RNA id: XM_026915701.2


Basic Information

Item Value
RNA id XM_026915701.2
length 1657
RNA type mRNA
GC content 0.43
exon number 10
gene id ankrd1b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9995500 ~ 10009123 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGCAAGGACATCACCATAAGTGCCTggtgttttcagtgtgtgtgtgagccataGTACAGACCTTGGTAATTCCCAAGAGGAAAAACATCACTGCTTACAGCTTGCATCACTGAAGGGGCATTTTTATGATCTTTGAGCTGCTAAGGTGTGACAGGTCTAGGACACTGATGGAGCGCCACTCCTTGGATTTATTTTCTGATGAAGACAATGAGCTGAGTTTTGTTAAGgcTGCTGGCAAGAGTTTTGGCGTCAACGAAGGAGCCGACACTTTAAAACAGGAATATCTGGCAGGTGAATATGAGAAATCCATTTGCCAAGAGAGAAAAGATGAGATGAGGATTAACAGTGACTATGAAATCGCAAAGTCAAACAAAGTTAACAGACTAAACCAGGACTTCCAGAAGATTTTGGAAGTGAGGcagaggaggaaagagaggaagatCTCTGAGCACAAACAACAGCCAGCACCTGAGATAGTGTCTGATTTTGTTGATGAAGATgactttctgaaagcagtagTGGACAACAAATTACCAATGGTTGAGAGTTATCTCGCCAGGCATGCAGACCCAAACGCATGTGATAGTTTCAACCGCACAGCTCTCCACAGAGCGTGCTCTCGGGGGAATGTGGAGATTGTGAGGAGACTTCTGGAAGCTGGGGCTTTAATTGAAAACAAGGATAAGCTTGACGCGACTGCTGTTCACTGGGCCTGCCGTGGAGGAAGCCTACCTGTTCTCGAGCTGCTCCTCAACCACAAAGGCAACCTCCATGCCAAAGACAAGCTCCAGAGTACTCCTCTTCATGTGGCAGTGAGGACAGGTCACTATGAATgtgctgaacatctcattcactGCGGTGCCGACGTCAACGCAAAAGACAGAGAGGGAGATACGCCAATGCATGATGCTGTACGGCTGAACAGATTCAAATTTATCcagctgctcctgctgcatGGAGCCAATCTGAAACTGAAGAACTATGATGGCAAATCACCCATGGACAGCGTTCTGAAGTGGCAGAATGGAGCTAAAAGTATCCTAGACAACTATAAGCACAATAAAAATTCACAAGACAAGTAAAGGGGAGAAGTAGCAACAAGCTGTACAACACTGTTGAGCAGAAAGTGATCCACACTTGAATAGAAAGTGATACTTTTAGGTGGGCTGCTGATATACAAGTTGGAACGGTAATCAGATTTGTTGAaagaaatatgtgaaaatatgaaatattttttgagGGTATTGGAAAGTAGGGTGAAATATAATGACATTAATTGACTAAGAGTTGGTAGCAGACTGAAACAAAATGCTGTAGAAACCTATTGTCCTGTTGTTTGCAGTGCTGTTTTTGGCAGTATGTTTAACTATAAGTTACTGACATTATTAATGGATTTCTTTAAAGCCTAACAAACCAATACTGTGCTTTGAATATGTGCCTTGTTTGATAGTGCCATATACACTCGCTGtccacaacagtctctagagtttacacagaatggtgcaaaaaacatcctgtgagcggaggaTCTGAAAGTTGCAACACGTTGTTggtaagagaggtcagaggagaatgaccagactggtctgagctgacaggaagtctatagtaattcaaataatcactctttacgactgtgatgagcagaaaagcacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229298 lncRNA upstream 168636 9825427 ~ 9826864 (+) True G193646
TU229297 lncRNA upstream 171032 9824047 ~ 9824468 (+) True G193645
TU229153 lncRNA upstream 214545 9694909 ~ 9780955 (+) True G193544
TU229145 lncRNA upstream 329984 9663930 ~ 9665516 (+) False arhgap23b
TU229133 lncRNA upstream 342240 9652172 ~ 9653260 (+) True G193542
XR_004579148.1 lncRNA downstream 135230 10144353 ~ 10148786 (+) True LOC117598497
TU229556 lncRNA downstream 215579 10224702 ~ 10226319 (+) True G193842
TU229539 lncRNA downstream 315833 10324956 ~ 10329985 (+) False G193828
TU229536 lncRNA downstream 316517 10325640 ~ 10336247 (+) True G193828
TU229537 lncRNA downstream 323783 10332906 ~ 10336247 (+) False G193828
XM_026915714.2 mRNA upstream 80363 9909188 ~ 9915137 (+) False ppp1r3cb
XM_026915713.2 mRNA upstream 80363 9911556 ~ 9915137 (+) True ppp1r3cb
XM_026915689.2 mRNA upstream 92277 9884635 ~ 9903223 (+) True mpp3b
XM_026915690.2 mRNA upstream 92277 9884636 ~ 9903223 (+) False mpp3b
XM_026915691.2 mRNA upstream 92277 9884637 ~ 9903223 (+) False mpp3b
XM_034309444.1 mRNA downstream 5424 10014547 ~ 10025576 (+) False kif20bb
XM_034309441.1 mRNA downstream 5425 10014548 ~ 10025576 (+) True kif20bb
XM_034309443.1 mRNA downstream 5425 10014548 ~ 10025576 (+) False kif20bb
XM_034309442.1 mRNA downstream 5425 10014548 ~ 10025554 (+) False kif20bb
XM_034309358.1 mRNA downstream 16107 10025230 ~ 10028121 (+) True LOC117598566
XR_003402888.1 other upstream 360433 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 481665 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 482869 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 483260 9512169 ~ 9512240 (+) False trnaq-cug_13
trnar-ccu_4 other upstream 485704 9509724 ~ 9509796 (+) True trnar-ccu_4
trnal-aag_8 other downstream 55422 10064545 ~ 10064626 (+) True trnal-aag_8
trnaq-cug_16 other downstream 1277074 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 2463560 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 3474178 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 3474178 13483301 ~ 13558429 (+) False tcf7l2

Expression Profile