RNA id: XM_034309510.1


Basic Information

Item Value
RNA id XM_034309510.1
length 1589
RNA type mRNA
GC content 0.53
exon number 4
gene id LOC113527655
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25260740 ~ 25270653 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACATCTCAGTACTTTAAATCCCGCTTGCAGTTCGTGCTGAAATGAACGACAGATATCACCGAGCAGCACGagatggtcatgtgaccttacTGAAGGAAGCCACTAGGAAAGAGCTGAACGCTGAGGATGAAGATGGTATGACCCCGGTGCTCTGGGCGGCTCATCACGGCAACCTGGAGGCTCTGAGAGTGATGCTGGGGCGAGGCGGAGAGCCGGATAAGTGTGACATCTGGGGAAACACTCCTCTCCACCTGGCCGCAGCCAACGGCCACCTCGACTGTCTTTCCTTCCTCGTGTCATTCGGTGCCAACGTGTGGTGTTTGGACAACGACTACCACACGCCGCTGGACATGGCGGCCGTGCGAGGACACATGGACGCCGTGCGGTATCTGGACTCTGTCGCCGCCAAGCAGAGCGCTCTCAACCCCAAGCTGGTGAGGAAGCTGAAGGAGCGAGCGTTCCATAACGCAGAGCAACGCATTAAACACTGCGCAGAACTGCAGCACGAAAACCAGCGGCGCTTGGAGAAAAAATTCCTGAAAGAGACTGTGGATTCAGGCGCATCTGGATCTCTGAGGTTCTCCCTGAGCAACGGCCGCAAAATCCCACAATTCAACACTGTTAACTCCAGCATCAGCtacacacagGCCACGCTGAACTCCACGGCCAAAGGTAGGAAAAAGATCCCGAAGTGTctggagaagaagaagcaggaTGATGACACCTTTAAGATCTCTGAAGATGGGAGGAAAAGTGTGCGTTCCCTTTCTGGGCTTCAGCTGGGGAACAACGTGATGTTCCTGAAACAGGAGACGTATGCAGACCCTCGCCGCCGACTCCACGTCCGCAACATGTTCCCTCAAAACCCGaacgatgatgatgaggaagaagatgatgatgatgatgatgtggtcGTGGTTTCACATGCAGTGAGTGATCCAGGTCTGTACAGTGACCCGGGAAAGGACTCTCTGTTCTCCCGGCCTGGTCTCGGGACGCTCGTTTTCCGGAGGAATTACGGCAATGATGGAGTTTGGGGGTTCGATTCGTACAGTGTAGAAGGTGAGGAGTTGTTGTGGAGAGAACAGAATCTTCTCTTTAGAGAGCGCGTACATCTCCGACCTCCCAGCCTGGATCAGGACTCCATCAGCAGCTCCGCAAGTCTGCAGAACAGACACTTAAAGGTACaagaacacagagagaGCTTTTCTATGGGATTATacgatggtgatggtgatgatgactatgatgatgatgatgaagaaataGAGTATGATGATCTGCAGCCTTGCTCTTCTCCTCTGGAGGTGTTCTTGGTGTCTCAGGGTCTAGGCGAGTTCCTGTCCCTGTTCCTGAAGGAGCAGATGGACCTGGAAGCTCTGATGCTGTGTTTGGAGCCTAACTTGGCCATCATCAACGTTCCACTGGGACCCAGGAAGAAGCTTCTGGAAGCCTGCAGTcggcgcacacacactctgcagcgAGCCAGGGCCATGTGTGACACTCCGCTCTGagggtgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcaaaagATGAACCTGCTCAATAAAGAA

Function

GO: NA

KEGG:

id description
K21878 USH1G; Usher syndrome type-1G protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239382 lncRNA upstream 60793 25199710 ~ 25199947 (+) True G202310
TU239355 lncRNA upstream 71413 25186782 ~ 25189327 (+) False G202290
TU239356 lncRNA upstream 71413 25186782 ~ 25189327 (+) True G202290
XR_004579129.1 lncRNA upstream 125575 25134451 ~ 25135165 (+) True LOC113527241
TU239347 lncRNA upstream 149256 25110288 ~ 25111484 (+) True G202286
TU239457 lncRNA downstream 20088 25290741 ~ 25290965 (+) True G202342
TU239421 lncRNA downstream 73553 25344206 ~ 25428112 (+) False dupd1
TU239433 lncRNA downstream 87283 25357936 ~ 25428009 (+) False dupd1
TU239454 lncRNA downstream 98677 25369330 ~ 25369655 (+) True G202339
TU239473 lncRNA downstream 133189 25403842 ~ 25409006 (+) False G202354
XM_034309567.1 mRNA upstream 97869 25154992 ~ 25162871 (+) True LOC113527238
XM_034309604.1 mRNA upstream 106843 25146669 ~ 25153897 (+) True LOC117598682
XM_026915692.2 mRNA upstream 180911 25063600 ~ 25079829 (+) True LOC113527669
XM_034309493.1 mRNA upstream 180911 25068556 ~ 25079829 (+) False LOC113527669
XM_026915511.2 mRNA upstream 247449 25007848 ~ 25013291 (+) True lrit2
XM_034309367.1 mRNA downstream 112212 25382865 ~ 25386388 (+) True LOC117598570
XM_034309370.1 mRNA downstream 116182 25386835 ~ 25389881 (+) True LOC113524867
XM_034309368.1 mRNA downstream 120044 25390697 ~ 25394302 (+) True LOC117598571
XM_034309369.1 mRNA downstream 123685 25394338 ~ 25398017 (+) True LOC117598572
XM_034309206.1 mRNA downstream 129867 25400520 ~ 25411259 (+) True dupd1
TU239119 other upstream 595215 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 878453 24381787 ~ 24382287 (+) True G201962
TU238026 other upstream 1862080 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 1931169 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 2054361 23205666 ~ 23206379 (+) True G201154
TU239415 other downstream 58556 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 227062 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 227527 25498180 ~ 25502628 (+) True G202374