RNA id: XM_026915619.2


Basic Information

Item Value
RNA id XM_026915619.2
length 2202
RNA type mRNA
GC content 0.50
exon number 5
gene id fam53b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24285081 ~ 24323614 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcccagtgtgtgtgtatatgtttagtAGGAAACATGCAGCAATAAGGAAACACAGCAgcgtatgagtgtgtgtgtgtggttgtgtgtatgtgtgcgcgcatgtgtgtgtgtctgtctgtgtgtggcttttttttaaacaaaatctttttaactttttagtacagtatgcagtaaacaaaaaaacaaacaaacaccagGCTGAGTTGTGGATGTTGTGCGACTGTTCGATCAGCCTGAAAAGATGTTTGGTTTTGGGTCAAGAGGGCTCCTCTCGAAGAACATTCCAGAAGTACCAGGGGGCCAGATGGGAGCGTAAGCAAATCATCTACTgccgtgtgcgtgtgtgtgtgtaaagatggACGCTCGTAGATTTTCCACTCGCTGAAATGGGCTTTCGCAAAGATGTGTGTGGCCATGGTGATCATTCACACTAAAACACTGGAAAAGAAGGGTGTCGATGATGTAACCTCCAAAGAGTCGACCTTTGACTTGCGCGAGCCGTCGACCATGAGCCAGGGAACGGCCCTCTTCTCCTGCGGAATCATGGACTTGGTTAGCGTTGGCCAGCGTCCTGTGGGTTCGAGTCTGGAGAGTCTGTGGGACTCGGGTGCGAGCAGCGCCAGCTCCATCAGCGGCCTCCTGCGGGACCTGAGCCTGAGCGAAGCGCCTTCACCCAGCAAGCGCCAGTGCCGCTCGCGGTCCTGCTCAGACGAGCTGAGCTGGCGTTCGCCGTGGCGTCCGCAGGCCTCGCGGCTTTGGACCACCGTGGAAAAACGGCGCTGCCACAGCGGGGGGGCCATTTTGCCCTCGTCTTCGTCTTCATCCTCTTCCATCTTCTCCAGCATGCAGCGAAGCTCCAGTTTCAGCTTCCCCACCCGCTCCAACCTTCCAGAGACGCCATTTCCTCAATCGTTCACAGCCGTGACTTTCGACCCGACCCGCCCACTCTGCTATTCTCACGAGAGGATTTGCCTGGCTGAGATCGACGCCGCCCCAGAGACCGGTTCTCCAGACTCCGCCTCCGAGGCGGTAGGACTTGCACGGAGCCAGTCGCAGCCTTGCGTACTGAACGACCAGAAAATTGGGATGAAGCGCCGCCGACAGGACGAACCCCACAAACAGAGGCCTTCACTTGACTTGGCTAAGATGACCCAGAAACAGAATTTCCAGAGCCTCAGTTGCCCTCGCTTTAACAGCGATGACGGCTGTCAATCAAGCCAGACCCCGCCCACTTTCGACAGCCCCGTCCACCAGAGCGAGAAAGCGTATCCCCTCAGCCCTAAAGAAGACTCGTCCGTCATCGACGAATCGGACGGCGACTGGACCAGCGGGAAGGAGCGAGAGCCTCCGTGGGCGGAGCTGTGCGGGTTGAGGAGGGACGTGTTGGGCGGAGAACTCGATATCGAGCAGATCGAGAGAaattgagactttttttttttggaggaggaggaggatgtcTTTATGTCCTCGTCACCCTCGGTTCTCGCGTTCCTCTACATCCTGTAGCGATTCGTGCTTTTTGGAGCAGGGAGGGAGCTGAAGTGGGGGATGAAATAGGACTCAGGAGAAACGGACGCACACAAACGGAAATGTGGGACGTTAGGATGACTCAGGTTGAatctcgaaaaaaaaaaaaaaaaaaaaacagagtggaTTCTGGGATATCGGGGTTCTGCTCGCGCTCTGTTGCAGATATTGTagctttttattccttcttcttcttcttcttcttctctaaaGGAAGTATGAAACGACGGCGTACGTTCTCAGAGTCCGACCTGCCTGTCTGTGCTGAATGAGGAGTGAACGGGggaaaatataaatctatatttttaaggatgtattctttttttttttttttttactccgtTCATCCGAAAGTACACGGCATCACGAAGAAGGACggaaaggaaaaacagaagaaggTTCTGAGAGCCGACTGCCGTAAAAAAAACGAGGACTTACTGTTGAACTTGCACTGGCATTGatgcacacattacacacacctcacacacacacacatctttcacacacacacacacacacacctcacacagtGAAAAGCTTGGAAAGGGTTTCAGGTTTTAATAACGTTGAATGATAATTTCAAGCTAATAGAGTTTAATTCCTCTTTTTACGAAGTGTAACGTAAAATGTACTTATTTCTATATGAATAAACAGCGTTTAAAGTGTGTTTGTAAA

Function

GO:

id name namespace
GO:0031101 fin regeneration biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238736 lncRNA upstream 48302 24235503 ~ 24236779 (+) True G201782
TU238739 lncRNA upstream 48531 24203862 ~ 24236550 (+) False G201782
TU238732 lncRNA upstream 48531 24235503 ~ 24236550 (+) False G201782
TU238779 lncRNA upstream 59455 24224878 ~ 24225626 (+) True G201814
TU238756 lncRNA upstream 128116 24156506 ~ 24156965 (+) True G201793
TU238812 lncRNA downstream 13410 24337024 ~ 24338068 (+) True G201843
TU238813 lncRNA downstream 14520 24338134 ~ 24338730 (+) True G201844
TU239003 lncRNA downstream 156643 24480257 ~ 24482442 (+) True G202007
TU238986 lncRNA downstream 181698 24505312 ~ 24506076 (+) False LOC113527444
TU239131 lncRNA downstream 352068 24675682 ~ 24676158 (+) True G202115
XM_026914779.2 mRNA upstream 11258 24267278 ~ 24273823 (+) True hpdl
XM_034309375.1 mRNA upstream 49997 24132906 ~ 24235084 (+) False ctbp2l
XM_026915299.2 mRNA downstream 56687 24380301 ~ 24398447 (+) True oat
XM_026915268.2 mRNA downstream 132045 24455659 ~ 24505970 (+) False LOC113527444
XM_026915269.2 mRNA downstream 132045 24455659 ~ 24505970 (+) False LOC113527444
XM_034309455.1 mRNA downstream 132045 24455659 ~ 24503940 (+) False LOC113527444
XM_034309454.1 mRNA downstream 165329 24488943 ~ 24505970 (+) True LOC113527444
TU238026 other upstream 886421 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 955510 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 1078702 23205666 ~ 23206379 (+) True G201154
TU237829 other upstream 1413797 22798181 ~ 22871284 (+) True mrpl27
XR_003402874.2 other upstream 2272777 22008511 ~ 22012304 (+) False srsf2a
TU238950 other downstream 58173 24381787 ~ 24382287 (+) True G201962
TU239119 other downstream 337611 24661225 ~ 24665525 (+) False LOC113527710
TU239415 other downstream 1005595 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 1174101 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 1174566 25498180 ~ 25502628 (+) True G202374

Expression Profile