RNA id: XM_026915607.2


Basic Information

Item Value
RNA id XM_026915607.2
length 2471
RNA type mRNA
GC content 0.45
exon number 9
gene id tekt3
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 21112476 ~ 21120953 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGCAACGGAAAGCTCACCTGtgtattaataatgcattacaGCAGTCCTATCTGTCAGATCCTGTCAGTCTTTCACGGTGTGTAACAGTGCACAGTCACGGTGGGATCTGGGTTACACTGCAGATACTGCAAGATTGTGACTGATTTGTTTTTGCCTGACAAACATGGAGCTGATCGGTTCGACACAACTGGCAACATACACACGGCCCAAGAGCAGTAACTTCCTGCCAGCCATCTCCACAACAGCATCTAACTACAGAAGCCTCCAGCCGACCCTCACTACCAACCAGAACTCCAACTGGAGGACTAACATGTACTTCAGGAGTGGGAGTGCTATTCCTGCCATCCTCCCCATATCTCAAAGCAAAAACCTGGGCCTGGTTCGGGAAACTATGTTCTACCCATCCAACAGGACTGCACTAATGACACGCTATACACCAGATGACTGGTACAAGTCCAACCAGAACAACTACAGAGAGTCAGAGTCCTCCAGGAAGAGTGCAGAGAGGCTGAGGAAGGACACGATCCAGTTGATCCAAGACCGGGATCAGTTCACACGCAGGACTCAGGAGAACACCAGCAGGAACCTAGGGGAGAGGCTCAACGATATCAGCTTCTGGAGGTCTGAGCTGTGCCACGAGATAGACAACATGGTGACGGAGATAGCGGCGCTGACGGAGGTGAAAAGAAGACTGGAGAGAGCGCTTGCTGAGACCGAGGGGCCACTGCAGgtgtccCAGGAATGCTTGTTTCATAGAGAGAAGAGGATGTCCATCGACCTGGTACATGATGATGTTGAAAAAGACCTGATCAAGGAAGTGGAGGTGATAAAGTCGTGTCAGGAGAGAATGAGGAGGAACTTGGACAAAGCCATTGCACAGCTGGCatcaaatcGAGCAGCGCAGCATGAACTGGAAAGAGATTTAAACGATAAGGTCGCAGCTCAGCGTATAGACGACAGGTGTCATCAGCTGAGAAACACCTCAGACGGCATCAGCTACTACAGAGGCATCGAGCGTCTCGATCCCTCTCTGAGCTTGCCTGACTCGTGGTCAAAGTTCACAGACGACAACATCCTGCACTCTCAGAGTGAGCGTGCGGCGTCACACAAGCTCCGTGACGAGATCGAGGTGCTGCTCAACATCACCTCCAACGAGATGTGGAACCAGTTCAACACCGTTAACATAGCCTTCACCAACCGTATCTCTGAAATGGCTGATACCAAGAACAACCTGCAGGCTCACTTGGCCAAGACCCTTCAGGAGATCTACCAGACTGAGATGCTCATTGACACCTTGAAAAAGGCGATTCGTGATAAGGAGAACCCTCTCAAAGTAGCTCAGACCCGTCTGGAGGAGAGAACCCGTAGACCCAACGTGGAACTCTGCAGAGACAACCCATATCATAGGTTGGTGAGTGAAGTGAGAGAGATTGAGGACACGATTCATACTCTGAGGGAGCGACTAATGGAGGCTGAAAACACTCTTCAGAACCTGGTGAAGACCAAAGTGGCTCTGGAGCATGACCTTTCCATCAAGGCCAACTCGCTCTTCCTGGATCAGGAGAAATGCATGAGCATGAGGAAGAGTTTTCCCAGCACCCCACGCCTGGTGGGATATACATAGAGTCCGGTCTTCCTTTCATGCTAACACAGCTCCAGGTTTCTATACCCAAGATTTcgaaattaaatattattatggGAAAAACCTCATTTGTTAATGGCTAATGAAAGGAAATTAGCAATAATTACAATTAGCATTAATTACAGTACTCCCTAAAGGAAAATGTAAAGAATTTCTTACACGTTTGCAGCTTTAATACATTTGTTTgagtttaaaatcattttacataTGAAAGATTCAAATAAAGTATTTCTGATGAATTGCACATTAATTAAATAGTCTACAATCACCAATGAATTCAtctatcatctatctatctatcataatTGTAGTCAAAGCTCAAACTTATTTTAGCATATTATGTCCAAAGTATGTCCAATATCCAAGGGGATGGGTATAAATGGAGAACAAAATTGGGCCCAAGAGAGAACCTTGAGCAGTTCCAAACCGGTAACAATCtgttaaataagtaaatttacTGAGAGTTTTTCTGCTTATTTAGACTTTCACTGGCCATTCTCAGAATCAATTGACTCTAGTGTGAGATTGTCTCATGATGCTTAGATGTTAGCTTTGTTAATTCACTATAAACAAGTGACTGGTGCTAATTCTCACCTGTAGGTCTGATGTTACAAAAGCCCAGAAATATCCTGTTGTAGCTAAATAACTGGACTCTCAGATTGTTGTTACAAACAAACTTGATGCTAATCTTGTATTGGCTCATCCTGCTACCATATAACCTAGACTAGCTAGTTTATTAGCAACACATActtggaaaaaaatgtacaagttTATAATCAAGGACTCTTTCAATCTCCATTCTTCCTATTAAAAGCTGTTTAAACCTA

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005874 microtubule cellular_component

KEGG:

id description
K18630 TEKT3; tektin-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236496 lncRNA upstream 517032 20595241 ~ 20595444 (+) True G199796
XR_003402864.2 lncRNA upstream 861002 20234816 ~ 20251474 (+) True LOC113527335
TU237058 lncRNA downstream 263123 21384076 ~ 21386033 (+) True G200325
TU237068 lncRNA downstream 336466 21457419 ~ 21457764 (+) False si:ch211-216b21.2
TU237153 lncRNA downstream 489301 21610254 ~ 21610457 (+) True G200418
TU237157 lncRNA downstream 518741 21639694 ~ 21643654 (+) True G200420
TU237170 lncRNA downstream 532278 21653231 ~ 21654736 (+) True G200430
XM_026914643.2 mRNA upstream 43012 21062462 ~ 21069464 (+) True LOC113527122
XM_026914644.2 mRNA upstream 43012 21062462 ~ 21069464 (+) False LOC113527122
XM_026915237.2 mRNA upstream 104091 20979187 ~ 21008385 (+) False lzts2b
XM_026915238.2 mRNA upstream 104091 20992363 ~ 21008385 (+) True lzts2b
XM_026915458.2 mRNA upstream 194452 20912718 ~ 20918024 (+) True hhex
XM_026915385.2 mRNA downstream 18904 21139857 ~ 21152926 (+) True pmp22b
XM_026914739.2 mRNA downstream 336438 21457391 ~ 21500929 (+) True si:ch211-216b21.2
XM_026915925.2 mRNA downstream 492005 21612958 ~ 21639584 (+) True unc13d
XM_026915418.2 mRNA downstream 632388 21753341 ~ 21777831 (+) True kcnj16
XM_026915419.2 mRNA downstream 632513 21753466 ~ 21777831 (+) False kcnj16
XR_004579324.1 other upstream 1545792 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 2300214 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 2300964 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 2602317 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 2953847 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 881871 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 887558 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 1677228 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 2084713 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 2203120 23324073 ~ 23329571 (+) True G201214

Expression Profile