RNA id: XM_026915721.2


Basic Information

Item Value
RNA id XM_026915721.2
length 2728
RNA type mRNA
GC content 0.45
exon number 19
gene id rsph10b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10290457 ~ 10296523 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACACGGTCACCTAGCAACCTGTTGCTGTACACAGACTACCCTAACAAGCTGGTTCAAGAAGCAGCGCACTATCCGACGAGTGTGTTCGGCTTTCTAGCTGTCTGTAATGGCGGAAGGAGACCAGAAGGAAAAGTCAGACAGAATGACATTAGAATTATCGCTTAATGAAGAGGAGAGTTACTCCGCCTCGAGTGTGGCTTCAGACGCGCCAGCTGAGCAAGAAGCGCGTGCGGAGTTAGCATTAGCTACAGCAGAAAACACAACCGAGCCTGAGCTTCCAGCTGTCCATGTCCTCTCAGACATAATTATTCACAGATATGAAGGCGGCAGGTCAGGAGAGTTGTTCCACGGGGAAGGAGTGGCCTACTTTAGGGGTGGACATGTATACAAGGGAAACTTTGTAGATGGCTTTATGCATGGTCATGGAGAATACACATGGGCAGATGGTTTAAAGTAtgagGGGGACTTTGAATCAAATGCTCCTATGGGACATGGGACATACACGTGGTTAGACTGTAGCACCTATGAGGGAGAGGTATGCAATGGCATCTGCCATGGCACAGGAACTTACAAATCTGCCAAAACCTGCACTGTATACAGAGGACAATGGCACAAAGGCCAAAGACATGGCAAGGGGACAATGTATTACAATCAAGAGGCGACATCATGGTACAAGGGTGATTGGGAAAACAACCAAAGAGAAGGCTGGGGTATGCGCTGCTATCCATCAGGAGACACATATGAAGGCCAGTGGAAGAACAGCGTCAGACATGGGGAAGGAACTATGAAATGGATTCATTTGGGTCAGCAATATAGCGGGCAGTGGCTAAATGGTGTTCAGCATGGATACGGGATACACATGTGGTTTGTGCAGCGAGTTTCTGGATCTCAGTATCCCCTCAGGAATGAGTATGAAGGAGAATTTGCTCAAGGCCTGCGTCATGGTCAAGGAACGTTCTTCTATGCAAGTGGAGCAGTTTATTCTGGATGTTGGAAGGATAACAAAAAACACGGTCAGggaaaatttattttcaaaaatggtCGTTTATATGAAGGGGAATTTATTGATGACCGTATGGCGGAATTCCCAGCATCCTCCACTATTTCATTATGTGCACTAGGTGGCTTACCTAGTAGAGCTGAAGAATCAGGCAATAGTGCTTCACTACTTGGGCCTGACATGGCTTTGAACATAGAGACTCTATTAAACCGAATTCCTGAAGCGCAAAGAAGGCAGGAGCTCAGACAGGTGGAATTTGCCATTATGAGACATATTGCATTGCTGAGGCCAATATACAGTCTGTACAGCAGCCTTGGACATGAGAACTCTCCAGACAACACTTTCCTGCTCAGTCACCTACAGTTCTGGCGCTTTCTTAAGGACTGCAGTGTCCACCAGCATGGATTAACACTGGCACAGTTGGACCACCTTATTAACAAGGATATCTCTCCAGGGGAGGTTCATTCACCCTTTAGTACAATGTTGCTGAGAAAGTGGATTAGTTGTGTTGTCATTGCAGCATACCATATTTACCACAGAGACTTTGAGTCCTCTAGCTATGTACTTGCAGAGTGCTTTTCCAAGCTCATGAGGCAGAACATCATTCCCAATGCTAAGAATGTAAAAGGACCTCTTTACTGCCACCCTCTTCGTGCTGTGATTGGCAAGAACTATACAGACAGATGCTGGGAGATATATCAGACTGTCCCTAAAGTCACCTCAGCTGCCATCTCTGACAACATCATGACTGCCAGGCACTTCATCTGGATGTTTAAGGTTCTTGGTCTCTTTGACCATACACTAACCACAAGAAGATTACTGGAGATCCTTTCACTGGAAAATCCTGCAATCTACAGTTCTACTCACAGTAACCTGGATTTGGAGATCACTTTTCTGGAGTTCTTTGAGGCTCTGCTGGGTTGTGCTGAAGTGAAGAACACAGATGGATTCAGAACTGCACAACACAGACAGTGTGAGTTGGGTTATCCTGTTGAGACTTCCTCAAGAGATCAGATGAAAAACAGCCCTATTCTGAGCCAGTTGGCTTCTCCTCAGCAATATGAGTCAACAGTGCTGTCCTCAAGCACCATCAGTTCATCGGCTGCCACCAGCGTAAAATCACTTGAGGAATTTAAATCCAAGGCAACAACACAGTCATCCCTAACTGAAGAAATACAATATAAAGATCAGGGAATTGACCTATCTAAGCTGGCTGTTACAAAAACACCTGAGATGGAATTGAACAAACAAACTACAAGCAGTGTTTTAGACACACATGGGACCAAGCCACCATGTACAAACACAGAAGTAGCTGAAGACGGGCGACCAGAAGAACAGCTGGAGAACTGGATCAACCGTATTCACCAGTTTTTTACACACATATTCTTCCCAGCATATGAACACACCTTGGTGTGGAAAAAGGAGATGCAAAAGGAACACCAAAGACAAACCACAGAACACAGAATCACTCTAGAAAAGGCCAAGGCGAATGCTAAACTAAGAGAGCAACGGAGGGCAGAAGAGGAGAGCTccaaagaaaaagaggagagcTTCAAAGAAATaatggaggaagaggaagagagaagccATGTCTTAGATGACCAGAACAATTCACCTGCAGCTCTCACAACCCCAGTGACCTCCTCCAACTCTGTGGATTTGAAGCAATCACCCAccaacaagaagaagaaaaagagaaaatgacaccaaggttttccaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229556 lncRNA upstream 64138 10224702 ~ 10226319 (+) True G193842
XR_004579148.1 lncRNA upstream 141671 10144353 ~ 10148786 (+) True LOC117598497
TU229298 lncRNA upstream 463593 9825427 ~ 9826864 (+) True G193646
TU229297 lncRNA upstream 465989 9824047 ~ 9824468 (+) True G193645
TU229153 lncRNA upstream 509502 9694909 ~ 9780955 (+) True G193544
TU229539 lncRNA downstream 28433 10324956 ~ 10329985 (+) False G193828
TU229536 lncRNA downstream 29117 10325640 ~ 10336247 (+) True G193828
TU229537 lncRNA downstream 36383 10332906 ~ 10336247 (+) False G193828
TU229541 lncRNA downstream 36383 10332906 ~ 10336247 (+) False G193828
TU229700 lncRNA downstream 53676 10350199 ~ 10350620 (+) True G193972
XM_026915377.2 mRNA upstream 41 10280686 ~ 10290416 (+) True pms2
XM_026914923.2 mRNA upstream 35820 10239770 ~ 10254637 (+) True cyth3a
XM_026914999.2 mRNA upstream 75502 10201989 ~ 10214955 (+) True atad1b
XM_026915000.2 mRNA upstream 75502 10201989 ~ 10214955 (+) False atad1b
XM_034309212.1 mRNA upstream 123542 10135917 ~ 10166915 (+) False rnls
XM_026915350.2 mRNA downstream 59254 10355777 ~ 10359207 (+) True bhlha15
XM_034309040.1 mRNA downstream 121378 10417901 ~ 10486419 (+) False trrap
XM_034309042.1 mRNA downstream 121378 10417901 ~ 10486419 (+) False trrap
XM_034309041.1 mRNA downstream 121522 10418045 ~ 10486419 (+) False trrap
XM_026915821.2 mRNA downstream 122361 10418884 ~ 10487467 (+) True trrap
trnal-aag_8 other upstream 225831 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 655390 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 776622 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 777826 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 778217 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 989674 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 2176160 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 3186778 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 3186778 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 6559247 16855770 ~ 16863495 (+) False anapc16

Expression Profile