RNA id: XM_034309353.1


Basic Information

Item Value
RNA id XM_034309353.1
length 3240
RNA type mRNA
GC content 0.47
exon number 2
gene id znf668
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12462862 ~ 12466434 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTAAAGCCAGCCATTTTGTGTTACACTGGCTGTTATGTGTGGGCTTAAATGCTTATTTAGTGGCTTAAATAATCTTTGCACTGCATTATTAACACTGATCTGCCCAGCCAGCCGGAAGACAATTTCGTCAGGTGTTTCACTGTAGATGCTAAACAACTTCCCTCAGCGAGTGTTTTGTCTGGCTAACTAATTGTCCCTGAGGTCCTAATGCCGGCCATTTTGAGTCGTCTGCTGTACTGTCTACACTCTCTGTTCACTTTAGTACAAACCAAATGATGGCCTCCCCTCAGCCAGGCAGCCCACCTACAGCTGAGCAGCATACACCAACTCCTGAGACGGAGCCCAGTGAAGAGAGTGAGAATACAGTTGAGAAACCAattaaaagaagaaacaaaggGAGACCGTCAAAATCTCAGAACATATTTAAATGCTCAGCCTGCCAGGAAACATTTTCCAGCCCCTCTGCTCTACGGAGCCATAAGCTCTCAGCTCACGGTCAAGACAAGCAGCAGCCATACACCTGTGGGCAATGCAGCAAGACCTTCTCCAGCCGTGCTCAACTCTCTAAGCATCAGCGCTCGCATTCGGCTGAGCGTCCATTCCAATGCCTTCAGTGCCATAAAGCATACAAGACCCACACTGAGCTGCGCAATCACAGCCGCTCCCACACTGGAGAAAAACCCTTTGTCTGTACTGAATGTGGCAAGGCATTTATGCAGGCCATCTGCCTGCGCATTCACATGACGCAACACAGTGGCGAGAGGCCTCATTCTTGTCCGCACTGCTCTAAGAGCTATCCTACGCTGTCCAAGCTGAAAGTTCACCAGCGCTcccacacaggagagaagccttATTTCTGTGCAGAATGTGGCAAGAGTTTTGCCGACCCCTCCGTGTACCGCAAGCACCGGCGCAATCACCAAGGTCACCGGCCATATTCCTGCCAACAGTGTGCCAAGACATATACAGAGCTCAAGGATCTGAAGAACCACGAGCGTTCTCATACGGGTGAAAAGCCATACCTTTGCTCGGACTGTGGTAAGGCCTTTTCGCGCTCCTCCTCCTTGGCCTGTCACCTGCGTATTCACTCCCAGAGCAAGCCATACCAGTGTGAGCAATGCGGGAAAGGCTTCACTCAGCTCTCTTCCTACCAGTCCCACCTTCGCACACACTCTGGTGAGAAGCCCTTTCTCTGTCCACAGTGTGGCAAGATGTTCTCAGACCCTTCCAGCTTTCGCCGGCACCAGAGGGCACATCAGGGATTTAAGCCCTACCCTTGTGACAAGTGTACCAAGAGATTTCGACAGCCAGCTGATTTAGCCGTGCATCAACGTGTGCATTCGGGTCAGAGGCCATACAAATGCCAAAATTGCGACAAGGCCTTCGTTGCGTCTTGGGATCTGCGTCGGCACATGCTGGTGCACACCGGGCTTCGACCATTCTCCTGCACCGATTGTGGCAAGTCCTTTGCAGAGCGCTCCAGTCTCAACAAGCACAGGAGGGTGCATTCTGGAGAGCGGCCATTCAAGTGCCAGATGTGTTTCAAGTCATTTGTCATGTCATCTAGTCTGCGCAAGCACGAAAGGACCCATTTACCTGAGAGACCCGTGCGACAAGAACAGGCCCCTGAATCCGAGCAAGTCTTTTCCCAAAACACCAGGCCACAATTCTCTTGTGTTCATTGTGACATGATCATCTTTGGGACATGGGAGGAGGTGCAGGCCCACGCCAGCCTCCATGCAATCTCTCCTCCATCAGATTCCACAAATATTCGCATTGGCCCATTTATTTGCGAGACATGCCAGGCTGAGTTCCCTCAGTTATCTGAACTCCAGGCACATGAGAAGGTACACCCCAAGCCACGGCCACACATATGTGACAGTTGCGGCAAAGGTTTTCTGAACAAAGCTGGATTACGCAAGCATCAGCGCATCCACTCCAACAGCCGCCCACACTGCTGTGCAGTCTGCGGTAAGTCATTCCTGTTTGCTGCTTACCTCCGCAAACATCTGCGTACACACCGCGAGAATCAGTCATCATCTCCCCTGCCACAGACAGACGCAACCCACACACAGCCACTGCCATCCCCATCGAGTGCAGCCTCCCCAATAAAATCGGAGCCCTCTACGATTTCTCTAACTGTGCCTGTCATTGTACCAGCGACAGCGTTCCAGACAATGTCAGGCCATGTGTACATAAACAAAGAAGAGGACATTTGAAATACCAGTGTATTGGACATGATTTTCAATATTGGGTGGGTGTTTGATTAAGGCAGCAGTTTGGTTTCTTCCTACCTGGTAGGCATGTGACACGCCTTACAAAGCACCCATGCGTGCAAACAGTCCCAGCTTGGTATGCCATACAAAAAAGGGTGGGTAGTGTTGtgtcctcacagctccagggtcacaGGTTTGGTGACTGTCATGGCAGAAGGTGAATTGACTAAGATACattgcccctagttgtgaatgagtgtgtgaaggagtgtaTTCATGGcactctgtgatggactggtgtcccatccagggtgtattcccatctcaagcccactgcaaccctgatcaggataaatcagttactgaaATTGAGTGAGTGAGCTTACGGAGTAGATCCTTTGAGAAGAACGCAGCTGtgtcaaacacacatacatacatacaagtCTCTTGTTAAATCCTGCTGTCCCTTCCACACTTCACAGGCTCTTCAAAGGTTACTTGGATTGTTAAAGGCTCCTGGCTTCATAAAAAGGTTCTGCTATGAACATGTGATAGATCAACTCTCTGTTGCAAGGCTCTATatagaacatttaaaatgttcatttaaaacaatttaaggGTTGTGTATTTACCTTTTTACTGAGTGTATGAAACAAGAGAAGTTTTGTATGGTAACTTTAAAAAGATGCTGTTTATACATTAttagtcattttatttcaaagcattcattatttaaatgaattaattgattacatgattacatataactgtgtgtatttgtgtgattgATCATTGCTGCTACATCAAAGTTCATATCAATCTTTGATATATACATTTTTGCTCTGaagtttcattttgttttataggTTATTGAAAGGGTCAGTATTTTACATACGAGTCAACTTTACACAAATGCATGAATTTATTAGATTATAGCCACTACCTGTACATGTCAGTTTACCCTCCGGTCAAATGGCAGTTTACTCTGACTATTCTGTATTCAATAAAGTTATCTCAAATAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579205.1 lncRNA upstream 9433 12451893 ~ 12453678 (+) True LOC117598562
TU231049 lncRNA upstream 88831 12374010 ~ 12374280 (+) True G195084
TU231048 lncRNA upstream 91826 12371056 ~ 12371285 (+) True G195083
TU231012 lncRNA upstream 213356 12249060 ~ 12249755 (+) True G195047
TU230980 lncRNA upstream 286992 12174394 ~ 12176119 (+) True G195016
TU231214 lncRNA downstream 83700 12550134 ~ 12550360 (+) True G195225
TU231292 lncRNA downstream 176834 12643268 ~ 12643526 (+) True G195287
TU231306 lncRNA downstream 191671 12658105 ~ 12658323 (+) True G195301
TU231526 lncRNA downstream 377891 12844325 ~ 12844561 (+) True G195512
TU231613 lncRNA downstream 492506 12958940 ~ 12963243 (+) False ablim1b
XM_026915424.2 mRNA upstream 16115 12434535 ~ 12446996 (+) False rnf40
XM_026915425.2 mRNA upstream 16115 12434631 ~ 12446996 (+) True rnf40
XM_034309620.1 mRNA upstream 32576 12422750 ~ 12430535 (+) True phkg2
XM_034309621.1 mRNA upstream 32576 12422750 ~ 12430535 (+) False phkg2
XM_026914826.2 mRNA upstream 47321 12407861 ~ 12415790 (+) True nfe2l1b
XM_034309502.1 mRNA downstream 151 12466585 ~ 12468184 (+) True LOC117598642
XM_026915699.2 mRNA downstream 6245 12472679 ~ 12473983 (+) True LOC113527673
XM_034309496.1 mRNA downstream 6257 12472691 ~ 12473983 (+) False LOC113527673
XM_034309533.1 mRNA downstream 17700 12484134 ~ 12487553 (+) True si:rp71-1c10.8
XM_026914610.2 mRNA downstream 17700 12484134 ~ 12487553 (+) False si:rp71-1c10.8
trnaq-cug_16 other upstream 1176843 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 2398485 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 2828044 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2949276 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2950480 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 6249 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1016867 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1016867 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 4389336 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5110849 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile