RNA id: XM_026915604.2


Basic Information

Item Value
RNA id XM_026915604.2
length 1440
RNA type mRNA
GC content 0.43
exon number 6
gene id gch2
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17468136 ~ 17473825 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAACAGGTGCCTCCTAACGCATGACGCACAGAACCCCTGCAAGCAAAGCAGGAAGCTTCAGCATCTACTTCACTTAACCAGAGTTCAGTGCAGCTCAGAATACGAAACTGTGCGCGATGGAGTACCACAACGGCGTGGAGGTGAACGGCGTGACAGAGCTGCTGTACCATAACGGCTGTAACAGCGACAGCTCCGTGCAGCAGATGAAAAAGGGAGAAGCGGCGCGCGTAAAAGCGGAGGAGCGGCGCGCAGCGGCCATGCAGTCAGCCTACTCCAACATCCTGCGCGCTCTCGGAGAGGACACCGAGCGTGAAGGACTGCTCAAAACTCCTCTCCGAGCAACCAAGTCCATGCAGTTCCTCACCAAGGGCTACCACCAAACCATCTACGATGTCCTTAATAATGCCATTTTCGAAGAAGATCATGACGAGATGGTTATAGTGAAAGACATTGACATGTTCTCGCTTTGTGAACATCACCTAGTACCATTCTTTGGCAAGGTCCACATAGGATATTTGCCAAGTAAGAAAGTGGTTGGCCTTAGTAAACTTGCCAGGATTGTAGAAATCTACAGCCGCAGACTGCAAGTACAAGAGCGTCTGACCAAGCAAATTGCCATGGCCATCTCTGAAGCTCTGCAGCCAGCAGGAGTAGCAGTAGTCATTGAAGCAGCTCACATGTGCATGGTCATGCGTGGAGTGCAGAAGATGAACAGCCGTACCGTGACCAGTACCATGCTGGGAGTATTCAGAGAGGATCCGAAGACTCGTGACGAGTTTCTGGCCCTGACCAAGAGCCTTCATTAAAGTCTCCTCTcaacatcaaacaccagcaaaGCGGTTTCACATCTAACTGAGCTATAACATTCACTTCTTTTGGCACCCACACAAATGTGCTTGCGGTAAAGGCAACACATTACAGTTTGCTGAATAATCAATACATTTTTCGCTAGTGTCATTTGgagtatacagtatttttacaGCTGAACTTCAGGATGAACTTCTCTGGTTAACGTTCATGCACATGCCACTCCGGCCATCTAATAGACAACATGCTTTTACCCCCTCATACATCAACTCAATCATAAATACTCCATCACAGAGgcgattattttattattaattactaatattaattttatttacataaccTTATGTATTTTGCAACATATTGCTATATACAACTATATCTAATTTTAGGTGCTTGAAAAACTGATGAGtgatctatttttatttagtagtATTTTAACAAATTGATTGtactgatattttttaatatctaaATGTCAAGCATGTCTAATTATTCAACGTTTGCTATCGTTACTATTATGGTACCATCTGGTCAGGATTTTCATGCAATCAGAGAtatttgagtgtgtgactgATATTTATTGGATCTGTAAATGTACACAGGTCCacattcactgtttttttttttt

Function

GO:

id name namespace
GO:0046654 tetrahydrofolate biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003934 GTP cyclohydrolase I activity molecular_function

KEGG:

id description
K01495 GCH1, folE; GTP cyclohydrolase IA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234511 lncRNA upstream 17486 17450357 ~ 17450650 (+) True G198050
TU234513 lncRNA upstream 27774 17440148 ~ 17440362 (+) True G198052
TU234512 lncRNA upstream 31184 17431173 ~ 17436952 (+) True G198051
TU234503 lncRNA upstream 52267 17411454 ~ 17415869 (+) False G198044
TU234504 lncRNA upstream 52267 17411454 ~ 17415869 (+) True G198044
TU234553 lncRNA downstream 64724 17538549 ~ 17540320 (+) True G198075
TU234556 lncRNA downstream 68031 17541856 ~ 17542072 (+) True G198078
TU234561 lncRNA downstream 90774 17564599 ~ 17565031 (+) True G198083
TU234562 lncRNA downstream 94553 17568378 ~ 17569162 (+) True G198084
TU234560 lncRNA downstream 96839 17570664 ~ 17572005 (+) False mta3
XM_026914880.2 mRNA upstream 141166 17316264 ~ 17326970 (+) True fshr
XM_026915959.2 mRNA upstream 193575 17125185 ~ 17274561 (+) False nrxn1a
XM_026915218.2 mRNA downstream 6398 17480223 ~ 17487726 (+) True pigf
XM_026915018.2 mRNA downstream 71968 17545793 ~ 17572065 (+) True mta3
XM_026915019.2 mRNA downstream 71968 17545793 ~ 17572065 (+) False mta3
XM_026915020.2 mRNA downstream 71968 17545793 ~ 17570916 (+) False mta3
XM_026914980.2 mRNA downstream 169195 17643020 ~ 17669237 (+) True ppm1bb
TU234137 other upstream 604641 16855770 ~ 16863495 (+) False anapc16
XR_004579176.1 other upstream 3909623 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 3909707 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 4994397 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 6181868 11286197 ~ 11286268 (+) True trnaq-cug_16
trnai-uau_6 other downstream 103458 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 681326 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 968061 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 1332260 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other downstream 1332298 18806123 ~ 18811512 (+) False si:ch211-221j21.3

Expression Profile