RNA id: XM_026915644.2


Basic Information

Item Value
RNA id XM_026915644.2
length 3164
RNA type mRNA
GC content 0.47
exon number 13
gene id si:ch211-180a12.2
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5555957 ~ 5572889 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAAAAAGTTGTTGATAAGGCATGCGTCCACAGAGCAGTGAAGGGTCATGAAGTTTAAAGTcctgttgtgtttctgtgtccTGAGCCAAATAAAGCAGGTATTTCCCACAGAGATATCTGTGCATCTGAGCTCCTCTGCTGTCCTGCCCTGTTCGTTTCAGCTTCCAGACAACGATGAACTTCTCAACGTCACTTGGTCCTTCAACGGATCCGTCATTGCATCCAATAATCAAACAGAAAGTGGACATCACTTGACTCTGTCAGCCAGTGGACTCAGTGGATTTTTCCCCCTGATAGTGTATAATGCTACTCTACACAATCAGGGGGTGTATGAGTGCCATGTAAAGAGCAATCTGACCAATTATTTCAACAATGTCACACTGATCATTTTGGCTCCACCGTCCATATCCGTGCCTTCTCCAGAGGTGGTGTTGGGGCGAGAGAGTGCAGTAGAGTGTTGGGCGAAAGGCTTCAGTCCTCCTAACATCACATTCTCTTGGACACGAGCAGGCAAAGAGATCAGAGCTCCTCAAAAAGCCAAAACAAACCACACAGAGGATGGTCTATATGAAGGTCTCAGCCAGCTGGTGTTCATTCCTGAACTTGCTGATCGAAACACTACATATGCCTGTGTGGTGAACCATGAAACTCTGGAGAAACCACTTGTGAGAGAGTTCAGAATAAACATCACCATCCTTCCCAAAGTCACTGTGTCTGTTGTGCCATCCTCTTCGCGCTCATCCCCCCTCACTTTAGCATGCGAAATCAACGGATTCTACCCACAGAATGTGTCTGTGCTGTGGATCAGGAATGGCACTGTCCTGCCTGAGACTCCTCAGATCCAACAGAACAATGATGGAACATATAGAATGCGTCGTTTTCACACTCTCAGCAtcgaggagagagagagagctggacaaGTGCAGTGTGTGGCTCAACAACCTCACATATCTCAACCAGCTTTGAGCTCCATTGACCCATCAGCTGCTGATTCGTTGGTGCAGAAGCTTGTTCTGACTAAATCTGCAAAAGCCTCAGTGGCAATGATGATCATCTCCCTGGTACTCGTCCTTCTGCTTTGTTTTGGCTTCTCCTGGAAGAGAAGAGATGAGAAGCAGAAAAGTTTAAGTGTGTCATGCATCATTCTGCCCCCGAGGGTTGTGGTGGGACAGAAAGGCCGGGTCACCATCAGCATAGAAGGAAGAAGAGCAGATCAAGTCCAAACTGCCTGGTTTCTCAACGATGTCCCCATAGTAGATACATCTTACAGAGAAAGCAATGGCTCAAGAAGTCACACTCCAAGGGCATCCCGTATATCAGTATTGTCAGAAAAAGCCCCTCTGCTGGCCTCTACTGCTCGAGGTTATTACAAACTGCATATGCGGAAGCCCGTGCACTCGACCGGCCCCACCAAACAGCTCCTTTCCTCCTTCACCTTCATCCCCAACTTGTCTGTTCACAAGGGGGCAGTCTTCAAATGCCAGATTTCCTATAAAGGGAAGGACAAGATAGTGATGGAGAGAGTGTCAGAGAAGTTTACTGTTCTGTcACCACCTGAGGTCTCAGAAATCCATCTCTCAGAGCCAAATGAAGAGACAGGTATTGTCATAATGACTGTCGAGGCCTCCCACTTCCACCCAGACGTCATCACCTTCCGCTGGTTCTGTGAGGGGGGAGAGCTGAGCCCCGTGGCTGTCCCCTCAGCCCTGGCAGCACCACGTCCCAATGCCCAAGGCTTCTTCTCAGCCCGGAGCCAGTGCAGGTTACCCAAGACCGAGCTGGAGACAGGAGGAACTGCAGTGTGGGTCACCATCCATCACATGTCTCTCAAACAGCCTATCACACGAAAGACCAGAGGGTTCATAAAGAAGCCCACTGTATCAGAAATCAGCTGCGCACCCTACCCATCAAGCCCACAACAGGGACTGTTAACATTGGCCTGTAGAATCACAAGCTTCTACCCTCCTGACATTGCAGTGAAATGGCTGAAGCGATGCAACAATGGGGAGAGGGAAGTTAAGAAAGAGGAAGGGCTGGTGGAAGTATGGGGGCCCATCCAGACACAGCTGAGGACATTTAGGGCCATGGCTGTGCTAACAGAAGTGGAGAACGGGCTGAAGGACTTAGATAAGGATGGAAAGATTGTGTGCAGAGTTGAGCACTGCTCCCTCCTCGAGCCAATAGAGCGAGTCTGGACAAACTCTCACTTTGTGGCTCCCTCCATCCCTGCATCCTTGTCTGTTAACTGGAATAATGATAGTTTAGGGGTGTTTTCCTTGTGCCTGTCTGGTGGCATTCCACATCCCAAACTGCAGTGGGCTGCAGGGGGTTCCACTCTCACACCACTCATctccagagagacagaggaagtgACAGACAAAGCAGGAAGAGAGCTACACAGTGTCTGTGCTTTGGTGAAGTCCAAGGTACCACAAGGAAGCGAAGCCAACGTTCGCAATCTCCGAAGTGGACATACATGCAATTCTCAGTTTCCAGTATTGCAAAGTGAAGCAAAAGATGAGATGACAGACAGTGAAAGAGGACAAGAGAAGCAAACAGAAAGAGCTGCAGTGACACCAGACATCACAGAGGAGACGACAAGAGAAGCTGGACAGACTGAACTTGAGTCTTTGTACATAAACGCAGTATATGTGGGGAAAGAAGGAGGAcgggcagagagagagtgtctgaGAGTCACAGTGGAGATTACCCATCCTGCACTTCACCTGCCTGTTTACTGCACCTGGACAGAGCCTGAAGAGGAAGTACACTCctaataatgaagaaaaaattatccaacattttttttttgcctttttattttctccttacATTTACAACTTACAGcatgtattattttcatttatatgttAATTCTATAATACTATGAATTTCAGTTTTAGGACTAATAACTTATTTTTACAAAAGTGTTAAATTATGAAGAAAGTTCTGTGCTGTACACTTTAGATGCTTGAATTTACCACGTGCCAAAATGGCATGACAAGTTGCAGATGTTTATCTGTTGTAATAATACTGTTTATTGGTGGTTTGTCCTAATGTGTAACACTACTGTATAAAGgcggtgtgtgtgagaggaggtGGAGCGAGGGGTTGTGTATAGCATGTTAGTtataataaagtttttattttgcaaaagaGAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226605 lncRNA downstream 66846 5488817 ~ 5489111 (-) False gdpd3b
TU226604 lncRNA downstream 71290 5482620 ~ 5484667 (-) True G191424
TU226592 lncRNA downstream 110790 5442962 ~ 5445167 (-) True G191413
TU226433 lncRNA downstream 168820 5382995 ~ 5387137 (-) True G191279
TU226166 lncRNA downstream 636980 4911734 ~ 4918977 (-) True trnap-cgg_3
TU226650 lncRNA upstream 93284 5666173 ~ 5667846 (-) True G191463
TU226652 lncRNA upstream 94995 5667884 ~ 5669753 (-) True G191464
TU226656 lncRNA upstream 115705 5688594 ~ 5689568 (-) True G191468
TU226688 lncRNA upstream 167089 5739978 ~ 5740199 (-) True G191490
TU226700 lncRNA upstream 195639 5768528 ~ 5776020 (-) False LOC113527291
XM_034309296.1 mRNA downstream 1050 5545841 ~ 5554907 (-) False LOC117598535
XM_034309294.1 mRNA downstream 1051 5545841 ~ 5554906 (-) False LOC117598535
XM_034309295.1 mRNA downstream 1052 5545841 ~ 5554905 (-) False LOC117598535
XM_034309293.1 mRNA downstream 1053 5545841 ~ 5554904 (-) True LOC117598535
XM_034309298.1 mRNA downstream 10072 5540886 ~ 5545885 (-) False si:ch211-136m16.8
XM_026915836.2 mRNA upstream 41541 5614430 ~ 5618990 (-) True aldoab
XM_026915461.2 mRNA upstream 101835 5674724 ~ 5677961 (-) True vkorc1
XM_034309612.1 mRNA upstream 119231 5692120 ~ 5709289 (-) False zgc:92313
XM_034309610.1 mRNA upstream 119231 5692120 ~ 5709267 (-) False zgc:92313
XM_034309609.1 mRNA upstream 119231 5692120 ~ 5708888 (-) False zgc:92313
trnav-uac_7 other downstream 82487 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 253752 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 492562 5059527 ~ 5063395 (-) False LOC113527048
TU226185 other downstream 603098 4949163 ~ 4952859 (-) True G191056
trnap-cgg_3 other downstream 636985 4918901 ~ 4918972 (-) False trnap-cgg_3
TU226617 other upstream 38231 5611120 ~ 5613954 (-) True G191430
TU226699 other upstream 195639 5768528 ~ 5776020 (-) False LOC113527291
XR_004579320.1 other upstream 975182 6548071 ~ 6594390 (-) False itga3b
trnap-agg_9 other upstream 2885438 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 2902370 8475259 ~ 8475340 (-) True trnal-uag_3

Expression Profile