RNA id: XM_026915599.2


Basic Information

Item Value
RNA id XM_026915599.2
length 2127
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC113527613
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8198084 ~ 8201220 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGAGCCCGAGTAATGAGTGTAAACTCCGGAATATCGGGAACAAAAGCAACCCGTGGACGCTTTCCTTTGTGCTGAGGAATTAACACCTTTTCAAAGTTAAATCCTCGGATTGTCCCGCTTCTACGGGAGGTGGTATTAAAATGCGCCTTCATAACAAATGGCTGCGAGTTGTCGGAGCGGCTTTTCTGGGTTCGTGGGCGGGGCGAGATGACACCACAATTAAAGATGAACTTTGTGTGAACTAATTTATCTGACCCAAGGTAACGAGGAGGCCGAGACAGGAGGGAATGTGTATAAAAGGCTGCATGTAACCCAGAGAGAGTCAGACACGAGAGAAGACCTGTGCATGCGCTGCTGTTCCTcggttgttttttaaaaaggtgcGCGTCATGGGTCTGTACACTTTGTTGGTAACGTTGCTGTGTACGGTCGTGCTTCCCGTGCTGCTGCTGTTAGCCGCGGTGAAGCTGTGGCAGGTTTTGGTGATCCGAGGACTCGACCCGAGCTGCACGAGCCCCCTTCCCCCGGGCACCATGGGTCTGCCTTTCATTGGAGAGACGCTGCAGCTCATCCTCCAGAGGAGAAAGTTTCTGCGCATGAAGCGTCAAAAGTATGGCTTCATCTACAAAACGCACCTCTTCGGGAACCCCACGGTGCGCGTCATGGGCGCTGAGAACGTGCGCCAGATCCTGCTCGGGGAGCACAAGCTGGTCGCTGTGCAGTGGCCCGCCTCTGTCAGAACCATCCTCGGCTCAGACACGCTCTCCAACGTGCACGGGTCTCTGCACCGAAACAAGAAAAAGgcgATCCTGAAGGCTTTCTCTCGGGATGCTCTGGAGCACTACATCCCGCTGATCCAGGAGGAGGTGCGGTGCGCAGTCAGTGACTGGATGGAGCGTGATGCACCTGTGCTCGTGTACCCAGAGATGAAGCGCCTCATGTTCCGCATCGCCATGAGAATCCTTCTGGGCTTTGAACCCGAGCAGATCAAGAGGGACGAGCAAGAGCTTGTGGAGGCTTTTGAGGAAATGATCAAGAACCTCTTCTCTCTCCCAATTGACGTCCCATTCAGCGGCTTATATCGGGGCCTCAAAGCACGAAATTTTATTCATGCAAAAATTGAGGAGAACATCAGGaagaaaatccaagatggtgaCAATGAGAATGAGCCCAAGTACAAGGATGCTCTTCAGCAGTTGATTGAAAATAGCAGGAGAAGTGATGAGCCACTCAGCATGCAGGCGATGAAGGAGGCAGCAACTGAACTTCTCTTTGGCGGTCACGAGACTACCGCCAGTACAGCAACTTCTCTGGTGATGTTCTTGGGACTGAATCCAGAGGTGATTCAGCGAATCCGAGAGGAGCTCGAAGAGAAGgAGGTTTCAAGCATGTATTTGCCTGAAAGAGCTCTTAATATGGAGCTGCTGGAACATCTCAAGTACACTGGCTGTGTCATAAAGGAAACCCTCCGAATTAATCCACCTGTGCCTGGGGGATTCCGTGTTGCACTTAAAACCTTCGAACTCAATGGCTACCAGATTCCCAAAGGCTGGAATGTCATTTACAGCATATGTGATACCCATGATGTTGCAGATATCTTCCCACACAAAGAGGAATTCCAGCCAGAGAGATTCATGGCTAAAGGCTTGGAAGACAGTTCCAGGTTTAACTACATCCCCTTTGGAGGAGGAGCCAGGATGTGTGTGGGAAAGGAGTTTGCCAAAATGCTACTCAAGATATTTTTAGTCGAGTTAACACAGCACTGCAACTGGACACTTTTGAACGGACCCCCGACAATGAAAACGGGTCCAACTGTGTATCCTGTGGACAATCTTCCCACAAAGTTCTGCCGTTACGTCAGTAATTAGCGCATTAAATCAGGCATGAACTGTTGGCATGGGAATTGTACagatatacatgtatatattttaattttgttgatgaaatgtaatgtatgATACTTTATATCAAATCTGTATATAATTCCATTCTTTAACTAAGGGCACTACTCTTTTTATGAATCACTGTATTTCTTTGAGGTATATGATGTATATTTGTaatgtagttttatatatatagatatatatatatacatatagtgtGTTCTACTGAATGCaacttaattt

Function

GO:

id name namespace
GO:0021797 forebrain anterior/posterior pattern specification biological_process
GO:0071299 cellular response to vitamin A biological_process
GO:0001756 somitogenesis biological_process
GO:0003131 mesodermal-endodermal cell signaling biological_process
GO:0031016 pancreas development biological_process
GO:0048854 brain morphogenesis biological_process
GO:0021661 rhombomere 4 morphogenesis biological_process
GO:0001568 blood vessel development biological_process
GO:0042574 retinal metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0034653 retinoic acid catabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0008401 retinoic acid 4-hydroxylase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07437 CYP26A; cytochrome P450 family 26 subfamily A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228139 lncRNA downstream 71527 8071922 ~ 8126557 (-) True G192685
TU228135 lncRNA downstream 102727 8090685 ~ 8095357 (-) True G192681
TU228096 lncRNA downstream 220930 7974214 ~ 7977154 (-) True G192665
TU228097 lncRNA downstream 221019 7974214 ~ 7977065 (-) False G192665
TU228034 lncRNA downstream 320385 7874766 ~ 7877699 (-) True G192611
TU228380 lncRNA upstream 178007 8379227 ~ 8383599 (-) True G192881
TU228447 lncRNA upstream 228084 8429304 ~ 8436084 (-) True G192937
TU228459 lncRNA upstream 250977 8452197 ~ 8455303 (-) True G192948
TU228456 lncRNA upstream 263089 8464309 ~ 8541281 (-) True G192945
TU228465 lncRNA upstream 279200 8480420 ~ 8513470 (-) True G192953
XM_026915091.2 mRNA downstream 57024 8021534 ~ 8141060 (-) False jmjd1cb
XM_026915090.2 mRNA downstream 57024 8021534 ~ 8141060 (-) False jmjd1cb
XM_026915092.2 mRNA downstream 57026 8021534 ~ 8141058 (-) False jmjd1cb
XM_026915089.2 mRNA downstream 57026 8021534 ~ 8141058 (-) False jmjd1cb
XM_026915088.2 mRNA downstream 57026 8021534 ~ 8141058 (-) True jmjd1cb
XM_026915591.2 mRNA upstream 6724 8207944 ~ 8261110 (-) False exoc6
XM_026915590.2 mRNA upstream 6724 8207944 ~ 8261110 (-) False exoc6
XM_026915597.2 mRNA upstream 6724 8207944 ~ 8259602 (-) False exoc6
XM_026915592.2 mRNA upstream 6724 8207944 ~ 8259602 (-) True exoc6
XM_026915594.2 mRNA upstream 8125 8209345 ~ 8261110 (-) False exoc6
XR_004579320.1 other downstream 1603694 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 2422064 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 2584130 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 2724614 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 2895879 5302113 ~ 5302205 (-) True trnai-uau_5
trnap-agg_9 other upstream 257107 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 274039 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 646442 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 875569 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 875898 9077118 ~ 9077199 (-) True trnal-uag_4

Expression Profile