RNA id: XM_026915614.2


Basic Information

Item Value
RNA id XM_026915614.2
length 3026
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC113527622
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 18614191 ~ 18702757 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGACGTCACGCGTAAAGTTCCCACGACCCGGATTATATTCTGAGAGAGATTTAATATGTCTCTTTGAGCCGTGGTCGCTTATAGGAGCGGATGCTTTTTCTTGAGTGAGAGGCAGAGTGACAGGGAGCATATTTTCCTCCACAGTCCCACCGAGCTCCTGCTTTTTTGGGCGGACTGCTATCGGAGCCGTGGGTCTGGTCGCGCGTTCTGTGCGTTCGTGCGTGGACGCTGCGCGGTCGCTTCTCATTCCAGCCACTTTTGAACATCTGCCACTGGATATTAAACCTGAGTGCGTTTGTTTTTCCAATATGTGCGTGAGCAGTGAGTGATGGAATGAGGGTGTAATAAAGTGTACCTCTCTATAAGGGAATTCTCACATCTCCTCACAGCACATAAAGCTCTGCTGTAGGATGCAGGGATGATGCCCGTTCGGCGCGTGAAGGCTCAGCCACGTGTATGGCCACTGAGCACCGAGCCTCCTCCCTGGGTATGGACGATGCCGAGTGCTGCAGGACTGTGTGCTTTGAGCTCCACTCCTCATGCGACCCTCCTTACCTCCGCCcgacctcctcctcctctgcgcACTGTCACGAGCTGGCAGCTCTCCTGCGATCCGTTCTTACCACCACTCATCAGCCCACTTCCAGTGCCGAACGTTCAGTGGGAGCTTACATCTAGACCTCCCATGCTGGGATTTCAGCCTTCTGCGGGTGTTGATCTGGTCCCTGTGTTCCCCGTTGTGTATCGCACTGTACTTCACCCACAGTATGGCAAGTCCTGGCTGGAAAAACGCACACCTGACTACAAGGTTTATCTAAATAATGCTTTGGAGACCTGGATTGGGCCAGAAGAAGTGGGAATTTTTCAGCATCAGGAAAAGCCAGTGCTAATGACAAACCAAGTGGCCATGACCATATCGAGGCCAGCAGCTGCCTCCAGGAATTTCCACACTCTGCTTCTGACACCCAGGCGCATTTCAGGTTGTCCAGTAGCCATAAAACGAGTGCGGAGCAACAAACGGATGGCTCtagcaacagcagctctggtgGCTATGGAATCAGACATGGCCCAGAGGCCATCAGCCTCCTCAGCTCACCCTCTACACTTGCTCTCGCTGTCGCCCATTAAGATCCCACTTCTGACTTCACCTAACCCAGGACCTCGAGGCTCATGGGAAGGTCTGCTGAGTCCTGTTCTGCCCACACAGCTCACTGCTGTGAGATCCCTCTCTGCCCCTGCTGTGACCCTTCTGACTGGTGACTGGAAAGATAAAAAGGCTCCAGAAAACAAACTGGAATTGAGGAAGCCATCCTGCACAGGAGCACTGGTGCTACACTCTGATTCAACACCAAAGGACAAAGTCGAGgaTGAGCAATTTAAGATTAGCATGGATATTGACAGCTCTCCTAAGGACCAACGGCCAGTTGCATCCACTCCAGTGCCGGGATCACCATGGTGTGTGGTTTGGACAGGAGATGATAGAGTTTTCTTCTTCAACCCCACCATGCAGCTGTCTGTATGGGAGAAACCAGTGGATCTAAAAGACCGGGGGGACCTCAACAAAATCATTGAAGATCCTCCACATAAACGCAAGAAGGACTTGTCAGAGGACGGCTCAAATTCCCCCTCAGCTGATGAGGATGAACATGATGATGAAGGAGACCATATTTCAAAATCCAAGCGCAACAAATTGGAAGAGCCAGCTAGTAATTCTGCATCTGCCAgtgaggaggagaatacagaGAGGTGCACAGCGTCCAATCAGATGGTTCTTCCACTTGAACTGCGGATCACGCACTTCAGAGACATGCTCCTAGAGAGAGGGGTGTCTGCATTCTCAACATGGGAGAAAGAATTACACAAAATTGTGTTTGACCCACGTTACCTGCTCCTGGGGCCAGAGGAGAGGAAGCAGATTTTTGATCAGTTTGCCAAAGCGAGGATAAAAGAAGaatacaaagagagaaagaacaaactCCAGCATGCAAAAGAGGAGTTCAGGAAATTACTTGAAGAGTCCAAAATTACATCCAAGTCAACTTTCAAAGAGTTCTCAGAGAAGTACGGCCGAGACCCACGCTTCAAACGCGTTCCCAAGCAGAAGGACCAGGAGCTGCTTTTCTCCCAGTTTGTCAGCGGGCTCAAGAAGCGTGATAAGGAAAACCGAATGAGGCTGAGAAAGATGAGATGAAGCCTCAATAGGCTGTGAAATaaactattttgttttttacagaaTGCCTTCTTGACAGGAATCAAGTCAAACTGCACAATGACACAATATGCCACTGCATCTGACTAAGTAAATGAAACCCATTGCAGCGTCTGCAGTTTTTATTTGAACTCTGGATTTTCAGAACAACAAACGCACAAACAGCAAAGCACCAGAGCCAGCCAGGTTCAACTTTAGAGGTAATTCAACTCTGAGACTGATCTGTTTCATATTGAAGCTCTTAAAATTCAATGTTGCAAgatgtcataataataataaaaaaaagataaaataaaataaagtgtatttcAATAAATAGACAGACTGTACTGTTGGAAGCCATTGACCTGAGCATACAGGtattaagtgattttttttaaggacTGTAAATACATGTTGAGAAGTGTGCACTGTAATGAAGTTTTGTGGACGTGTAATGTGAAGTATGTGGAATGTCACGGCAGAATGTCTGATTCTCCACAGCATCTGTGAGAGTTGCCAAGTTGTCATGTTTTGATGGATTTTTTCACGTTGTCTAAAGTGTTCATTGTGATTAAAATTGTGATTGCTGTTGGAAGATTGAAATGATATAATTGACATCTCTTTAAATCAATCACCTCTTCTTGAATTTGTTCTAAAATCTGAATTCTTGCCAGTAAATTTTTAAGCTTACACTACATAAAATGTAATAGTGAAcaacatcatttatttatcacagaGGCTATTTGTTCTCTCAGCAGAACCAAGATTTTAATGTTTCTGGTTTTGAGTTCCAACACCAACACAATGTTCCTAAACTGATTAGAACAAAATAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235326 lncRNA upstream 82895 18525668 ~ 18531296 (+) True G198767
TU235279 lncRNA upstream 194207 18418083 ~ 18419984 (+) True G198722
TU234820 lncRNA upstream 264778 18348964 ~ 18349413 (+) True G198311
TU234782 lncRNA upstream 436675 18161674 ~ 18177516 (+) True G198282
TU235453 lncRNA downstream 718 18703475 ~ 18703699 (+) True G198876
TU235464 lncRNA downstream 65636 18768393 ~ 18768690 (+) True G198886
TU235481 lncRNA downstream 120876 18823633 ~ 18824561 (+) True G198901
XR_003402870.2 lncRNA downstream 606726 19309483 ~ 19314815 (+) True LOC113527366
TU235663 lncRNA downstream 723623 19426380 ~ 19426595 (+) True G199051
XM_026915376.2 mRNA upstream 106333 18498245 ~ 18507858 (+) True bnip3
XM_026915375.2 mRNA upstream 184503 18421553 ~ 18429688 (+) True LOC113527495
XM_026914764.2 mRNA upstream 265834 18325995 ~ 18348357 (+) False aatkb
XM_034309113.1 mRNA downstream 103320 18806077 ~ 18812262 (+) False si:ch211-221j21.3
XM_034309112.1 mRNA downstream 103333 18806090 ~ 18812262 (+) False si:ch211-221j21.3
XM_026915562.2 mRNA downstream 124879 18827636 ~ 18920766 (+) True ebf3a
XM_034309466.1 mRNA downstream 124880 18827637 ~ 18920766 (+) False ebf3a
XM_026915574.2 mRNA downstream 124882 18827639 ~ 18920766 (+) False ebf3a
TU235296 other upstream 104032 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 455562 18155151 ~ 18158629 (+) False pde6gb
trnai-uau_6 other upstream 1036815 17577283 ~ 17577376 (+) True trnai-uau_6
TU234137 other upstream 1750696 16855770 ~ 16863495 (+) False anapc16
XR_004579175.1 other upstream 5055762 13483301 ~ 13558429 (+) False tcf7l2
XR_004579138.1 other downstream 103328 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other downstream 103366 18806123 ~ 18811512 (+) False si:ch211-221j21.3
XR_004579324.1 other downstream 823885 19526642 ~ 19566684 (+) False LOC113527713
TU237322 other downstream 3300067 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 3305754 22008511 ~ 22012304 (+) False srsf2a

Expression Profile