RNA id: XM_034309529.1


Basic Information

Item Value
RNA id XM_034309529.1
length 3964
RNA type mRNA
GC content 0.51
exon number 20
gene id rhbdf1b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10754919 ~ 10779575 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATCTCCGAGTTCCTTCTGAGTTGTTTACTTCTAGACGAGAAAAAACTTGTAGCTTGTGGTCGCGTGTTTGCGCTCGCGGACGGCGTGTGTGAGTTGTGACGTAAGTACGTTTGATGTGACTCCGCCCACACCGGTGTTTGTGGAGCGGTTTAGTCAGAGTGAATCACATTCAGCACACAGTCTGTGCAGCTCACCGCCCAACGGAGATGTGGACCCAGGGACACTATAACGCTGCTTTCGTTTTCTGAACGCGTCCATAATATAATTTGGTCTGAAGATAACAGATTTGCGAAGAGTGAAACCCTGCAGGCGTTTATTTGCCAGCACTCTTCCACACCGCGGTGAATGCGCGCACCCGAGAGCTGAAAAGTCAGAGAAAccagctctccccatcatacaGCAACCACcaaccggggagggtgaagtctaacacgtgcttcctccaagacatgtgaactGCTGCGCATGCTGCATGgtagcgtaacacactcggaggaaagcgctatctgctcTCATCTGCGTACACGAACTCACAGACGCTCGTGTGCCCTAGTGTGTGCTAGtgttactgtgattgacaggggcaGAGAGTGTGGCATCTCTACCAACCAGAGaacacagccagttttgctctcttgactcctggccacaaatggctgtggcatcatcagggtTCAAACTCCCAGTGATAGGCTGAACACTCTTCTGCTTGGCCACACAGAAGCCCAGCTGGCAGACGAGGGAGGGAGATGAGCATGGCTGAAGCTGATGAGGAGAGCAGCAGTCAGCAGCGGAAGAAGCCACCATGGCATTATCTGGATATCCCCAGCACACAGGGCCCCACGGAGGAGCTGAACAACTTCATTCAGCCATGGGCACGTAATAGTCTGTACTTGCGCAGTTCCAGCGTGCCCACAGAGAACATTCAGCTCAGATACCCAATGGTGGACCCTTATGCCTCTCGAAGACCCTCGGTACTGCGCAAACCCTCCCTCTCACAGACCATCAAGAGCCCTACAGGGAAGAGGGTGCGCTTTGAGCAGATGAGCACAGTGCTGGTTAATGGCCAATGCTCCTCTCGGCTGGAGGCCACCAGGCGCCAGTCGCTACCCCATATTGTCCTCAGGGGCACGGCAGACTGGTTTGGGGTCAGTAAGGACATCGACACCACTCTGAAATGGCAGAGGAAGAGCCTGCGCCACTGCAACCAGCGCTATGGCAAGCTAAAGCCACAGGTGCTCCGAGAGATGGACCTGCCCAGCCAGGACAACATCTCCATAACAAGCACAGAGACTCCGCCACCTCTTTACGTCCCTCCAGTACACCACGGCATGCAGAAGATTGTGGACCCACTGGCTCGGGGCCGAGCCTTTCGTAACATGGACGATGTGGATGCTTTCAATGGGACTCAAACTCCTATTACCCCTGGAGCTGTGTCCCTGTGCTCTCTCACCAGCTCCCGTTCTGGCCTCAACCGGTTGCCGCGCAGGCGCAAGAGAGAATCTGTAGCCAAAATGGGCTTCAGAGCAGCCGCAGCTCTCGTGAAGGGACGTTCCATGAAAGATGGCACAATGCGTCGAGTACACAGACGCAGCTTTGCTGTAAACAGCTTCATGGAAGATGACACAGGGGAATTCCTAGATGAACTGGACACCTCCTTTTTTACACGGgatggaTTGGTACAGGAGGAACTATCCACATATGCAGACGATGTGTTTGAGTCGCCCTCTGAGGCCGCCATTCGTGAGAATGATGCAAACAAAGTGCCCTGTGAGACAGATTTAACAGGCAGCGCCCTGGGAAAGCCTGAGTTAGAAAGGAGTCACCTAATGCTgcCACTTGAGAGGGGCTGGAGGAAAGGGAGGGATGGCTCTCTGGTCCAACCTAAAGTACGCTTATGCCAGGAAGTTGTGAGTGTGAGTGGCCAGAGACGGGGTCAGCGCATTAATGtgcctgttacaaagctctTTGCCCGTGAGAAACGTCCTTATGGCCTTGGCATAGTGGGAAAGCTGACCAACCGCACGTACCGCAAGCGCATTGACAGCTACgtaaagagacagatagaagaCATGAATAACCACAGGCCTTTCTTCACATATTGGATAACATTTGTCCACTTGCTCATCACCATCTTGTCAGTATCCATCTATGGCATTGCACCTATTGGCTTCTCCCAACATGAAACTGTAGATTCTGTTTTAAGAAATAAAGGCATTTATGAGAATGTCAAGTATGTGCAGCAAGAGAACTTCTGGGTTGGACCAAACTCGGTGGCGCTGATACATTTGGGAGCCAAATTCTCACCGTGCATGCGCCAAGACCAGCAGGTGCATGACCTGATCcaggagaagagggagaaggagcGCCACTCAGCCTGCTGCGTCCGAAATGACCAATCAGGCTGCGTGCAGACCTCTCAGGAAGAGTGTTCAAGTACATTGGCTGTCTGGGTAAAGTGGCCTCAGCACCCAAGTGTTCCATATCTAGACGGCAAATTACGCAAGTACGGCTCAGTTTGTCATCAAGACCCAAGGACTTGTCTGGAGCCAGCCTCTGTCTCGCCTCATGAGTGGCCTGATGACATCACCAAGTGGCCAATATGCACCAGGTACAGCAGTGGAAACCACACAAACCTGCCACACGTAGACTGTGTGATCACAGGCCGGCCATGCTGCATTGGAACCAAAGGAAGgtGTGAAATCACATCCAGAGAGTACTGTGACTTTATGAAGGGCTATTTTCATGAAGAGGCCACGCTTTGTTCCCAGGTGCACTGCATGGATGATGTGTGTGGCCTGCTGCCTTTTCTCAACCCAGAGGTACCAGATCAGTTTTATCGCCTATGGCTGTCTCTCTTCTTGCATGCTGGGATTCTGCACTGTCTGGTgtctgtgtgcttccaaatgaCCATCCTGAGGGATCTGGAAAAACTAGCGGGGTGGCTTCGAATATCCATCATCTACATCCTCAGTGGCATTACAGGCAACTTGGCCAGTTCCATATTTCTTCCTTACAGAGCTGAGGTCGGGCCAGCCGGCTCTCAGTTCGGCATCCTCGCCTGTCTGTTTGTAGAGCTGTTCCAGAGCTGGCAGATCCTGGCGCGGCCATGGCGGGCCTTCATGAAGCTGCTGTGTGTGGTTCTCTTCCTTTTTGCTGTTGGCCTGCTGCCATGGATCGACAATTTCGCCCACATTTGCGGCTTCATCTCAggcttcttcctctccttcGCATTCCTGCCTTACATCAGCTTTGGGCGAATGGACATGTACCGCAAGCGCTGCCAGATATTggtctcactcacactctttCTGGGAATCTTCTCCAGCTTTGTGGTGCTCTTCTACGTGTATCCAGTCAAGTGTGAATGGTGCGAGCTGCTTACCTGCATCCCTCTGACAGACAAGTTCTGTGAGAAGTATGACCTCAACGCTCACCTCCACTGACGCCttaaagagaggagaggaaatcCAGAGGGGAAGAAAGTGGAGAGCTGTGAAATGGTTTCCAATCCTCTTGCTCAAACTGACATTATTTGGTCTGTTAGAGTCTGTATCAATCTGTATTTGTTACTGCACTCAATGAAGGTATTCAGTTCATAGGCTCGAAGAAAAGTCCTCCCTGGGGAGGAGAGATGATCTAAATGCCTCTAGTGCCTTGTTGATCAATACCAACTGCTGCCATATCTGCGTTCCATTAACTCTGAGCACTGTTGTTCATACCCTGTAATATGTACACTGCTACTTAAGTAGTGCATGTTTGGTAGTGTTTTAACTACCTGCTCCCTTGTAATACACAGTACAATAAGAGTACACTTAATTCTCTGtgtgtcatatttttttctgtttagaaagaagaaaaacaggtGGACATCTTGATCAGAATATGTTCAGAATTCCTGAACTCttcattcatttcactgtgCAGTCACCTAATGCAATTATCCATTACACTGTCCATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229892 lncRNA upstream 42904 10711321 ~ 10712015 (+) True G194113
TU229865 lncRNA upstream 92456 10594229 ~ 10662463 (+) True G194091
TU229857 lncRNA upstream 93969 10659878 ~ 10660950 (+) True G194087
TU229853 lncRNA upstream 108466 10644938 ~ 10646453 (+) False msrb1b
TU229700 lncRNA upstream 404299 10350199 ~ 10350620 (+) True G193972
TU230004 lncRNA downstream 1088 10780663 ~ 10780884 (+) True G194201
XR_003402886.1 lncRNA downstream 9192 10788767 ~ 10790017 (+) True LOC113527761
TU230092 lncRNA downstream 185375 10964950 ~ 10965617 (+) True G194276
TU230097 lncRNA downstream 186063 10965638 ~ 10968033 (+) True G194278
TU230188 lncRNA downstream 282589 11062164 ~ 11063682 (+) True G194365
XM_026914752.2 mRNA upstream 26368 10726693 ~ 10728551 (+) True aqp8a.2
XM_026914645.2 mRNA upstream 30260 10722440 ~ 10724659 (+) True aqp8a.1
XM_026914588.2 mRNA upstream 34237 10713814 ~ 10720682 (+) False lcmt1
XM_026914589.2 mRNA upstream 34237 10713828 ~ 10720682 (+) True lcmt1
XM_026915348.2 mRNA upstream 61420 10690548 ~ 10693499 (+) True LOC113527483
XM_026914993.2 mRNA downstream 32570 10812145 ~ 10821178 (+) True ubald1a
XM_026915487.2 mRNA downstream 132543 10912118 ~ 10937879 (+) True shisa9a
XM_034309550.1 mRNA downstream 132543 10912118 ~ 10937879 (+) False shisa9a
XM_026915656.2 mRNA downstream 317390 11096965 ~ 11100503 (+) False maff
XM_026915654.2 mRNA downstream 317458 11097033 ~ 11100503 (+) True maff
trnal-aag_8 other upstream 690293 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1119852 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1241084 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1242288 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 1242679 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 506622 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 1693108 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2703726 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2703726 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 6076195 16855770 ~ 16863495 (+) False anapc16

Expression Profile