RNA id: XM_026915692.2


Basic Information

Item Value
RNA id XM_026915692.2
length 3146
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC113527669
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25063600 ~ 25079829 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTCGCGGGAGCGCGCGTTTATTCCCGAGCCGCAGTCGCGAAGAGCGTGTGCGGGAGCGCGCCTGggattttctgttctttctcctGGAGGAACATCACATCTGATTTTAAACGCGTGCAGGAATTATCCAGTGGGCTttaatgtgaacacacacacacacagagacagtgtgtgtgtgtgtgtgtgtgtgtgtttattgtgttggATAAAGGGATGAGCTGATACACATGTGATGgatcacactgatcacacattTCTGGAATGATGGAAAACCTGTTAGGAATATAAACACACTTTACAGCTTGGAGTGTGAGCAGGACATCATCCTCACAGCACACATGaattaagcagtgtgtgtgagagagctgagAAGACCAGAGCCTGGAGGTCGAACTCACAAGCTGAACATAATCACGCACAATAATGAAGATTAAATacaccatctccttggtcttcataGTGGCTGTGATCATCATCGAGAAGGAGAACAACATCATCTCCAAGGTCTCGGACAAGCTCTCTTTGAAGCAGACATCTCAGACTCCACTCCAGACCAGCGGATCGTCTTGGGCGTCTCTCCGACAAAATGCCTCCAGTGTCCCGGTCCTGTCTGAGCTCGACTTCTCATCTTATCTGGAAGAAAAATGGCGTCTGGAGAACATCACCGAGCCCAGCGTAGGCGGGAAACACATACTCCTATTGGCCACGACGCGTACAGGTTCCTCGTTTGTGGGTGAGTTTTTTAACCAGCACGGCGCCAACATGTTCTACCTGTTTGAGCCACTTTGGCACGTGGAGCGCATGCTAACTCTGGAGGGTGGAGGGACCAATGGTACAGTTTTGACGCAGGCTTACCGTGACGTTCTCCGTCAGCTCTTCTTGTGTGATTTCTCCTTGCTGGAGAGCTTCATCGAGCCACCCCCAAAGGATCACATAACGACAGGACTATTTCGTCGTGAGTCCAGCCAGTCATTGTGCAACAATCCCGTCTGCACACCGTTTGTGAAGAAGGGTTACGAGCCTTACCATTGCCGTAAGCGGCGTTGCGGTCCACTAAACCTCACGCTAGCATCCCAGTCCTGCCTGGAGAAGGAGCACCATGCCATAAAGTCTGTACGAGTACGGCAACTAGAGACGCTACGATCATTAGCAGAAGATCCACGACTGGATTTGAAGGTTATTCAGCTGGTCCGGGATCCTCGAGCCATGTTAGCATCTCGTATGGTTGCCTTTGCGAACAAATATGAGCACTGGAAGAGGTGGACCATGGACGGAGACATTCCTGAGGACGACAACGAAGTGAGGAAGCTCAAAGGGAACTGTGAGAACATCCGCATGTCCGCGGAAGTGGGTCTCAAACAGCCCCCGTGGTTGCGTGGACGATACATGCTAGTGCGTTACGAGGACATCGCCATGTTTCCTATGCTTAAGGCAGCTGAGATGTACCGGTTTACCGGCATCCCGTTCACTGCCCAGGTGAAGGAGTGGATCTTGAGGAACACGCAAGCATCCGATAAGGCCAGTGGAGTGTACTCCACCCAGAAAAACTCATCCCAGCAGATGGAGAAATGGAGGTTCAGTATGCCGTTTAAACTCGCACGGATGGTTCAGAAAATTTGTGGTCCCACCATGAATTTGTTCGGGTACACGTTCGCAGAAAGCGAAGAGATGCTGACTGACAAATCGATCAGTTTGATCGAAGAAAGGACTTTCTTATGACCATAGAAcaatttttttacacagaacttAGACTTTtttagaaaagatttttttgaaaTTCTATTTATTATGAAGACTCCAGGAAGAAACCAGGACAAGAGCTGAAAGATCAAATGTACAAACTACAAACCGTATcacaaacatcacaaacatCATGGAGGGATGTAGAGAAATTAATGTGATCAGAAATCATTATCTTGTTCCTACGACATTTTACTCTTTTATGTCCATAAGCCGAACATATCATGTAGCAGAGgacatcatttttcttttattgatcATTTCTGCTTTCAGCCGGTTCGGGTTTCCGCTTAGTTACGATTGCTGTTTTCATCCCAAAGATGAAACTTAAGACACAAAACTTTATTGTAATACTTGGAACTCCGTTGAAACGGTACTTGTTACCAAAAATCGACCAAAAATGCTAACGCtgatgttgctgtgtgtgtgaatgctaaTGGCCAGGATCCAGGGGGACGTATTCCTTGAAGGTAAatagtttaatatttataattagcaTGTGAACTTCAACAGCATCCGATATTCATTTTATAACGAAATTCTGAGCTCTTGGTTTAAACTTTGGTTACCGGTTtcctatattacccacaatcccaTTGGATTTCCTGCTGATAGTTGCGCAGTGGGACATTTTCAGTTGTTAGAATGCTAACACAAACGTTTCACTAAGGAACGTTATCTGCCTCAGTAAAAAGCTAAGGTAATAAGTTAGCTAATTAAAGCTGTCAATTACACATAGACTAGTGGAGTAATAAACAGGTTTACaaattagctagttaattaCTCTAGCTACAGATTCTTAAATACCTGATTTTCTAGCTATGTTGCTAATCATCTTGTTGACTAACTGAAAGGGTTACTAGCGACTGAGCTAGTTTTCtcaatgtgttatttttgtaacCTTCTCCAAAACTTTTGGATAAGTAGCTGAATGTTCTCTGTTTGCGTACATGCTAGGTCAAAGTTTGTTTTAGGCTTGAAGCTGCCTGTTAAAAAAGTAACCGtgttaattattgttattattattttttatattctctcCAGTTTTGGCTTGCAAAGTATGTGTTTTTGGAGGGAATTCACATTTAGTGTAtttgtaatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaccacgTGTGTTAGGGACATTCCTTCTGCAGCTGGCTTGCAGAAATGTGTGAATTCGTCTCCAGAGGTTTTGGCTGTAGACAACTTCTGTCAACACTCTTATAATTGATGTTAATGTGGGAAAACGTTAGCATCCAAACCCCGCTGTGCGCTCCAGTTCCGTTTTTAACATGCGCCATGTCGACTCGCCTTTATCACTCCAAAGTGTGTATGAACTAATTCACATCAGTGGCCActtgcagcaaaaaaaagagtgtttagcaaaaaaaa

Function

GO: NA

KEGG:

id description
K01020 CHST3; chondroitin 6-sulfotransferase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239266 lncRNA upstream 1431 24973904 ~ 25062169 (+) True G202218
TU239263 lncRNA upstream 90360 24971620 ~ 24973240 (+) True G202215
TU239219 lncRNA upstream 126723 24936284 ~ 24936877 (+) True G202182
XR_004579132.1 lncRNA upstream 169546 24872954 ~ 24894054 (+) True LOC117598464
TU239202 lncRNA upstream 172308 24845833 ~ 24891292 (+) True G202172
TU239334 lncRNA downstream 7086 25086915 ~ 25088713 (+) True G202273
TU239347 lncRNA downstream 30459 25110288 ~ 25111484 (+) True G202286
XR_004579129.1 lncRNA downstream 54622 25134451 ~ 25135165 (+) True LOC113527241
TU239355 lncRNA downstream 106953 25186782 ~ 25189327 (+) False G202290
TU239356 lncRNA downstream 106953 25186782 ~ 25189327 (+) True G202290
XM_026915511.2 mRNA upstream 50309 25007848 ~ 25013291 (+) True lrit2
XM_026914853.2 mRNA upstream 60330 24998950 ~ 25003270 (+) True lrit1b
XM_026915509.2 mRNA upstream 198919 24861416 ~ 24864681 (+) True LOC113527566
XM_034309056.1 mRNA upstream 378446 24677184 ~ 24685154 (+) True bub3
XM_026915787.2 mRNA upstream 380825 24677184 ~ 24682775 (+) False bub3
XM_034309604.1 mRNA downstream 66840 25146669 ~ 25153897 (+) True LOC117598682
XM_034309567.1 mRNA downstream 75163 25154992 ~ 25162871 (+) True LOC113527238
XM_034309510.1 mRNA downstream 180911 25260740 ~ 25270653 (+) True LOC113527655
XM_026915668.2 mRNA downstream 180911 25260740 ~ 25270653 (+) False LOC113527655
XM_034309367.1 mRNA downstream 303036 25382865 ~ 25386388 (+) True LOC117598570
TU239119 other upstream 398075 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 681313 24381787 ~ 24382287 (+) True G201962
TU238026 other upstream 1664940 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 1734029 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 1857221 23205666 ~ 23206379 (+) True G201154
TU239415 other downstream 249380 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 417886 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 418351 25498180 ~ 25502628 (+) True G202374

Expression Profile