Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026915648.2 |
| length | 1297 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 4 |
| gene id | dkk1b |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 7021923 ~ 7023638 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0042074 | cell migration involved in gastrulation | biological_process |
| GO:0021879 | forebrain neuron differentiation | biological_process |
| GO:0090090 | negative regulation of canonical Wnt signaling pathway | biological_process |
| GO:0003197 | endocardial cushion development | biological_process |
| GO:0043697 | cell dedifferentiation | biological_process |
| GO:0061011 | hepatic duct development | biological_process |
| GO:0070654 | sensory epithelium regeneration | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0048919 | posterior lateral line neuromast development | biological_process |
| GO:0007398 | ectoderm development | biological_process |
| GO:0030334 | regulation of cell migration | biological_process |
| GO:0030903 | notochord development | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| id | description |
|---|---|
| K02165 | DKK; dickkopf |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU227373 | lncRNA | upstream | 236327 | 6778164 ~ 6785596 (+) | True | G192043 |
| TU227359 | lncRNA | upstream | 293532 | 6725985 ~ 6728391 (+) | True | LOC113527389 |
| TU227354 | lncRNA | upstream | 324953 | 6696732 ~ 6696970 (+) | True | G192029 |
| TU227167 | lncRNA | upstream | 548457 | 6463389 ~ 6473466 (+) | True | G191868 |
| TU227164 | lncRNA | upstream | 560909 | 6460811 ~ 6461014 (+) | True | G191866 |
| TU227745 | lncRNA | downstream | 375705 | 7399343 ~ 7399628 (+) | True | G192394 |
| TU227775 | lncRNA | downstream | 450799 | 7474437 ~ 7475004 (+) | True | G192422 |
| TU228011 | lncRNA | downstream | 915403 | 7939041 ~ 7939584 (+) | True | G192591 |
| TU228075 | lncRNA | downstream | 1045505 | 8069143 ~ 8071592 (+) | True | G192650 |
| TU228069 | lncRNA | downstream | 1103135 | 8126773 ~ 8141060 (+) | True | G192644 |
| XM_026915240.2 | mRNA | upstream | 6186 | 6862071 ~ 7015737 (+) | False | prkg1b |
| XM_026915239.2 | mRNA | upstream | 6186 | 6869665 ~ 7015737 (+) | True | prkg1b |
| XM_026914654.2 | mRNA | upstream | 185540 | 6822740 ~ 6836383 (+) | True | asah2 |
| XM_026915438.2 | mRNA | upstream | 206478 | 6796007 ~ 6815445 (+) | True | sgms1 |
| XM_026915437.2 | mRNA | upstream | 206478 | 6796007 ~ 6815445 (+) | False | sgms1 |
| XM_034309438.1 | mRNA | downstream | 404907 | 7428545 ~ 7435736 (+) | False | tfam |
| XM_034309453.1 | mRNA | downstream | 423880 | 7447518 ~ 7514069 (+) | True | bicc1b |
| XM_026914934.2 | mRNA | downstream | 502950 | 7526588 ~ 7547407 (+) | False | phyhiplb |
| XM_026914935.2 | mRNA | downstream | 505973 | 7529611 ~ 7547407 (+) | True | phyhiplb |
| XM_034309630.1 | mRNA | downstream | 748706 | 7772344 ~ 7795900 (+) | False | rhobtb1 |
| XR_003402840.2 | other | upstream | 187666 | 6822740 ~ 6834257 (+) | False | asah2 |
| trnap-cgg_7 | other | upstream | 231978 | 6789874 ~ 6789945 (+) | True | trnap-cgg_7 |
| trnap-ugg_20 | other | upstream | 233157 | 6788695 ~ 6788766 (+) | True | trnap-ugg_20 |
| trnap-agg_8 | other | upstream | 234321 | 6787531 ~ 6787602 (+) | True | trnap-agg_8 |
| trnap-cgg_6 | other | upstream | 235500 | 6786352 ~ 6786423 (+) | True | trnap-cgg_6 |
| TU227741 | other | downstream | 404941 | 7428579 ~ 7436372 (+) | True | tfam |
| TU227843 | other | downstream | 582343 | 7605981 ~ 7628111 (+) | True | G192484 |
| trnaa-ugc_7 | other | downstream | 2084048 | 9107686 ~ 9107757 (+) | True | trnaa-ugc_7 |
| trnal-aag_6 | other | downstream | 2084214 | 9107852 ~ 9107933 (+) | True | trnal-aag_6 |
| trnad-guc_4 | other | downstream | 2241136 | 9264774 ~ 9264845 (+) | True | trnad-guc_4 |
