RNA id: XM_026915654.2


Basic Information

Item Value
RNA id XM_026915654.2
length 1890
RNA type mRNA
GC content 0.40
exon number 3
gene id maff
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11096965 ~ 11100503 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATTCCGGGAAAAGGCGGACTGTGGCGTTGTAGTGTAAAGTTGCTGAATTTGTTCATGTAAGTTCTTTAGTTCTGAATGTAAAGAACATCGTCGAATATCTGTTTTTTGGCTACGTCGGAAGGGCACAAGTTCAAGTCCACACCAGGTATCATAAAAGAACAAACGCAACTATGACATCAGACAGCAGAGCCAGCAAAGCCCTACAGGTAAAGAGAGAGTGTGGAGAGAACGTTCCTGTGCTGTCGGACAGCGAGCTCATGTCTCTGTCAGTGCGTGAGCTGAACCTGCACCTGCGTGGTTTGTCCAGAGAGGAGATCCAGAAACTAAAGCAGAGGCGGCGTACGTTGAAGAATCGTGGCTACGCAGCCAGCTGCAGGGTGAAGCGCGTGTCCCAGCGCGAGGCCTTGGAGCAGCAGAAGAAGGAGCTGCAGCGCGAGGTGGAACGGCTTGGAGCAGAGAACGCAGGCATGCGCAGGGAGCTGGAGGGGCTCGGGGCTCGACTCGCAGCACTGCAGCGCTTCGCCCGCAGCCTCGAGTCTGCAGGAGGCAGCATTCTAGCTACAGCGCCTCGCCTCAACACTGCCTCTGTCATCACCATAGTGAAGAGCCCACAGCAAAGCCATGGCCCCAGAGAGCAAGAGGCGTCCTAGGGATGAGTCATACAGGCAATaggcaaacacatacacacactctcaaacaggTAGAAGTACAAGGTACACAACAACTGGACCTTCTAAGCTGAAATGAATGACTGCCAAACATTTAGGAATGTTACACAACAAATAGTTGTGTAAGGAAAGTCATTGATGTCAGTGATGCAGGATTGCTTGCAGAATCTTTTGCCACACTATTACCCCAATGTtgcattttattcacattttgtgtattggtTAATTGGACCATTTAGATAATGAGAATGCAGGGCAtgtctgcattgtttttttttttacatgtttttgtgGACAACAAATTATTTTGTGTTCTGAATTTGAGAATTATTTGATTGTATTCACCAGTTTTATGTTTGGTCTATTGCATTTGCTTTAACCATTATAACTAACATATAAATAGGGTAAAGTTGGTAAGTTTACATGTAACGTAgcttgaaaatattttaattataccaGTAATATTTATATGCCCAATTTTTGTTGTCACATGAAAAACTAGTCATAACTGTAGAGAATGTCTTTACTGGATTAATGATTAAGCTTGACTTAATATCTCTGACTACCAACTTGTTGTAAGTTGGCAAATATTGCTGGAATATATTCATAGTTATGATTAAGAAATAATCATAATTAATCTGTTATGATTAATAGAATGCCACGCCATGTCAATGCAAGCTTCTCAATACATTCCCACATATATTTTCAGTACTTAATCTGCAACATGGagatttctttttgtctgtacTTATAGATGAAGACCTAAAAGCTAGAGTGCTGTGATTTTACGTCCAAATACTGTTTATGTATAACTAGTTTGGGAATATTTTCATGTCCAATTATTGTAATGGTGTGATTTGTATTTAGGATAAGTATATTTTAATGAGCAGTTCAGCTATGCCAGTGTGTTTCCACTCCTGCTCTTCACAGAATATTTTAGTGTCTCCCTTACCCTAACATTCATTTAGCTGATAATTTGAGAGAGGTAACAGGGAAATGCTAAAACAGTCATGACAGAGTGGGACATGTTACTGGAATATTTGTTCCAGTATGTGTGATGACTGTATTTGTGCTAATACATTATAGTGGCTTGTTTGCAGTGGTATTTTTGTACATAAAAGTAGATTATTTATAATGACAACATACTTTTGGAAGTCTAGAAAGTATCACATGAGGGTATAAAGTATGAAATACTAGTGAAGAGTAAATGTGGAATAAAAA

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230113 lncRNA upstream 855 11093163 ~ 11096178 (+) True G194293
TU230188 lncRNA upstream 33351 11062164 ~ 11063682 (+) True G194365
TU230097 lncRNA upstream 129000 10965638 ~ 10968033 (+) True G194278
TU230092 lncRNA upstream 131416 10964950 ~ 10965617 (+) True G194276
XR_003402886.1 lncRNA upstream 307016 10788767 ~ 10790017 (+) True LOC113527761
TU230204 lncRNA downstream 19815 11120318 ~ 11120550 (+) True G194380
TU230183 lncRNA downstream 34729 11135232 ~ 11206976 (+) True G194360
TU230242 lncRNA downstream 147260 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230438 lncRNA downstream 277958 11378461 ~ 11379190 (+) True G194571
TU230527 lncRNA downstream 492389 11592892 ~ 11593091 (+) True G194627
XM_026915487.2 mRNA upstream 159154 10912118 ~ 10937879 (+) True shisa9a
XM_034309550.1 mRNA upstream 159154 10912118 ~ 10937879 (+) False shisa9a
XM_026914993.2 mRNA upstream 275855 10812145 ~ 10821178 (+) True ubald1a
XM_034309528.1 mRNA upstream 317458 10754921 ~ 10779575 (+) False rhbdf1b
XM_034309087.1 mRNA downstream 36354 11136857 ~ 11141931 (+) True si:ch211-141o9.10
XM_026914568.2 mRNA downstream 36354 11136857 ~ 11141931 (+) False si:ch211-141o9.10
XM_026914567.2 mRNA downstream 37900 11138403 ~ 11141931 (+) False si:ch211-141o9.10
XM_026914569.2 mRNA downstream 37938 11138441 ~ 11141931 (+) False si:ch211-141o9.10
XM_034309088.1 mRNA downstream 38181 11138684 ~ 11141931 (+) False si:ch211-141o9.10
trnal-aag_8 other upstream 1032407 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1461966 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1583198 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1584402 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 1584793 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 185694 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 1372180 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2382798 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2382798 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5755267 16855770 ~ 16863495 (+) False anapc16

Expression Profile