RNA id: XM_026915781.2


Basic Information

Item Value
RNA id XM_026915781.2
length 4989
RNA type mRNA
GC content 0.57
exon number 49
gene id col1a1b
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5383011 ~ 5404806 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtttgggcagtagggagtgtgtgtgtgtgtgttggggtctGGGTTTGGAGTTATAACCTCGACGTGTATGATCGGCGCCTGCGGGAACTAAAGACACAACACTCTCGCCTCAAAGAGTCTACATGTCTAACATTTAGACATGTTCAGCTTTGTGGATATCCGGTTAGGGCTGCTGCTCGCGGCCGCCGCGCTCGTGGCGAGAGGACAGGGCGAGGATGACAGCATATTCAGTAGCTGCACATTAGACGGCCAGTCGTACAATGACAAGGACGTATGGAAACCTGAGCCATGCCGGATTTGCGTGTGCGACAGCGGAACTGTCATGTGCGACGAGGTGATCTGCGAGGACATACCGGACTGCGCCAACCCAGAAATCCCCGAAGGCGAATGCTGCCCTATTTGCATCGACGGCACAGAAACACCAACCACTGATAGTCCTGAGaATTTTGGACCCAAAGGTCCCACTGGACCTAAGGGTGACCCGGGTCCCGTTGGACCTGCCGGAAACGATGGCATTCCCGGAGAGCCTGGACTTCCTGGACCTCCTGGCCCCCCTGGACCCCCTGGTCTCGGTGGATACAACTTGCCCCAGCTGTCTTATGGTAGTGAGAAATCCAGCGGCCCAGCTCTTCCTGGACCACCAGGCCCAATGGGACCCCGTGGACCTCCTGGACCTTCAGGTTCtcctgGTCCTCAAGGATTCACTGGCCCTGCAGGTGAACCTGGCGAGCCTGGCCCTTCTGGTCCGATGGGTCCTCGTGGTCCTATTGGTCCTCCTGGAAGGAACGGAGATGATGGTGAAGCTGGCAAAGCTGGTCGCCCTGGTGAGCGTGGAGCCGCTGGTGCTCAGggagctCGCGGTTTCCCTGGAACCCCTGGACTTCCCGGCATCAAGGGACACAGAGGTTTCCCTGGTCTAGATGGAGCTAAGGGAGATACTGGCCCTGCTGGACCTAAGGGAGAGCCTGGTTCACCTGGTGAGAATGGTGTTGCTGGTGTTATGgGCCCTCGTGGTCTGCCTGGTGAGAGAGGCCGCCCTGGACCTGCTGGACCTGCTGGTGCTCGCGGTAACGACGGCAACTCTGGCCCTGCTGGACCTCCTGGACCCACCGGCCCTTCTGGTCCTCCTGGATTCCCTGGTGCTGCTGGAACTAAGGGAGAGACTGGCCCTGCTGGAGGCCGTGGCTCAGAGGGACCTCAGGGAGCCCGTGGTGAGCCTGGTAACCCTGGACCTGGTGGAGCTGCTGGACCCCCAGGTCCTCCTGGTAGCGATGGCAGCCCTGGTGCCAAGGGTTCTCCTGGTCCTGCTGGTATTACTGGTGCTCCTGGTTTCCCCGGTACTCGTGGACCTGCTGGACCCGCTGGATCTGTCGGCGCTGTTGGACCTAAGGGTGTCAATGGTGATGCTGGTGCCCAGGGACCCAAAGGAGAGCCTGGTCCTAAGGGAGAGCCTGGACCTTCTGGACCTCAGGGTCTTGCTGGACCTCCTGGTGATGAGGGAAAGAGAGGAGCTCGCGGTGAGCCTGGCGGTACTGGACCCGTTGGACCTCCTGGACTTCGTGGTGCCCCTGGCAACCGTGGTTTCCCTGGTGCTGATGGTGCCCCAGGCCCCAAGGGTGCCCCTGGTGAGCTTGGCCCCAACGGACCTGCTGGACCTCAAGGAGCCACTGGAGAATCTGGCCGACCTGGAGAGCCTGGACTGCCCGGATCCAGGGGTGTGTCTGGTTCCCCTGGTGCCCCTGGACCTGATGGCAAAGCTGGACCTGCTGGTCCCGCTGGTCAGGATGGTGCTGCTGGACCTCCAGGCCCTGCTGGATCTCGTGGTCTCCCTGGTGTGATGGGATTCCCTGGACCTAAGGGAGCTGATGGTGAGTCTGGTAAACCTGGCGAGAGAGGCATTGAAGGACCCGTTGGTGCTGTGGGTGCACCTGGTAAAGATGGTGATGTTGGTGCTCCTGGACCTTCTGGACCTGCTGGACCTGCTGGAGATAAAGGAGAACAAGGACCTGCTGGACAACCTGGATTCCAGGGACTTCCTGGACCTCAGGGTGCCACTGGTGAGACAGGCAAGGCTGGTGACCAGGGTTTGCCTGGTGAGGTTGGTGTTCCTGGACCTTCTGGTCCCAGAGGTGATAGAGGTCTTCCTGGTGAGCGTGGTGCCCCAGGCCCTGCTGGCCCCACTGGTGCTCGCGGCTCTCCCGGAGCTGCTGGTAACGATGGTGCTAGGggagATGCTGGTGCTGCTGGAGTTCCTGGTGGTGTGGGTTCTGCTGGTCCACAGGGAATGCCTGGAGAGCGCGGTGCTAGTGGACTTCCTGGCACAAGAGGAGATAGAGGTGACTCTGGACCTAAGGGCCCTGATGGTGCCCCTGGTAAGGATGGTCTGCGTGGTTTGACTGGTGCCCTTGGTGCCCCAGGACCTCCTGGTGCTGCTGGAGAAAAGGGTGAACCTGGACCTGTAGGACCTGCTGGATCTACTGGACCTCGTGGTGGCTCTGGTGACCGTGGTGAGCCTGGACCTCCTGGACCTGCTGGATTTGCTGGACCTCCTggTGCCACTGGTTTCCCTGGTGCTGCTGGTAGAGTTGGACCTCCCGGCCCTGCTGGTGCTGCTGGACCTCCTGGCCCTGTTGGCCCAGGTGGTAAAGAGGGACAGCGTGGTGCACGTGGTGAGAAGGGAGCACCTGGTCGCCCCGGTGAGGTTGGTGCTGCTGGACCCCCAGGACCTCCCGGAGAGAGAGGTTCTACCGGTTCTGATGGACCTGCTGGTCCTGCTGGTGCCCCTGGACCTCAGGGTGTGAATGGAGGATTTGGTATTGCTGGTAGCCCTGGacaaagaggagagagaggccTGCCAGGTCCCGCCGGACCAACTGGAGAGCCAGGAAAACAGGGAGGTACTGGTGCAGTTGGTGAGCGTGGACCTCCTGGCCCAATGGGACCCCCTGGTCTGAGCGGAGGTCCTGGTGAGGCTGGCCGTGAGGGTAGCCCTGGTCATGATGGTGCCCCTGGTCGTGATGGTGCTCCTGGACCCAAGGGAGACCGTGGTGAGTCTGGACATGCTGGAGCACCAGGAGCTCCTGGACCCCCTGGACCTCCTGGACCCGTTGGTCCATCTGGCAAGCATGGAGATCGTGGAGAGGCTGGTCCTGCTGGTCCCGCCGGCCTTCCAGGACCTGCTGGTGCACGTGGTGCTGTGGGCCCTGCTGGTGCTCGTGGAGACAAGGGTGAGGCTGGAGAGACTGGAGAGAGAGGCATGAAGGGACACCGTGGGTTCAGTGGCATGGCTGGACTGCCTGGACCTGCTGGCCCCCCTGGTGAGCCAGGACCTGCTGGACCCACTGGCCCTGCCGGACCTCGTGGACCTTCTGGCTCTACTGGTGTCCATGGTAAGGATGGCATGAACGGCATTCCTGGACCTGTTGGACCTCCTGGACCTCGTGGCCGCACTGGAGAGATGGGACCTGCTGGTGCCCCTGGTCTTCCCGGACCCCCAGGTCCTCCCGGTCCTGCAGGCATTGGTGAGCCATTCCCCATCATTCCCCAGCCTGAGAAGGCAGCTGACCCATTCCACGGCTACAGGGCTGATGAAGCTACTCTGCGTGACCGCGATGCTGAGGTGGACACCACCCTCAAGTCCATCAGCCAGAAGATTGAGAACATCCGCAGCCCCGAGGGAACCAAGACAAACCCAGCTCGCATGTGCCGTGACCTCAGGATGTGTCATCCCGAGTGGAAGAGCGGTTCCTACTGGGTGGATCCCAACCAGGGATCTCCTCTGGATGCCATCAAGGTCTTCTGCAACATGGAGACTGGTGAGACCTGCGTCAACCCGACTCGTGCCAGCATTCCTCTGAAGAACTGGTACATCAGCAAGAACATCCGTGAGAAGAAGCACGTCTGGTTCGGAGAGTCCATGCCTGATGGCTTCCAGTTCCAGTATGGCAGCGAGGGCTCCGACTCTGATGATGTGAGCATCCAGATGACCTTCATGCGCCTGATGTCCAACAAGGCATCCCAGAACATCACATACCACTGCAAGAACAGCATTGCCTACATGGACGAGGCCTCAGGCAACCTGAAGAAGGCTCTGCTCCTGCAGGGATCCAACGATGCCGAGATCAGGGCCGAGGGCAACAGTCGCTCCACGTATACAGTCAGCGAGGACGGCTGCACGTCGCACACTGGCACTTGGGGCAAGACAGTCATCGAATATAAGACAACGAAAACATCTCGTCTTCCCATCATTGACATTGCTCCTATGGACATTGGTGCTCCCAATCAGGAATTCGGCATAGAAGTTGGCTCAGTCTGCTTCTTGTAAAAAGATAAATCTGgacattaaaaatgttgttgttttgtttctagCAATCATCTCCAAATCTTTTtctatgcattaaaaaaaaaactcattcgGCTGCAATCAGTCCACGTGCTTACACTTTAACATCCTTGAGGACGGTGCTTGTTGTGATCTCGAGAGACGTTccgcttttctttttttttaagaaaataattttgaggACCACTATTGCCAATCAGCGTCAACATCATGGACACTTAGTGAGAATTTTGTGAGTCATTTGGCaacaagaaaataatatataccTGTACTTGTAAAGTGTAAGATCACCCCCCCCAAAAGATGCCAAAAAAGAGCAAACAACCCAAAAGGTCATGAAAATACCGGTGACTTTtttgccgttttttttttttgccactgcAGAAGGacaatgaaaaaacacacaagtgcTAATGTACCATTTTCTGGTGttgaataaatctgaaaaatgacaATTAAGTGTCTTGTTCTTCCAGCCAAAAGGGGAAAGATGTCAACATCCCATCATTGTGTCACACAGGCTTTAGACTCAAACTCGTAATGGCTACCTCAGGACAACCAATCATGTTACCTATGGGTGTTTGGGGGGACACTAAGGCAGGTTATTaccactcaaaaaaaaaaaaacgtattagCAAACTAAAAA

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226427 lncRNA upstream 202 5382597 ~ 5382809 (+) True G191273
TU226421 lncRNA upstream 16653 5366136 ~ 5366358 (+) True G191267
TU226420 lncRNA upstream 19508 5363288 ~ 5363503 (+) True G191266
TU226407 lncRNA upstream 73637 5308219 ~ 5309374 (+) True G191258
TU226403 lncRNA upstream 78102 5303141 ~ 5304909 (+) False gngt2b
TU226475 lncRNA downstream 107885 5512691 ~ 5513155 (+) True G191310
TU226549 lncRNA downstream 191916 5596722 ~ 5667602 (+) True G191375
TU226496 lncRNA downstream 209601 5614407 ~ 5619108 (+) True G191329
TU226560 lncRNA downstream 266208 5671014 ~ 5671252 (+) True G191386
TU226561 lncRNA downstream 267336 5672142 ~ 5672495 (+) True G191387
XM_026914520.2 mRNA upstream 42490 5330042 ~ 5340521 (+) True LOC113527051
XM_026915802.2 mRNA upstream 78135 5303077 ~ 5304876 (+) True gngt2b
XM_026915637.2 mRNA upstream 98861 5267793 ~ 5284150 (+) True lsm12b
XM_026915015.2 mRNA upstream 132499 5170613 ~ 5250512 (+) False tanc2b
XM_026914576.2 mRNA downstream 17993 5422799 ~ 5434479 (+) True rfng
XM_026914578.2 mRNA downstream 17993 5422799 ~ 5434479 (+) False rfng
XM_026915966.2 mRNA downstream 31453 5436259 ~ 5443878 (+) True dcxr
XM_034309511.1 mRNA downstream 59399 5464205 ~ 5470108 (+) True cabp5a
XM_026915824.2 mRNA downstream 72525 5477331 ~ 5484677 (+) False nif3l1
TU226411 other upstream 42448 5337253 ~ 5340563 (+) False LOC113527051
TU225934 other upstream 543642 4755097 ~ 4839369 (+) False G190865
TU225847 other upstream 787898 4593107 ~ 4595113 (+) False lrrc18b
trnae-cuc_25 other upstream 949699 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225438 other upstream 1600516 3782131 ~ 3782495 (+) False rasd1
TU226808 other downstream 564937 5969743 ~ 5983237 (+) True G191581
trnas-gcu_1 other downstream 811039 6215845 ~ 6215926 (+) True trnas-gcu_1
trnal-aag_2 other downstream 811561 6216367 ~ 6216448 (+) True trnal-aag_2
trnal-uag other downstream 817911 6222717 ~ 6222798 (+) True trnal-uag
trnas-gcu_2 other downstream 818730 6223536 ~ 6223617 (+) True trnas-gcu_2

Expression Profile