RNA id: XR_004579324.1


Basic Information

Item Value
RNA id XR_004579324.1
length 2279
RNA type misc_RNA
GC content 0.53
exon number 5
gene id LOC113527713
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 19526642 ~ 19566684 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacagcctctcagAGAGTGCGGCGTTGCAGCCACAAGATGAATCCCTTGCACATGCCGTCGCTAAGAGCCGGACTTCTGCGCTGCATCCTGTCCCTTTTGCGAATGTGCATGAGTGCGactgtgggggtgtgtgtgtgtgagtgtgagtgactACGGCTCACACAGGCACAACGGCATATCAGACTGGAGTCGAAGACTATTCTGTGTTTGGAATCTCTGTCTTTGTGGATGTGTAAGGGTGGAAATGAAGTGACAAACGAGCGACGTGCGTCCTCTGCGCGACTCGCAGCATGGCAGCCCCTCTTACGTCTCTCCCATGCGTTCGTCTGCCCTTTCTTGTCTCCTCTTGTGCTCCATCTGTCCGAAGCCTGCTGCACTGAAAGAGttagagcaagagagagagagagagggagggagagagagagagagagagagaggggacatGCGCTGGCCAGAGCGGCGCTCTCTGCCTCAGCTCCTTCACTGACCCGCATCTGGAGGAACCATGGTGAGCAAAGAGGTTGGTAAATGCATGCTCACCAACTCTGAATCAGACTCTGAGGCAGCACCCTCTATGGCCCTGGAGGTGAAAAGACCGCCGGATGGGAGTCGGCAGGTTCGCAAGCGCAACAAAGCCTTGCAGGTACGCTTCAAGGACATCTGTGAGGCCCAGAGTGAGCAAGCAGCTGCGGCACAGGGAGCGAAGCCCGTCTCATATAAAGTGGCATATCGCAAGTACATGACCGTTCCAGCCCGCAGATCCATACCCAATGTGACAAAAAGCACTGGAGTGCAGACCTCTCCGGACCTGAGGAAGCGCTACCAGACTTTCCCACTGGAGAGGAAAAAGGGTCAAAGTGTGAAACATGCGGCTACAGCGGAGAGCTATAAGGACCAGGATAATGGATTTGTTATTGATGTTAAGAGGGCCAAAGCAGCTGAGGGGGGAAGGGAAGAGACATCATCTCACACCGTACAAAAGACCAAAGCTTTGATGCACACTAATGAGTGCATAGCCACCATAGAGCACCACTCACATGCTGCAGAATGTACAGACAGGACACTGTTGCCCTGTCCCTCAGAGGACCAATCAAATTACCAGATCTGTACGGTGAAGAGCAAACATCGAAAGAGCTTCCAAAGGGACTCAGAGTCATTGGACCGCTCAGGAAAATGGCAAATAATAAATTCTGAGGACAGAGATGGCAGTACACTGCCAAACTCTAGCTCCAAAGTGACAAGCCCCATAGCCTGGAACTCCTTAACGCAGGTGGAGTGTCTGGAGAGCCCGACGGCACGCAGCAAGCGCAAAAAGGTCCTGCAGCTAAATGGCCTGCAATCACAGACACTGCCGAGGACTGGCTGCACCACACAAGTGCAGTGCCATGCTGGAATGATCTCTGCTCGGCCCATACAGGCAATGGAGGAAGCAGCAGCGGCATCGGTTGCTGCTGCACCTGCTGCTGTTCTACCACCCTCATGTGAGGCTGGGACAGGAACAGTACAAGGCACAGGGAATCTACAGGTGGATAGCGAGGCTTGCAAGCAGATAGTGCCTGTGAATCAGGATAAGGATGTAAAAGCACAGTTGCAAGCCATGGAGAACATGATCAGCTCCAGTCAGGAAACCATCAAAGTCCTGCTGGGAGTCATTCAGGAGCTGGAGAAAGGAGAGGCTCTCAGAGAAGGTCTCTCCTATCGGACCGGGCAGGACACGGCCAACTGCGACACATGCCGGAACAGCGCATGCATTATTTACAGtgtggagcTGGACTTTAAGCAGCAGGAGGACAAGCTGCAGCCGCTGATGAGGAGGTTGTGCTCAGTGGAGGACCCGTCCTTCCCCTCTCTGCCTTACCCTCAGGAGGCCTACACCTCCACTCCCAAACGCAAGGCCAAAGCCGAGGCCAAGAAACACACGCGTTGGAAACTGTGGTTCCTCTGAACACAGCGCTCGGCAGGACATGCGCACATGTTTCTACATTGTCCCTGTCTTCATCTTTCTCCGTTCCTGCCCTGTGTCTTTTTACACTTTCATCATTCTATCACcacagaaaaatggaaaaaaaggtgGATCCTGAACACTGAACCTGGCTAGCGCCTgcttcaaattaaaaatgaagtcTCCTGGGAACTGGATTCTGGGAAGCAGAATATTTTGGGCAATTGTGCCCAGAGTGTGAAACGGCTCTATTTGCAATTCAGCGAGACACAGCACAAgacaaatgagaaaataaaatgcataaatctgAATGAGATGCCTGACAAGGAGGAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235663 lncRNA upstream 100047 19426380 ~ 19426595 (+) True G199051
XR_003402870.2 lncRNA upstream 211827 19309483 ~ 19314815 (+) True LOC113527366
TU235481 lncRNA upstream 702081 18823633 ~ 18824561 (+) True G198901
TU235464 lncRNA upstream 757952 18768393 ~ 18768690 (+) True G198886
TU235453 lncRNA upstream 822943 18703475 ~ 18703699 (+) True G198876
TU235786 lncRNA downstream 225950 19792634 ~ 19856480 (+) True G199161
TU235814 lncRNA downstream 310057 19876741 ~ 19885988 (+) True G199187
TU235845 lncRNA downstream 377560 19944244 ~ 19944466 (+) True G199216
TU235846 lncRNA downstream 384103 19950787 ~ 19953308 (+) True G199217
XR_004579191.1 lncRNA downstream 668131 20234815 ~ 20251474 (+) False LOC113527335
XM_026914625.2 mRNA upstream 153293 19370326 ~ 19373349 (+) True LOC113527107
XM_026915562.2 mRNA upstream 605876 18827636 ~ 18920766 (+) True ebf3a
XM_034309466.1 mRNA upstream 605876 18827637 ~ 18920766 (+) False ebf3a
XM_026915574.2 mRNA upstream 605876 18827639 ~ 18920766 (+) False ebf3a
XM_026915575.2 mRNA upstream 605876 18827639 ~ 18920766 (+) False ebf3a
XM_026915899.2 mRNA downstream 127714 19694398 ~ 19719754 (+) True c12h10orf90
XM_026915900.2 mRNA downstream 127714 19694398 ~ 19719754 (+) False c12h10orf90
XM_026915906.2 mRNA downstream 160987 19727671 ~ 19825878 (+) True LOC113527774
XM_034309274.1 mRNA downstream 263918 19830602 ~ 19841026 (+) False dhx32a
XM_026914965.2 mRNA downstream 263923 19830607 ~ 19841026 (+) True dhx32a
XR_004579138.1 other upstream 714380 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 715130 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 1016483 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 1368013 18155151 ~ 18158629 (+) False pde6gb
trnai-uau_6 other upstream 1949266 17577283 ~ 17577376 (+) True trnai-uau_6
TU237322 other downstream 2436140 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 2441827 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 3231497 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 3638982 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 3757389 23324073 ~ 23329571 (+) True G201214

Expression Profile