RNA id: XM_026915689.2


Basic Information

Item Value
RNA id XM_026915689.2
length 2732
RNA type mRNA
GC content 0.49
exon number 20
gene id mpp3b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9884635 ~ 9903223 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTCCACAATGATGGGGATAGTGGGGGATggtgatagagagagaaactgatGAAGGCAAGGCTAAAGACTGTATAtgtagagaaaagagagagagggagggggaaggGAGTCACAGCAGTGGAGTAGGCATTGGCAAAGCCCTCACAGTGGATCGAGCCAGTAGAGCAGTCATTGTTACAGCGCAACACAGGGAGCTTCCATCAGAACAAGAAACACCCCCCTTACACAGACGCGCACACATACGGAGACACAGCAAGGTACAAGGCAGGCAAGGACTGTCAGATGAGCTCATTCTAAGCGTGAGACTgaaaggagagagtgagaagtTGAGGGGAAACACCTGCTGTCTACTTCACTGTGTGTCTTGTGTTTTAATGAGAGAAGCCATGCCTGTCCTCTCACCCAACACAGGCCTACATGAGATGCTAGCATTGCTCACGTCTCACCTGCACCCTGGAGCAAATCACAAAGAGGACCTGGTGTTTCTCCGAGAGGTTTTCAGTGAAAGGAGCCTTGGCTACCTAATGAGAATTCATGAGCGCCTCAGGCAGTACGAACAGCAGAGTCCAACGCCTGTGCTCCACAGTGCTGCCTGCTTGGCAGAGGATGTGGCTGAGGAGCTGCAGAATGGGCCACTAGAAGGAGATGAGAAGGAGCTGCTTATGCTTCTGACTACTCCACATGTGAagGCTGTACTAACAGTACACGACACAGTAGCGCAGAAGAACTTTGATCCCGTGCTGCCTCCATTGCCTGATGATCTAGATGATGAGCTGGAGGAGGAGTCAGTCAAGATTGTTCGTCTAGTGAAGAGCAAGGAGCCTCTAGGGGCGACCATCCGCAGGGACGAGGTCACTGGAGCAGTGGTGGTCGCTAGGATAATGAGGGGCGGGGCCGCTGACCGTAGTGGGCTGGTGCATGTGGGAGATGAGCTCAGGGAAGTCAATGGAAATCTCATCACCCACAAGAGGCCTGATGAGATCAGTCAAATTTTGTCTCAGTCTCAGGGCTCCATCACTTTGAAGATAATCCCTGCCATTAAGGAGGAGGACAAACACAAGGAGAGTACGGTCTATTTAAGGGCCCTATTTGACTACAGCCCATTTGAAGACAAGGCCACACCCTGCCAAGAGGCAGGACTTCCTTTCCTGCAAGGTGACATCTTGCAGGTGGTGAGTCAGGACGACCCTACATGGTGGCAGGCCAAACGTGTGGGTGATAGCAACCTGCGTGCTGGCCTTATCCCGTCAAAACACTTCCAGCAGAGGCGTCTGGCACATAGACTGAAAACTGGCACTTACCAGAGTCCTAAGTCACCAAGTGCACAACCCTATGACCAGGCTTGCAATAAAGAGGACTGTGACTGTGAGGGCAGTGAACAGAACATAGGTAGAGTCTGCAGCATGGCTGCTAGCTTGCTGTCTCTGGTCCCAGTGAATCAGTGTTGGATGTATGATGATGGTCTAATACTAGTTGTAGTTTCTCCAAAGTGTAAGGCGGTGGCACCCACCTGTGGTCAGGCCTTTTCCTGGGAGTTCTATTCAGCAAGTCTTAGGAGAAGTTTCCGATTAAGTCGTAAGGATCGACACAGCTCTCCAGAAGACTCTCAGCCTGCGGAGTCTGGAGAATCCAATTTTCTTGTCTATGAAGAGGTCACACGCTATCAGCAGAAGCCTTCAGACAAACCCAGACTGGTGGTGTTAATCGGGTCTCTGGGTGCCCGAATCAATGAACTGAAACAAAGAGTGATTGCTGAGAACCCACATCAATATGGAATAGCTGTACCACACACCACTCGGCCCAGGAAGAGCCATGAAAAAGAGGGTGTTGAATACCACTTCATCTCAAAGCAGGCCTTTGAGGCAGACATTCAGAGTAACAAGTTTATTGAGTATGGAGAATATAAAGATAACCAATATGGGACAAGTTTGGAGTCTGTTCGGAGTGTATTGGGCAGAAACAAAATATGTTTGGTAGATGTTCAACCTGAgGCTCTAAAAAGCCTTCGCACAGCTGAGTTTAAGCCCTATGTGATATTTGTCAAGCCATTCATCCCTGAGAGCCACCACCACTGCAGCAGAGCCACATCGCCATCAGGAGGTGACAATGGCCACGTCACGGAGGAAGAGCTACAGGAGATGCGTCATTCAGCCGAGCAGCTGGAGCAGCAGTACGGCCACCTGGTGGATAGGGTCCTAGTGAAAGAAGACTCCACCAGCGCTAGTGCAGAGCTCAGGAGCATCCTCGAGCGACTGGAGAGGGAGCCGCAATGGGTTCCAGTCAGCTGGGTCCGAACATGAATCCTGTATCAGTCTGTAACAGGGTGCTCATAAACCTGACAGACTCTGTGTCAACCATATACTATTTTGTAGCTGTGCTAATAGAGCCTCAAGTCTTGCATGAATTAACGTCTGAACAAATTGCATCTGTCAAGCAGGGCTCAGGCTCAACAGTGCAAATTAAAACATGAGCATCCATCCAAACAGAAATTTCATGTACAGGAAAACTGTTACTTATTTAAACTCTGGGGTCAACAGTAGGTGTCGGTACAGCTGGGGCATCAGATACTGTAAGACAAATAAGAGTTTACTTGTTGTGCTCCTTAATTATTTGATGAAATGAGGAATGATTTGTTTATTGGTTATTATTGATTTTTGGTTCTATCTCAAGTGGAGGCTGAATAAGCAAATGGTTGCTGatacaacacaacaacaagTTAACAACCCAaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229298 lncRNA upstream 57771 9825427 ~ 9826864 (+) True G193646
TU229297 lncRNA upstream 60167 9824047 ~ 9824468 (+) True G193645
TU229153 lncRNA upstream 103680 9694909 ~ 9780955 (+) True G193544
TU229145 lncRNA upstream 219119 9663930 ~ 9665516 (+) False arhgap23b
TU229133 lncRNA upstream 231375 9652172 ~ 9653260 (+) True G193542
XR_004579148.1 lncRNA downstream 241130 10144353 ~ 10148786 (+) True LOC117598497
TU229556 lncRNA downstream 321479 10224702 ~ 10226319 (+) True G193842
TU229539 lncRNA downstream 421733 10324956 ~ 10329985 (+) False G193828
TU229536 lncRNA downstream 422417 10325640 ~ 10336247 (+) True G193828
TU229537 lncRNA downstream 429683 10332906 ~ 10336247 (+) False G193828
XM_034309582.1 mRNA upstream 14771 9855734 ~ 9869864 (+) True muc13b
XM_034309584.1 mRNA upstream 14771 9855734 ~ 9869864 (+) False muc13b
XM_034309588.1 mRNA upstream 14771 9855734 ~ 9869864 (+) False muc13b
XM_034309591.1 mRNA upstream 14771 9855734 ~ 9869864 (+) False muc13b
XM_034309586.1 mRNA upstream 14771 9855734 ~ 9869864 (+) False muc13b
XM_026915714.2 mRNA downstream 5965 9909188 ~ 9915137 (+) False ppp1r3cb
XM_026915713.2 mRNA downstream 8333 9911556 ~ 9915137 (+) True ppp1r3cb
XM_026915701.2 mRNA downstream 92277 9995500 ~ 10009123 (+) True ankrd1b
XM_034309444.1 mRNA downstream 111324 10014547 ~ 10025576 (+) False kif20bb
XM_034309441.1 mRNA downstream 111325 10014548 ~ 10025576 (+) True kif20bb
XR_003402888.1 other upstream 249568 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 370800 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 372004 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 372395 9512169 ~ 9512240 (+) False trnaq-cug_13
trnar-ccu_4 other upstream 374839 9509724 ~ 9509796 (+) True trnar-ccu_4
trnal-aag_8 other downstream 161322 10064545 ~ 10064626 (+) True trnal-aag_8
trnaq-cug_16 other downstream 1382974 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 2569460 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 3580078 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 3580078 13483301 ~ 13558429 (+) False tcf7l2

Expression Profile