RNA id: XM_026915784.2


Basic Information

Item Value
RNA id XM_026915784.2
length 1901
RNA type mRNA
GC content 0.47
exon number 11
gene id sgca
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5405182 ~ 5416607 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGATGCCACTGTCTTTTCCAGCTGGTCTTGTCAGTCAAATTTCAAAACAAGATGGCAGACAGAAGGAACTGGGTTTTAACACTCTCAGTGTGTATAATCTGCTTGCTGGTGGTCCGAGCAGACATCATAACGCACGCTCCAGTGGGCCAGCTGTTTGTGCACGAGCTAAAGAGAGAAGTCTACCAGAATGAATTTGAGCCATTCCTCAAACACTATGGACGTGTGTATAATGACCCCATGGTGTTCAAGTGCAACAAGCAGCAGTTCCCAGACCTGCCACGCTGGCTGCGCTTCGCACAGCGCCACCCGTATGACAACGGCTTCCTGTACGGCACACCGCTGCCCCAAGACCTGGGCAAGAACATCATAGAGGTTTTTGTGACAAATAAACGAAGTTATGAGACTTTCAAGGACCGCCTTGTTATAAACATTGGGCCTGCAGTCAAACAGATGCCTTACCAGGCTGAATTCTTCATTGGGCTGAGGGAGATCGAGAAGGTCTTACCATCTGAGGTTCAGGAGGAGATCAAGCAGGACATCCAGCTGATCTGGGGAACTGATAACCTCGACTACGTCAGCATCACCTCTGCTCTGGACCGTGGTGGACGTGTCCCTCTGCCTCTGGCTGGACACTATGAGGGtgtgtatgtgaagCTGGGGTCAGATCGACCCTACTCCCCATGTCTGCTGAGGCTGCAGACAGAAGCTCATCTGCGAGAGTGTGAGGCTGGAGGGAAGCTCAGCGGagactgcagtgtgtgcagcATCCCTGCTAACTGTGTGACCTGGTGTAAGTCAGCTCTGATTGATTTATCCAGGCCTGTGCCTCCTACTCCGGCACCAACCATGGGTTCGGGCATTCTGGCATGGGGAGGAGAGTTTATCCCACCTGCCTCTCCACCTGAGAGAGACTTTATCCCTGATTACATTGTTACTGTTATCGTGCCCTTCGCTCTCGCCATCCTCCTCTGCCTCATTCTAGCTTACGTGATGTGCTGCAGGAGAGAAGGAGTTCAGAAACGTGACGCCATTACTCCAGAGCTCCAGCTTTACCATCACCACACCATCCATGGGAACTGCAATGAACTGCGGAACATGGCAGGCAGCCGTGGTAGTGTACCACAGCCCCTGTCTACACTGCCAATGTTTAACGCCCGAACCGGGCAGAGGGCTCCTCCAGAGTATCCCTCCGACAGTGTCCACATCCCCCTCATCATGGCCCAGCAGGAACCTAATGTTGACACGCTGCCCAGGAAATAAAGATATGGTTCTTGGGAACCCAGTGAAGGATCACAAGTTGCTGGGGAGTTTTTTTCTGCttgctctgattttttttttctgatctgcATTGTGTGTTTAAGTGCATTTTAATAGGCGTACGGTATGTGCCACTCTGCTTTGCTGTTATGGATAAAGTTGCAGTACCATGTGGCTTTAAGTGCACCAACTGGCTCTTTTAGAAGtgtaatgctaatgtttaaaatctgtatttcatCTATTTCTTGGTGTtaggaaaatatataaatagataccTCTAGAATGTGATTTGCTTACATATTAACCATAAGAACATGTCCTCCGTCCACCCAAATGCTAGCACATGTGTAAATATATCAGTCCAgtaaatcaaatattattatcTAAGCAGTATAGATTGCTTAATTTTATAGAAAGGCAATGAGGCCATGGCAAGAAGATGACATGCCGAACATTCCTTTGACCACTTTAAAACATGCTTTATTTCAGCatccaaaataattaaaaacatctcGAAATATTATACATGTACAAAATAAGTACAGATCCTCTGTTTGGAACCATTAAAGTGTCTGGTTGTGGTTTTCTTTCTGTGCCGCCTTATTTaactaaaaacaaatgaatcaaaacccaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226433 lncRNA downstream 18045 5382995 ~ 5387137 (-) True G191279
TU226166 lncRNA downstream 486205 4911734 ~ 4918977 (-) True trnap-cgg_3
TU225963 lncRNA downstream 654305 4701104 ~ 4750877 (-) True G190885
TU225914 lncRNA downstream 738611 4666312 ~ 4666571 (-) True G190849
TU225890 lncRNA downstream 808359 4596539 ~ 4596823 (-) True G190829
TU226592 lncRNA upstream 26355 5442962 ~ 5445167 (-) True G191413
TU226604 lncRNA upstream 66013 5482620 ~ 5484667 (-) True G191424
TU226605 lncRNA upstream 72210 5488817 ~ 5489111 (-) False gdpd3b
TU226650 lncRNA upstream 249566 5666173 ~ 5667846 (-) True G191463
TU226652 lncRNA upstream 251277 5667884 ~ 5669753 (-) True G191464
XM_034309110.1 mRNA downstream 82707 5312244 ~ 5322475 (-) True LOC113527073
XM_026914669.2 mRNA downstream 110784 5289712 ~ 5294398 (-) True tmem101
XM_026914728.2 mRNA downstream 139825 5256264 ~ 5265357 (-) True g6pc3
XM_026914518.2 mRNA downstream 341764 5059498 ~ 5063418 (-) True LOC113527048
XM_034309046.1 mRNA downstream 406850 4991942 ~ 4998332 (-) True pagr1
XM_034309354.1 mRNA upstream 29865 5446472 ~ 5456359 (-) True lrrc45
XM_026915826.2 mRNA upstream 68084 5484691 ~ 5490925 (-) True gdpd3b
XM_026914514.2 mRNA upstream 85816 5502423 ~ 5509397 (-) True prodh2
XM_026915248.2 mRNA upstream 96160 5512767 ~ 5526387 (-) True eif3c
XM_026915602.2 mRNA upstream 112042 5528649 ~ 5539726 (-) False ppp4cb
trnai-uau_5 other downstream 102977 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 341787 5059527 ~ 5063395 (-) False LOC113527048
TU226185 other downstream 452323 4949163 ~ 4952859 (-) True G191056
trnap-cgg_3 other downstream 486210 4918901 ~ 4918972 (-) False trnap-cgg_3
trnap-agg_4 other downstream 487295 4917816 ~ 4917887 (-) True trnap-agg_4
trnav-uac_7 other upstream 56791 5473398 ~ 5473470 (-) True trnav-uac_7
TU226617 other upstream 194513 5611120 ~ 5613954 (-) True G191430
TU226699 other upstream 351921 5768528 ~ 5776020 (-) False LOC113527291
XR_004579320.1 other upstream 1131464 6548071 ~ 6594390 (-) False itga3b
trnap-agg_9 other upstream 3041720 8458327 ~ 8458396 (-) True trnap-agg_9

Expression Profile