RNA id: XM_026915788.2


Basic Information

Item Value
RNA id XM_026915788.2
length 1758
RNA type mRNA
GC content 0.53
exon number 2
gene id LOC113527709
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24669218 ~ 24674576 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tggagagacggagagaaggagagaaggagagaaggcaCGCGCTCAGGAGGAAGAGATTCTCCATCCGGAGTCACGAGGATTTagactgaaaaataataataatataataataataatcatctaaATCTCAAAAAcgtattttcagttttattttgttttgatttattttcatcttaAGTAGAAATGAGCGCGTGGTGAGTGAGCGATGAGGCTGAAGTGGTggagatggtgatggtggtggtggtggtgatgatgatgatgatgatgaggatgaagatgatgatgatgaatcaGTCTCCAGCCCCGAGCTTCACCATCCGCTCCATCCTGGGCACCGCGGCGGAGAGCGCGAGGCAGGACGGCGGAAGCGGAGGTGGAGGTGCAGGTGGAGGtgcaggtggaggtggaggtggatcgcgtgcagcagcagcagcatcagcgGCGGCGGTGGTGTCGGTGTCGGTGGCGCAGAGGAGGCGCGCGCTCTCGGTGTCCTCGGACGGCTGCAGcgctgaggaggaggagtgcAGCGGCACCGAGTGTTTCTGCaaactccaacacacactctgctccaAAACCCGCCCGAATGCTACAGTAAACAAACCCTCATCAGCAGGGAAGGAGCACACGCTGCACAGCTGCACCAACAGTAATAAAGATGACCAGCGATCAGCGAGTCCGTGCAGTGAGAAGCGCACTGACGGCGGCGCCGATGACAAATCCAGCGGTGGAGACACAGCGAAGAAGAAGACGCGCACGGTGTTCTCGCGGAGCCAGGTGTTCCAGCTGGAGTCAGCGTTTGACGCTAAGCGGTACCTGAGCAGCGCTGAGCGGGCGTGTCTGGCCTCCAGCCTGCACCTGAGCGAGACGCAGGTCAAGACCTGGTTCCAGAACCGGAGGAACAAGTGGAAACGGCAGCTCGCCGCCGAGCTCGAGGCCGCACACGTGGCTCACGCGGCTCCTTCAGCCGCTCGGACTCTGGTCGGGATGCCGCTGGCTGGATTCGGTGTTCCCATGCCGAGATCTGCTGCTTTTCCGATGTATTATCCCGGAAGTAATGTTCCAGCATTTCCTCTGTACAGTCTTTACAGTAACATTGACTGCTGAGGTGGACGTTTGATGGATGCTGTGGTGAAGAGGGTGTGTCTGCAGACAGAGAccagtgggcgtgtctttgagagGGATcgatgggcgtgtctttgagagGGATcgatgggcgtgtctttgagagGGATcgatgggcgtgtctttgagagGGATcgatgggcgtgtctttgagcgTGACATTTGCCGTGTCTTTTAGTGGGACAGGTGGGCGTGTTTGAATGggagacagatgggtgtgtcttagACTCGGAAAAAGATGACGCGTCTTTGCGCTCACGTGTGGACTCATGGATAAACCTTTCAAAAAACATTCTCTCAGGTCAcgaggttagctcatgttagctagttggCTAACAAAATGTATACATGCGTGGCAATGAATACTTGAAGACTTCAATATATGGACACGCCTACATTCTCACCTATAGGTCTTAAAGACCGCCCACTCAGAGCTGCCCTCAATTCCATATATGggctcaaagacacacccacatctCCACCTATAGATCTTAAAAAACCCGCCCACTCAGAACTCCCATTTTTCATATACAGAGTCAACGACACGCCTTCTCTGGTCTAAGATCTGCAGACACACCTTATGGGCCATGGTTGCCAGGCAACCATGatgaacaatataaaaaaaaaaacatc

Function

GO: NA

KEGG:

id description
K09349 NKX5, HMX; homeobox protein Nkx-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238986 lncRNA upstream 163142 24505312 ~ 24506076 (+) False LOC113527444
TU239003 lncRNA upstream 186776 24480257 ~ 24482442 (+) True G202007
TU238813 lncRNA upstream 330488 24338134 ~ 24338730 (+) True G201844
TU238812 lncRNA upstream 331150 24337024 ~ 24338068 (+) True G201843
TU238736 lncRNA upstream 432439 24235503 ~ 24236779 (+) True G201782
TU239131 lncRNA downstream 1106 24675682 ~ 24676158 (+) True G202115
XR_003402885.2 lncRNA downstream 114744 24789320 ~ 24790813 (+) False LOC113527734
TU239184 lncRNA downstream 114766 24789342 ~ 24791405 (+) True LOC113527734
XR_004579280.1 lncRNA downstream 115322 24789898 ~ 24790813 (+) False LOC113527734
XR_004579278.1 lncRNA downstream 141905 24816481 ~ 24818352 (+) True LOC117598647
XM_026915789.2 mRNA upstream 2610 24661044 ~ 24666608 (+) True LOC113527710
XM_026914653.2 mRNA upstream 79385 24539290 ~ 24589833 (+) True cpxm2
XM_026915268.2 mRNA upstream 163248 24455659 ~ 24505970 (+) False LOC113527444
XM_034309056.1 mRNA downstream 2608 24677184 ~ 24685154 (+) True bub3
XM_026915787.2 mRNA downstream 2608 24677184 ~ 24682775 (+) False bub3
XM_026915509.2 mRNA downstream 186840 24861416 ~ 24864681 (+) True LOC113527566
XM_026914853.2 mRNA downstream 324374 24998950 ~ 25003270 (+) True lrit1b
XM_026915511.2 mRNA downstream 333272 25007848 ~ 25013291 (+) True lrit2
TU239119 other upstream 3693 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 286931 24381787 ~ 24382287 (+) True G201962
TU238026 other upstream 1270558 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 1339647 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 1462839 23205666 ~ 23206379 (+) True G201154
TU239415 other downstream 654633 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 823139 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 823604 25498180 ~ 25502628 (+) True G202374

Expression Profile