | 8918040 ~ 8918245 (+) | True | G192858 |
| XR_004579293.1 | lncRNA | upstream | 428482 | 8596654 ~ 8601770 (+) | True | LOC117598667 |
| TU228231 | lncRNA | upstream | 514318 | 8514382 ~ 8515934 (+) | True | G192760 |
| TU228197 | lncRNA | upstream | 642135 | 8310878 ~ 8388117 (+) | True | G192737 |
| TU228175 | lncRNA | upstream | 760026 | 8269148 ~ 8270226 (+) | True | G192716 |
| TU228722 | lncRNA | downstream | 22229 | 9057399 ~ 9093247 (+) | True | G193170 |
| TU228721 | lncRNA | downstream | 122989 | 9158159 ~ 9158568 (+) | True | G193169 |
| TU228720 | lncRNA | downstream | 124263 | 9159433 ~ 9184089 (+) | True | G193168 |
| TU228956 | lncRNA | downstream | 344103 | 9379273 ~ 9380115 (+) | True | G193386 |
| TU228960 | lncRNA | downstream | 350973 | 9386143 ~ 9386394 (+) | True | G193390 |
| XM_026914777.2 | mRNA | upstream | 4693 | 9013653 ~ 9025559 (+) | True | LOC113527204 |
| XM_026915891.2 | mRNA | upstream | 89421 | 8927805 ~ 8940831 (+) | True | hs3st3l |
| XM_026914717.2 | mRNA | upstream | 123862 | 8899010 ~ 8906390 (+) | True | dhrs7cb |
| XM_026914487.2 | mRNA | upstream | 183571 | 8836049 ~ 8846681 (+) | True | bsk146 |
| XM_034309419.1 | mRNA | upstream | 195796 | 8795009 ~ 8834456 (+) | False | wu:fj29h11 |
| XM_026915083.2 | mRNA | downstream | 5654 | 9040824 ~ 9090546 (+) | True | LOC113527360 |
| XM_026915082.2 | mRNA | downstream | 12197 | 9047367 ~ 9090546 (+) | False | LOC113527360 |
| XM_034309073.1 | mRNA | downstream | 100033 | 9135203 ~ 9139400 (+) | False | adprm |
| XM_026914689.2 | mRNA | downstream | 100050 | 9135220 ~ 9139400 (+) | True | adprm |
| XM_026914687.2 | mRNA | downstream | 107331 | 9142501 ~ 9156288 (+) | True | map2k4b |
| TU227843 | other | upstream | 1402141 | 7605981 ~ 7628111 (+) | True | G192484 |
| TU227741 | other | upstream | 1593880 | 7428579 ~ 7436372 (+) | True | tfam |
| XR_003402840.2 | other | upstream | 2195995 | 6822740 ~ 6834257 (+) | False | asah2 |
| trnap-cgg_7 | other | upstream | 2240307 | 6789874 ~ 6789945 (+) | True | trnap-cgg_7 |
| trnap-ugg_20 | other | upstream | 2241486 | 6788695 ~ 6788766 (+) | True | trnap-ugg_20 |
| trnaa-ugc_7 | other | downstream | 72516 | 9107686 ~ 9107757 (+) | True | trnaa-ugc_7 |
| trnal-aag_6 | other | downstream | 72682 | 9107852 ~ 9107933 (+) | True | trnal-aag_6 |
| trnad-guc_4 | other | downstream | 229604 | 9264774 ~ 9264845 (+) | True | trnad-guc_4 |
| trnad-guc_5 | other | downstream | 231093 | 9266263 ~ 9266334 (+) | True | trnad-guc_5 |
| TU228915 | other | downstream | 233472 | 9268642 ~ 9271331 (+) | False | LOC113527534 |
