RNA id: XM_026915702.2


Basic Information

Item Value
RNA id XM_026915702.2
length 2322
RNA type mRNA
GC content 0.43
exon number 12
gene id sfxn2
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13861384 ~ 13871004 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCCAGGGATCCGCCCGTTTCTGTGATTGGCAGCGGAGGTGCCACGTGCTTCCGCGAGCCTACAGGGACCTGCACCGACACCCCGCGCCGTGTTACTACAGCCACTCACCCTCCAGACCCACTCCACCGACACCCAGTCATACTTGCCTGGAGACAGGAGAAAGCACCATGGCAGCTCTGAGTGGCTTTGATATTGATGCTCCACGCTGGGATCAGTCCACGTTCATAGGCCGTCTCAAGCACTTCTTTAACATTACGGACTGCCGCACCGCTGTCCTGTCTAATGCCAAACTGGATGAAGCAAAAGCCTTAGTGGATAGTTGCAGaGCGGGCTCTATCCCTCCAGGTACAACTGAGGAACAGCTGCATTATGCCAAGAAGCTCTATGACTCAGCATTTCACCCTGATACTGGTGACAGGATGAACTTGATTGGCAGAATGTCTTTCCAAGTGCCAGGTGGCATGGCCATCACCGGCTTCATGCTGCAGTTCTACAGGACGGTGCCTGCTGTGGTGTTTTGGCAGTGGGTAAATCAGTCCTTCAATGCTCTGGTCAACTATACCAACCGCAACGCTGCCTCCCCCATCACAccaaaACAGATCGGTGTGGCTTATGCAACTGCAACAAGCACCGCATTGGCCACTGCTGTGGGTCTGAACCTCTACACAAAGAAAGCACCTCCTCTGGTGGCTCGCTGGGTGCCTTTTGCAGCCGTCGCTGCAGCTAACTGTGTAAATATCCCTATGATGAGACAACAGGAGATCTTGAATGGCATTGCAGTCACAGATGAAAATGGCAATAAACTTGGTGACTCGAGAAAAGCAGCAGTAAAGGGCATCACACAGGTGGTTGTTTCCCGAATCACCATGGCGGCACCGGGCATGATCATCCTCCCTATTATAATGGAGAGACTAGAAAGATACAGATTTATGCAGaaaattaCATTTCTCCATGCACCACTGCAAGTGATGATGGTTGGAGTATTCCTGATCTTCATGGTGCCTGCAGCATGTTCACTGTTTCCACAGAGATGCGCTCTGTCTGTGTCCAAGCTGGAGCCAGAGCTCAGAGAATCCATCATCTCCCAGTATGGTGACAGCATCACCCATGTTTATTTCAACAAGGGCTTGTGATACTGTTAACCTGCTTCTCTTAGACTGGAGGAACATCGTCTGGTCCTGATCTTGGCCAGTCCTGAAAGACCAGCGCAAGTCACTGGTTACTCAAATTCATACACATGGGACAGCTtggtttttaatattttaattgtatgACTTTTCTACATTATTTCACAATGTTTGGGGGGAAATGGCATTTGCTATAAATTGGAGGCCTTTGGCCTACTTCTGAATAACCTTCATCACATCCTTGTTTTTGCTCTGTTCCAACTCTTGAGCTAGGCCAGGCAATCAGCAGGTGAGCACTGATTTCCTGGATCAGATGACTTGTGAGCTGGAATTTAATCAAATATGGACTATGTTTTATTGGAATTGGTTGATGTTGGATGGAACAATGGTTATAGAACTGAATACATTGAAAATGCCTTTATTATGTTTACGGTAGATAATTGTTTTACTTGATTTAGTTTTATTGATCAACAAGTAATTGCCCATAAGGAAATGTAGAAATTGAGCCTTTCCTTGATGTATGTGGTCATGAGCAGTTTTACAGCCATTATTAATAGTGAATAAGGAGAGGGGAACTGCTGTTACATACTGATCTCTCAGGAATTTTTCATTTAACGGTTATATGCATTAATGCTTGATTGATTACTTTAATTTGATTACTTGGATAGTTCAGGTAATTACCAGATACCCAGCTGGCCAAGTGTGGAAACTCAAACACTCTCAAGGTCAAAAAAAGGTGATAAAACaaggtaattattattatttttttaaaccaaacctTTGTTCAGTTACGGATGACTCAttttgtgttacagtgtgttgttATATTTGATCAAATGCCCATATTATGTGTTAAAACATAGACTAGTAGCAGACTTGTGCAGTAATAAAGCAGTAATAAGGTTGTAAGGGTGAGTTAACAGCAGTACATCATGTGATTAGACAGTGATTTAGCTTGTGCTCTACAagactggtgttttttttttttttttttcctccttttcctccctcattataacagatttaacacacggatataaaatgtgttataaattacatacattttgaGAGTATCTGTCTGAATGATGTCATAAGGCCATGCCACAGTATTAAAGTGTTATTcatgtgttatttttctttgttccaAAGAAAGGTGTGCcttgtgtacaaaaaaaaaaaatctttggctGGAAA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K23501 SFXN2; sideroflexin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232108 lncRNA upstream 165623 13693715 ~ 13695761 (+) True G195994
TU231960 lncRNA upstream 242445 13618664 ~ 13618939 (+) True G195857
TU231948 lncRNA upstream 343498 13514676 ~ 13517886 (+) True G195847
TU231926 lncRNA upstream 394401 13466765 ~ 13466983 (+) True G195839
XR_003402861.2 lncRNA upstream 794762 13063864 ~ 13066622 (+) True LOC113527319
TU232344 lncRNA downstream 142569 14013573 ~ 14016247 (+) False tha1
TU232348 lncRNA downstream 152583 14023587 ~ 14043932 (+) True G196202
TU232423 lncRNA downstream 255514 14126518 ~ 14127031 (+) True G196265
TU232451 lncRNA downstream 292567 14163571 ~ 14166015 (+) True G196289
TU232454 lncRNA downstream 298304 14169308 ~ 14169812 (+) True G196292
XM_026915381.2 mRNA upstream 12705 13837408 ~ 13848679 (+) True trim8b
XM_026915837.2 mRNA upstream 25014 13826107 ~ 13836370 (+) True mfsd13a
XM_034309287.1 mRNA upstream 63734 13795093 ~ 13797650 (+) False mrpl43
XM_026915480.2 mRNA upstream 63734 13795094 ~ 13797650 (+) True mrpl43
XM_026914976.2 mRNA upstream 102851 13736448 ~ 13758533 (+) True psme4b
XM_026915321.2 mRNA downstream 17505 13888509 ~ 13933419 (+) False cyth1b
XM_026915319.2 mRNA downstream 27599 13898603 ~ 13933419 (+) False cyth1b
XM_026915320.2 mRNA downstream 40857 13911861 ~ 13933419 (+) True cyth1b
XM_026915322.2 mRNA downstream 44245 13915249 ~ 13933419 (+) False cyth1b
XM_034309193.1 mRNA downstream 62900 13933904 ~ 13974593 (+) True LOC113527468
XR_004579176.1 other upstream 302871 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 302955 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 1387645 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 2575116 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 3796758 10064545 ~ 10064626 (+) True trnal-aag_8
TU234137 other downstream 2984766 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 3706279 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 4284147 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 4570882 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 4935081 18806085 ~ 18812262 (+) True si:ch211-221j21.3

Expression Profile