RNA id: XM_026915700.2


Basic Information

Item Value
RNA id XM_026915700.2
length 1903
RNA type mRNA
GC content 0.40
exon number 3
gene id prph2a
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14268676 ~ 14271524 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGTCATTCAGTTCCTTAGACTGAAGACAGGACAACAGTATTTATCAAAACTACttcattttagttcattttagtTTAGGAAGGAATCTATTTGAAAAGGAAAAGACTTTAGATCAGCTTTATGCCAGCTGAAATCTGACATGGAAATAACTGGAGTGGATTACAAATTGCTGTTTGAAGATTTATATCTAAGACAGACCAAACTTTGGTTGAGACAATAATTTGGCTCTAAATACTGTTGGTGGAGGTCATCTAACAGTGAAAAATACAGGTGAACAAAAGAGTAGACATTTTCTATCTTTATAGATACTAGCACCAAAAGATGGCTCTTTGGAAAGTGAAGTTTGACTTGAAAAAACGGGTAAAGCTGGCCCAGATGCTATGGCTCATGTATTGGGTGTCTATCATGGCTGGAGTGCTTGTCTTCAGCATGGGCCTTTTCCTCAAAATTGAACTGCGGAAGCGAAGTGAGCTTATGGACAACAAGGAAAGCCACTTTGTGCCCAACCTGCTAATTGGTGTGGGACTGTTAGCCTGCGGCATCAGTGCCTTTGGCGGCAAGATCTGCTATGACTCATTGGATTCCTCCAAGTTTATGAAGTGGAAGACAATTATAAACCCATACCTTATCTTATGTTTGCTCTTCAACGTTATCCTCTTCTTCACTGCGCTTTTGTGTTTCACCATGCGGATCCCTCTACAATTTACCCTGGCAGAAGGCCTGAAGAATGGCATGAAATACTACAAGGACACAGATGTACCTGGTCGCTGCTACATGAAGAGAACTCTGGACCTAATGCAGATGGAGTTTCGTTGTTGTGGAAACAACAACTACAAAGACTGGTTTGAGATCCAGTGGATTAGCAATCGCTACTTGGACTTCAGCTCTAAAGAGGTCAAAGACCGAATCAGCAGCAATGTTGACGGACAATATTTGTTAGATGGAGTCCCTTTCAGCTGCTGCAATCCAAGCTCCCCAAGGCCCTGCATTCACTACCAAGTCACCAACAACTCTGCTCACTACAGTTATGACCACCATACTGAAGAACTGAACATATGGACACGTGGCTGCAGGGAAGCTCTAGTTTTCTACTATGGAGGACTGATGAACACTATTGGTGTATTGGTGCTTTTCGTCACTATTCTTGAGGTTGCTGTGATGGTGGGACTACAGTATGTGAACACATCTCTATCTACACTGGTCAACCCAGAAGACCCTGAGAGTGAAAGTGAGGGGTGGATCCTGGAGAAAACAGTCAAGGAAACTTTCACAGACATCATAGTCAAAATTAAGACAATGGGGAAAGGCAATCAGGTGGAAGAGGGGGTGGAAGTGCAGGCAGTTTCTACAGTGAGCTGAATATGCTATGCCTATAGAACATTGACTACTCCATTCCTACCAAAGTAGAGACTGCCTACCTGACATTATACAGCATGAAGTCAAGTCAGCTACATTTtatgtggtttaatataattaatttgaaGATAAATCTACATACCGAGACCTACAAAAGAAATATGAGTCCAAATCCAAATGGAAATTTCTCTCCTTGGTGGGAGCTGTTTTACctgaaaccattttttttcatgctttgcTTCTTTTCATGCTATATATTTTCAAGACATCATTCATTATGCTATAATCCACTACAAAGTTACACAGTGATCTTAGTTTTTCTGCTTATAGTTTGTGGACAGCTGGATGGCATTAGCtggctttaaaatgtaaaacagagAGCATACCTGTATCATTTAATAATAGCTTTAAAACAGTTACGCACAAAAcacttattaaaaacaaatactatAACCCAACTAAGTTTCCAGTATATATGGTTGGTTTGTTGAGATTTGTTCTCAATGGAATAGGAACTCCTGATATGTAGATTGGAATGTGGTGCA

Function

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17343 PRPH2, TSPAN22; peripherin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232472 lncRNA upstream 4290 14264176 ~ 14264386 (+) True G196307
TU232456 lncRNA upstream 76763 14190839 ~ 14191913 (+) True G196294
TU232453 lncRNA upstream 94903 14173290 ~ 14173773 (+) True G196291
TU232454 lncRNA upstream 98864 14169308 ~ 14169812 (+) True G196292
TU232451 lncRNA upstream 102661 14163571 ~ 14166015 (+) True G196289
XR_004579315.1 lncRNA downstream 8710 14280234 ~ 14287826 (+) True LOC117598693
TU232442 lncRNA downstream 15835 14287359 ~ 14324281 (+) True qki2
TU232479 lncRNA downstream 55578 14327102 ~ 14327360 (+) True G196312
TU232482 lncRNA downstream 66439 14337963 ~ 14338270 (+) True G196315
TU232527 lncRNA downstream 252381 14523905 ~ 14526083 (+) True G196360
XM_026915426.2 mRNA upstream 2082 14265346 ~ 14266594 (+) True tbcc
XM_026915135.2 mRNA upstream 15021 14250465 ~ 14253655 (+) True si:dkey-21c1.4
XM_034309504.1 mRNA upstream 15021 14250465 ~ 14253655 (+) False si:dkey-21c1.4
XM_034309505.1 mRNA upstream 15021 14250465 ~ 14253655 (+) False si:dkey-21c1.4
XM_026915204.2 mRNA upstream 22527 14237392 ~ 14246149 (+) True tepsin
XM_034309281.1 mRNA downstream 24767 14296291 ~ 14323797 (+) False qki2
XM_026914988.2 mRNA downstream 24767 14296291 ~ 14323797 (+) False qki2
XM_026914990.2 mRNA downstream 24767 14296291 ~ 14323797 (+) False qki2
XM_034309282.1 mRNA downstream 24767 14296291 ~ 14323797 (+) False qki2
XM_026914991.2 mRNA downstream 24767 14296291 ~ 14323797 (+) False qki2
XR_004579176.1 other upstream 710163 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 710247 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 1794937 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 2982408 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 4204050 10064545 ~ 10064626 (+) True trnal-aag_8
TU234137 other downstream 2584246 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 3305759 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 3883627 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 4170362 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 4534561 18806085 ~ 18812262 (+) True si:ch211-221j21.3

Expression Profile