RNA id: XM_026915586.2


Basic Information

Item Value
RNA id XM_026915586.2
length 4470
RNA type mRNA
GC content 0.41
exon number 11
gene id fam20a
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4837911 ~ 4849678 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGGAAGGTGCAGCTGGAGCTTTGCCAAGAAGCAAGAGTAGCATGCTGCTTCCGTGCTCCAGTCAGAAGAGAGCAGAAGGGCATGGTCTCAGTCAGCCACTAAacagagggacacacacacaaacacacacacacgtgttggCTCTATCTCCGTCGTCCTGAGCCCAAAACCACAGAGGGAACAATTCTGTGTATGTACGCTGGAGGGGCCGCATTAAAGGACAAAGCAACAGATGTATCTGAAAGACTGGAAGAATTAGAAGTCCTATAAATCCATATAACCCAGCATGCTGGAGAACTGCAAGACCTTCTCAACAAGTGTGACCATCTCAATTAAGTGAGCCTGTTCTGAGCTCTTTTTCCCCCACTAATGGCAAGAATGAAGAGGGACCGGTTCCTGTTGGCtgtcaccttcatcatcattctTACAGTTGATGTCTACTTTGTTCTGCTTCCCAGGCTGAGAGCCTGGTATGACTTATCCAGGGGTGGCTGTAACTGCAATGGGGTTAATGGCAGTGTTGGCTATACTGAACAGGTTCCTCACAAAAAAACCTTGAGTTCTAACCTTGTCTCTCAAAAAGAATCCAAGCTGAAGAGGCTTTTTGGCCATCCACTGTACAATATTCATCTTCCAGAACTAACTTCAGTTGAGAGATTGCTGGAAGAAGAGGAGCTCATGGAATATTACAGGAGGAAATTGACCCGCTGGGAGAGACAGCAGAAGTTCTACATTGAGGCCGCAGCAGCATCGAACATCTCATTGCCTGAGCAACCTGTAAACTTTGATCCTGATGCTAGCTGGCTGAAATTCCATTTGGGAATCAACCGATATGCACTGTACTCCAGAGATGACCAAAGCATTGATGAGCTACTGCAAGATATGCAGAGTGCCACTATCATTGGAGCAGATTACACTCAAGATGAAAAAGCCTTAAAGGGAGCATGTGACTGCTCACAAGTGGTTAAGCCAAGTGGCCATCACCTGAAACTTGCACTGAAGTTGCAAGACTTTGGGAAAGCTATGTTCAAACCTATGAGACAGGAACGACATGAAGAGACACCTGAAgacttcttttattttgttgacTTCCAGAGACACAATGCAGAAATTGCCTCCTTCCACCTGGACAGAGTCCTTGATTTCCGGAGAGTTCCGCCTGTGGTTGGGAGACTCATTAATGTCACTGGCGAGGTATTGTACACCACATACAACGAGGAGCTCCGTAGTGTCTTCTTCACCTCGCCAGCTAACAACACATGCTTCTTTGCCAAGTGTCTGTACGTGTGTAAGACGGAATATGCGGTGTGTGGACATCCAGACCTTCTGGAAGGATCCATGTCGGCCTATCTGCCTGGACTGAGTGTAGCACCCCGCATTTCCATCCCCAGCCCCTGGATCCGCTCTTATACCTTTACTGGAAAAGAGGAatGGGAAGTAAATCCATCATACTGTGACACCATCAAAAGACTATACCCCTACAGCTCTGGAAATAGACTACTGAATATCATTGACATGGCCATATTTGACTTCCTTACAGgaaATATGGACCGGCACCACTATGAAATTTTTACCAAGTTTGGTGACGAAGGTTTTCTGCTTCACCTTGACAATGCAAGAGGGTTTGGAAGGCACTCCTATGACGAAATGTCAATTCTGGCACCACTGACGCAGTGCTGCATGATCAAGCGCTCTACGTTGCTGAGGCTGCAGCTGTTGTTGCAACCAGACTATCTACTCAGTGATGTGATGAGAGAGTCTTTGTCTCGAGATCCACTCAGACCCATTTTGACTGAGCCCCATCTGCAGGCTCTGGATCGGAGACTGGAGCGTGTGGTCAGGTCTGTGAGTAGATGTGTGAAGAAGTTTGGGGAAGCCAAGGTGGTGGTCACCGACTTCATGGAGACCTCCGGTGCAGCTACagagagaaaccacaaaaaaagcAGGTGACAGATGCCgacaagagaaaaaaacaaaggaaaaatgtaaagaaagtgGTCATAGACTTTGTGGAGGCCTCCAGTAGTTGTAAACAGGGAATCCAGGGCAAATGGATGCAGACGTGTGATAAAGAACAGAGCGTTCAAGCCAAGGATTGATAGAAAAACACTGGAACACGGACTCATGGATGTACCTCATGATTCTGGCCTGGAATAGAAGGACCTTTTCTATTTCATTTCCTAACAATTGCctatggattaaaaaatgtgtaagtgAACAAGCACTATTTGTAGATGTGCACATATTGTACCAAATTGTTGCACGATGGATACTTCACTGTGGGGGAAGTTGTTTTCAGAATCGTAAAACTGACAGACGACGTCATGTTCCTGAGAAGCGGCTGTGGGATTTGCGGTGTACTTTTCAGGCAAACACATGTTTGTGTGGAACTTTCAAACATTCCCCTGATTATCTGcttttttctgcaacattttaaacaaatactcATTAGGGAGATAGGGACAGACAGGGCAGAGAGCAGTGAAGAGGTTGATTTCTTCAGAGAAAAGTATATGCcattaaaatgtctaaaacattTGGATTTGTGGCTTTCGGTCCAGACGGCGAGCAAGCATATAATCCTTGGCTGTCTCTTCGTTTCACAGTTTGTAGGCTTTCAAGTGGAATCTCAAACCTGccagaaaaaaatcatctgaACTATTTACAGGCAACTCTTCCTTTGCCAAAACTTTGTTCCAACTTGTGGTATGCAGTTTATTGCAACACAAATGTCAAAGGTAGAAGGTAGAAAGTAGTTTTTGGAACAAGCTGCAGCATGTCTGTCATTAGAGCTGGTCTGCTTGTTTCTAGTGACAACTAAAAATGCCTCTTTTTTCAAATCTGTAAAacggattttaaaaaagcaagcaAATGTTTGAGACATGAAACGATTAGTGAAAATTAAGCGAAAAAAGTTGAATCAGTTCTTAATCTCTAGTTTTAATGAAGTCCCAGTTGAAATTACTGAGCATTCTACCCATTATATTTCCTGCTTAAGAAAAACTATACTGCTTCATTGTAAGATACAGAAAATGTGGTTAGCCAAGATTTTCTTGTGCTTTTGGAATGCTTACATGGAATTTCTACTTATTAGCAAGCTTTCCTTTATTCCACAAAACAGTTCAGGGCAAGCCAGTGCAGTTTCAGTGGGGGCCAGGTTTATCCAAGTTTACTTTCCACTTTAAAACTTAGCCAGTTTCAGCACTATAAACCAGTGTCAATCATGGATACGAAACAAGCCACTATTTTTCCAGATTTAACAAACATTAAGCTAATAACTgaaccaaaaccaaaaactgCCCCCTTGTGGTTGGCATACATTATGACTTCATTTTAATGATACATCCATTTGCCCTACACAGGATTAAACACTTCATGATTAAGCATTCAGtagaaaaaatgaatacaaacatCTCGGCAACTTTTTATTGCTTAAACTGCCATTACGACAAGCTATAccaaaaaatcattttgttgATGACACACTGGAAATCAACGCAAAActgaaatcaaatttaaaaaagaaaaagaacatatGGTCCACTGTTTATGGTACCTGCAGTTCTAATGACTGCAAGTGTCAAGAAACCAGCTCAAGGTTTGGGCTAGCAAGAGTATAGAGTCTTTAGTAACAAAAGCCAAGCAAAGCTAgattaatatatgtttttatacatAGAAAGATAGATGATCATATAGACTGTGAGTGAGAAACTCTGGGTACCTTAGGGCATAAAAtactatttaataaatatataatgtgaagGAATAAAGTGTAACAATGATGAGAGAGGGCACTGGGCATTCTCTATGGCTTATACACTTTAAAAACAGGTATCCTGTAAATAAAAGGGCaagtcaaatgaaaacattaacttctttaaatttatttattttttttggttattgcaaataggtgttttttcatttttctatatAACCTACATTTAGTTCAATACAAGTGTTCCAGTGTGTAATGAGTGCCTGGATTCTTTTAGAAACAAATTTGCTTTAATTCTAATTTGTCGCaattttaaggttttcatttgactcaccatCATATATTTTTACAGCCTTTATGCATTGAAATTGTGCTATTTATTCTACATTacaaacacaaaaccacaaaaacatattttgcaCAAAACAATGTGTTGTTGCATGAAGTTCAGAAAAAGCACGcatacattaattaatatggCACAAAGCTCCTAAAGTAAACTTATTGAAATTAAAAACGACAGTATGGAACAACTTACTGAAACTGGCATTGCTAATACTGGAGATTTACAGTCTGTTAAATCTTGCTATTTTGCTTAATTGCTAATGTGATAACTGGAAATATTCTTGGCTGGTATTAGGACTGTAATAATTTGAATAAGACTTCTTGTTGTGACTTGCATTTTGGCACTGGCTTTGAACCCCGGTGAAACTATGACTTCCATTCAAATAAAGCCTTGGTGCAAGTGAAA

Function

GO: NA

KEGG:

id description
K21957 FAM20A; pseudokinase FAM20A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225963 lncRNA downstream 87034 4701104 ~ 4750877 (-) True G190885
TU225914 lncRNA downstream 171340 4666312 ~ 4666571 (-) True G190849
TU225890 lncRNA downstream 241088 4596539 ~ 4596823 (-) True G190829
TU225878 lncRNA downstream 262381 4573682 ~ 4575530 (-) True G190821
TU225794 lncRNA downstream 549108 4288417 ~ 4288803 (-) True G190742
TU226166 lncRNA upstream 62056 4911734 ~ 4918977 (-) True trnap-cgg_3
TU226433 lncRNA upstream 533317 5382995 ~ 5387137 (-) True G191279
TU226592 lncRNA upstream 593284 5442962 ~ 5445167 (-) True G191413
TU226604 lncRNA upstream 632942 5482620 ~ 5484667 (-) True G191424
TU226605 lncRNA upstream 639139 5488817 ~ 5489111 (-) False gdpd3b
XM_034309628.1 mRNA downstream 10559 4810652 ~ 4827352 (-) False zdhhc16b
XM_026915838.2 mRNA downstream 17326 4810652 ~ 4820585 (-) False zdhhc16b
XM_026915839.2 mRNA downstream 20220 4810652 ~ 4817691 (-) True zdhhc16b
XM_026915203.2 mRNA downstream 50335 4770544 ~ 4787576 (-) False ubtd1b
XM_026915202.2 mRNA downstream 50335 4770544 ~ 4787576 (-) False ubtd1b
XM_034309046.1 mRNA upstream 142264 4991942 ~ 4998332 (-) True pagr1
XM_026914518.2 mRNA upstream 209820 5059498 ~ 5063418 (-) True LOC113527048
XM_026914728.2 mRNA upstream 406586 5256264 ~ 5265357 (-) True g6pc3
XM_026914669.2 mRNA upstream 440034 5289712 ~ 5294398 (-) True tmem101
XM_034309110.1 mRNA upstream 462566 5312244 ~ 5322475 (-) True LOC113527073
TU224811 other downstream 1982418 2852055 ~ 2855493 (-) True ndufa4
TU224780 other downstream 2023331 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other downstream 2032005 2800076 ~ 2805906 (-) False LOC113547504
XR_003404831.2 other downstream 2626932 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 3266838 1568286 ~ 1571073 (-) True G189199
trnap-cgg_2 other upstream 49096 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 50288 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 51458 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 52650 4902328 ~ 4902399 (-) True trnap-ugg_4
trnap-ugg_5 other upstream 53943 4903621 ~ 4903691 (-) True trnap-ugg_5

Expression Profile