RNA id: XM_034309466.1


Basic Information

Item Value
RNA id XM_034309466.1
length 3245
RNA type mRNA
GC content 0.49
exon number 16
gene id ebf3a
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 18827636 ~ 18920766 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCTGCtcgtagtgtgtgtatgtgtactcaCGCGGTACTTGGGCAACGCCAGCGACCGGAAATGTCAGACCCCTTCTCCTCCATATATGGTCAAAACCCCGCCCACAGCGCGTCATCGCTCTGACAGTGCGGATCCCGCGGGTCTAGAGTTTTGGCTCCCGGGAAAGGCTTCAGTCCTAGGGGATAGAGGGCTGAGTTTTGTACGCTTCCATCCATTCCGAGAGACGCTAAAGGCCCCCCTCATCAAGCTCTCTCCCGCGTCCGGGAACACCTCCGCGCTAAATCATAGTTTTTTTCCCGTTTATTTGTCTTTTGGAGCTGGAGCGCCTTGCCAGAAAGTGGTCGATTCAGCAGTGtcctgaagcttttttttttcctgtaggGATGATGACACGAGCCTGAGAGCATCATCACAGCGCAAAGTTACAAGAGATgttgaactgatttttttttaaagaaagaaaagaaaaaaaaacaacatccagGTATTTCGACGACTCCTCCAACGGGATCTCGATCCAAACGAGCCGCTGAGAGATCTTGACAGAGAATCCTCCACTCACTGAAATCGTCCATGTCGTGCCAACGCAGGACGCGCTGAAGAAGGAGCCGAGACTTGTTCTGAACTGggcttgtttctttttttttttttttttccttcaacaaATCACGACCAAACTCTCGCAGAGATCCGAGTGCGTCTCGTGGAGAAACGACGCGTCCTTTCCCGATTTTTCGCTTTGACCTCGTCGGCTGGAGCTGGTTTACACGCACGCCGCTTTAATGTTTGGGATTCAGGAGAATATACCGAGAGGGGGGACGACTATGAAAGAGGAGCCGCTGGGCAGCGGCATGAACCCCGTCCGATCATGGATGCACACGGCCGGGGTGGTGGATGCTAACACAGCCGCCCAAAGCGGAGTGGGTCTGGCGCGGGCGCATTACGAGAAACAGCCGCCGTCCAATCTGAGGAAGTCCAATTTTTTCCACTTCGTCTTGGCTCTGTACGACAGACAGGGTCAGCCCGTCGAGATCGAAAGGACAGCTTTTGTGGACTTTGTGGAGAAGGAGAAAGAACCAAACAGCGAAAAAACTAACAATGGGATACATTACAAACTACAGCTTTTATACAGCAACGGCGTCAGAACAGAACAGGATCTTTATGTACGGTTAATCGATTCCATGACAAAACAGgCTATTATTTATGAAGGCCAAGATAAAAATCCAGAAATGTGCCGAGTTCTCCTCACACACGAAATTATGTGCAGCCGGTGTTGTGACAAGAAAAGTTGCGGGAACAGAAACGAAACCCCTTCAGACCCTGTGATCATCGACAGattctTTTTGAAATTCTTCCTCAAGTGCAATCAGAACTGCCTGAAGAATGCAGGCAACCCACGAGACATGCGCAGGTTCCAGGTCGTTATATCGACGACGGTTAACGTGGACGGTCATGTGTTGGCCGTTTCGGACAACATGTTCGTCCACAACAATTCCAAACATGGCCGACGGGCTCGTCGCCTTGACCCCTCTGAAGGTACGGCCCCTCCTTATCTGGAGAATGCTACCCCGTGCATAAAGGCCATTAGCCCCAGTGAAGGCTGGACCACCGGCGGAGCCACGGTCATCCTCATCGGCGACAACTTCTTCGACGGCCTGCAGGTCGTGTTCGGCACCATGCTCGTATGGAGTGAGTTGATAACGCCCCATGCTATCCGAGTGCAGACTCCCCCCAGACACATCCCCGGGGTCGTGGAGGTCACCCTGTCCTACAAGTCCAAGCAGTTCTGCAAAGGAGCGCCAGGACGATTCGTCTACACTGCTTTGAACGAGCCAACTATTGACTACGGCTTCCAGAGACTGCAGAAGGTCATCCCCAGACATCCAGGTGACCCGGAGAGGTTGCCAAAGGAGGTTCTACTAAAGAGAGCAGCTGACCTTGTGGAGGCTCTGTATGGCATGCCCCACAACAACCAGGAGATCATTCTGAAGCGGGCAGCAGACATCGCTGAGGCTCTCTACAGTGTACCACGCAACCACAACCAGATCCCGTCTCTCGCTAACACTGCGTCCCACGGTGGCATGATGGGCGTCAACTCTTTCGGTAGCCAGCTGGCGGTCAACGTCTCCGAGACCTCACAGGTTGGCTACAGCCGTAACACGAGCAGCGTGTCGCCTCGCGGCTACGTGCCCAGCAGCACTCCACAGCAGTCCAACTACAACACAGTCAGCAACAGCATGAACGGCTACGGAAACGCTGGCATGCCCAACCTGGGTGTCCCGAGCTCGCCTGGATTCCTCAACGGCTCATCCGCCAACTCGCCCTACGGCATGAAACAAAAGAGCGCCTTTGCCCCCGTTGTCAGGCCCCAAGCATCTCCACCTCCTTCTTGCACCAGTGCAAATGGCAATGGACTTCAAGCTATGTCCGGACTGGTGGTCCCTCCCATGTAAATTGCACTTCCACCTCTTGTAAAGCAGCAGTGTCTGTGCAGTGAGCCTCGGGGTACGTCACAGAACGTTCTCCTCAAATGACCGGCATCCGTCATGAAGTTATTCAACAACTATGTCTAATTccgaggaaggaaaaaaaaaagactttgttttaaagattttattcagACTAATGTAAATTGACATGCAAGAAACTTTGtcatgaacattttaaatttattgacTGAATTTCTTGTCATATTTTCAcgtttctctgtcttgaagaaaaaaaaaatcacggaAGGAAAAATGCCTATTTTGTATAAATCTTTCTGGTTCGATCTTGGCTAGATCTTGTTATGTGTGGGGAGCAACTTTGTGGATATGCCATTTGatgaaaacacactgaaatgtcTCTGAATGTTTCTTTTCGAGTGATGCGCAGCCGTCGCACATCTCTATAAtgtgaagtcattttttttttcattacttttgctttttctttttctttcttttgatttgTGGTGAGAAAAATAGGGGCCAAGCCAATACTGCAGAGCCAACAAACTGGAAATAACATAACCTAAAACATatgatttataaaatgtaaagattAAAGTGAATAAGAGTGAAAGGGGAGGAACAGGCAGAGGAGATGTTATCATGCATACTTCATCGAAAATGAACTTTGTAACTTATTGTAGGTAGAAATTGTAACTTTGATATCGCAAAAATTCTCTTGCCTTCAACAAGCACACTAACAGAGACGAAATGCTACTGtctgttggttaaaaaaaaaaagaaaaaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235481 lncRNA upstream 3076 18823633 ~ 18824561 (+) True G198901
TU235464 lncRNA upstream 58947 18768393 ~ 18768690 (+) True G198886
TU235453 lncRNA upstream 123938 18703475 ~ 18703699 (+) True G198876
TU235395 lncRNA upstream 129134 18680173 ~ 18698503 (+) True G198818
TU235326 lncRNA upstream 296341 18525668 ~ 18531296 (+) True G198767
XR_003402870.2 lncRNA downstream 388717 19309483 ~ 19314815 (+) True LOC113527366
TU235663 lncRNA downstream 505614 19426380 ~ 19426595 (+) True G199051
TU235786 lncRNA downstream 871868 19792634 ~ 19856480 (+) True G199161
TU235814 lncRNA downstream 955975 19876741 ~ 19885988 (+) True G199187
TU235845 lncRNA downstream 1023478 19944244 ~ 19944466 (+) True G199216
XM_034309113.1 mRNA upstream 15375 18806077 ~ 18812262 (+) False si:ch211-221j21.3
XM_034309112.1 mRNA upstream 15375 18806090 ~ 18812262 (+) False si:ch211-221j21.3
XM_026915613.2 mRNA upstream 124880 18614191 ~ 18702757 (+) True LOC113527622
XM_026915614.2 mRNA upstream 124880 18614191 ~ 18702757 (+) False LOC113527622
XM_026915376.2 mRNA upstream 319779 18498245 ~ 18507858 (+) True bnip3
XM_026914625.2 mRNA downstream 449560 19370326 ~ 19373349 (+) True LOC113527107
XM_026915793.2 mRNA downstream 605876 19526642 ~ 19564198 (+) True LOC113527713
XM_026915899.2 mRNA downstream 773632 19694398 ~ 19719754 (+) True c12h10orf90
XM_026915900.2 mRNA downstream 773632 19694398 ~ 19719754 (+) False c12h10orf90
XM_026915906.2 mRNA downstream 806905 19727671 ~ 19825878 (+) True LOC113527774
XR_004579138.1 other upstream 15375 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 16125 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 317478 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 669008 18155151 ~ 18158629 (+) False pde6gb
trnai-uau_6 other upstream 1250261 17577283 ~ 17577376 (+) True trnai-uau_6
XR_004579324.1 other downstream 605876 19526642 ~ 19566684 (+) False LOC113527713
TU237322 other downstream 3082058 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 3087745 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 3877415 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 4284900 23205666 ~ 23206379 (+) True G201154

Expression Profile