RNA id: XM_034309645.1


Basic Information

Item Value
RNA id XM_034309645.1
length 6690
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC113527719
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4550108 ~ 4558134 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGTATGCTcgctttccttctttttatttgtcCGTGGATCTCTACCTTactcttcactttttttttgtattttgttaaacaGGTGGCTCTGTATGGATTTCTGAATGATCATCTCTGGAAACTTTAGCTCATGTATTTGTTGAAACATGGAACATGGAAACCCAGTCAAAAGGAAAATCATGAGGTAGTGGTGAAATACTGGTGATGGCCACGTAGGATGTTACAGACATCAGACTGAAGTACGTGGATTATACATTCACCATGAGCTGCCTGGAGAAACAGCATGTGAGCCAAAAAGCAAGCATGCAGCACCCTTCCAACCTGGATAGCTTTATGGATGAGACAGACCGAGAGGTTATGAACCTTACAGACCGGGCCTTTAAGAGTCTGTGCATCGGTGATGAGGCAATCTACAATGACTCAGAACTTTTACCATCTCCAGTAGACTGTCACAAGCCACTAGCTGAAGAGATACCAAAAAAGCCTCGAGAAAACTCTGCCTTGGATGTTAAGAAGCATGGAGCTCACTGGCCCAATGGCATGTACAACACACcatggcaaataaataaaaacaaatcaaaggTGTCATCACTTTTTTCCGCATTTGCAGCTAAGAAAAACAGtgacacaaaaatgacaaacgGGGACTCATGGGACAAATCAGCACTGCTTAGCATCCAAACGGAGCTATCAGAGTTTTCTTCAGATTATCAAAACCACCTCATGGATGAACACATTTACCAGGTCAAGAATCATCGTAAGCCCTCTGAGAAAGGGACTGTTAATAAATCAATCCAGGATACATATAACTCATCAGGAAAATCATCTAAAAATCAACACAGCAAATCCACTAAGCTGAGAAAACTGAATTCCAAAAACTTTTTCCTTCACAGTGAATTCAGCCCATTCCAGTCCTGGGGAGACTTAAATAGGTTTGGACTGGAGAACATGGAGATGTTTCCATGCAATAGCCCAGCTGGATTGTATGATTCCCCACTTTACAGAGAACTGAACAATTCAAACAGATTACATGTACCACAGCCAAATAAAAGAGAGACAAGCCAAAGCACCTCACCTCTGGAACCTCAGCATAAATCTAAACCAGATTTATCACAGTGCACAGCACAGACTTCGAAAACTGTACCTCCAGTATCAGAAAAACATTCTGAGCTAAAGCTCCTGAAACTGCCTGACCTTCAAATTGAGACTCTTCAGCCACAAGTGCTGCAGACGTCCTTTGGATCATTTCAGAGGTGTCAGTCTGAAGGAGACCTTTATGCTCCTTGGAGGAAAAGTCGAAGCAGGGCAAAAGGTGTTGTTCAGCCACTTGTCAGCTCACCTGGCTGTGAAAGGTTTAACACTGGAGAGGAGGgtgcaatgcaaaataaaaaggagGTTAGAACAGTGGAAGAAGCAACCTGCTTAAATCCAACTCCATTCAGTATTTCACAGCTGTTGACTCCAGTCATACCCTCCAGACAAGGTACAGGAAACTCAGAGATACTGCAGTCTGTTCACTCGCCCGTAGCCCTTGATTTCCCAGCACTCCATGAGACAGAGATTCGTCCATCACCTGAGATCAAACGAGAAGGATACAAATCCAAGGCATCAAGTCTCTTGTTTAATCTCAAGGACAACAGAAAACGGGTCAAGGCAACATACAGCCCACCAAAGTTTAAAGGTTTAGATGCAGCAGACCAAAATAAACTATCTCCTCTGATTGAACAGGATGTTACCAAAAATGTTCTGGAGAGTCCAGAAATCACAGATTCTAAAACCATATCGACTGTTCAAAAAACCATTAACTATCCAATGAGTCCTGCAACTGCAGACGTACAGAGCTCTCAATCCAGCGGTCATATAAATAGCACTTTGCCAGATGACTTTTTGGGACTTAGTCTACTGCAAGCTGGAAATAGAGGCTCACCTATTAAACCTTTGAAATCAAAAAAGAACTCTTTGGCCAAAGCTACATATCCATCGTTAAATTTGTACCGGAAATCTAGTCCAGTAGAATTGAACACTAAAACCATGCCAATGGATGTTCCTGGTTCTCATTctatagtaaataaaagtgcTGAACAGAAGTTGAGCAAAGAACATTTGCCAGAGAAGGATAGTAAGGAACTGcaaagaaaatgtcatttgaCTAAACCtgaaataaacaatgcaaaccATGAATATACCCACCTGAATGTTGGGACTGCAGACAAGGTACTGACTCAGAAAACAGATGCTGTAGCTCTGaaggaaaaatattttcctACAGTTTTAAAGAAGCACAATCCGCAACAAGACGCCCCGACAGTTTCAGGTAGTAGAAATCAAGAAAAATTGAATACAGGAGGAATATGTAAGGCAGAAGAAAGACCTTTTAGATATAACGAATGTCaaagtaaagaaacaaaaactaagcatttattttctgcaaGACAGAACAACTACATCAAAAATCAAAGATATGTGAATGTAGATGAGAATTATGATGATGGCGATGAATGTGAATATTGGCAAGAGAATGTAATTTCTGCAGGAAGAGATGAGCTGAGAAAGAGGGAATTGAATGTAGATGTGCATAAAGATAAAGTACAGGAAAATATGGATGCTCCACTTATAAAAGAAAGTGTAACAAATGATGCCtctacaaaaaataattataacgTACCCTTGAAGAATGACCTGGGTATATGCACTGAAAAAGGAGTATCCAAAAATGCTTTTTCTATGAAAGGAAACACGTCAGCAAAAATAGCACTGTTCACTTTAAAGGAACAGTCCTCAAATACAGTCCCAGGCTCAAAGAAAAAGAACATAGTAAAGGATAAGTATGAGCTAGCCACAATGGCTTTGGAGAAAAGTAATGCTGAGAAAGAACGGAGACAAAAGCAAAGTGATAGGGAAAATGGACAGGATTTACCCATGAAAAGAGACAATCAAGAGAATATGCTAGCATTGGGCCagaaggaaacaggaagtgttatACCAGACAGACGAGGTCACAAGGCCATTTCTGATTTTACACCAACTAGCCAAAATGTTGGATGCATGTCAGACATAGACACCAATTATGGTGAATGTCATGTGCCTGAGGTAAAATTAGCTGAACCTTATAAGCAGGAAGGTGCTGCAAAGCACAGCCCAAGTAGACTGATATATTCAGACAGGGACAGATCTGACAGACATGGTCAACAAGGTGACACAAGCAATATCAAGTCAATGGCTAATGTAACTGAACTTAAAGAAACAGTGTCCACGCCTAAAAATATAAGCCTCGGTCAAGAAAGTTCAGTAGTCCAGGACTATATTGACAATAAGCTTGTTAGTGCTGGTGAAGATGAGTCATCTATTCAGAAAAAGAAGAGCTCTTACAAACCCGAGGCTCCTCCTAGACGAGAAGGAGCAAATTCCCAAAGTGAAGACAGAGCAATTaatgaaagacaaagaaaggaaGATTTAGGGAGTGTTGAGAGATCAGTGAATCATGACGAATGTTTAAGCACTGAAGTGCAGAAAGCTAATCTACCAAAGGATAAAGGACCAGTAATCGGCCATGTATCATCACTTATGGAAAAATTCAACAGAGAACAAGTAGTGCCAAGTTTAAATGTCCAAGAATATTTGCATCAAGGAGATGGTCTCATGGTCCACCCCAGAAATGacttattaaaacaaaaagcaatttCACCAAAGGATATAATGGGTTTGACTGAAGGTGAAGAAATTTTAACAGAACATAATCATACAGAAAGAGAGGCATATTCAGACAGCAAGAAAGTACCTGACAACAATTCAAAACTAGCCATGGGAAATGAAGAAAATCTAGGTGGAGAAATTGCTGATAAACAGGCCATTCAAACTGGTAATAAAGATGCCACAAGAAatgaaaaggacaaaaaagatGTGACTAAACCAGAGAATGAAAGTGCTTCTGACGTTTTGAGAAAAACAGGCAACCAGACCAAATCCAAATGTCATGGTGAAAGCAAGGAGTATTTATCTGACCATTTTGGGAACACTGATGAACCTGATGATGAATCTGAGAGGAAACCAACCTTGAATTTGTTAAATGCTGATAATGCTCCAATGGATAGGATAACCCTTTACGATATTCTTAATCAAGCTGAACCTTCATCATTGGTAGATGTTAAACCATTAGAACAAAGCAATCTACCTTCCAAACTATCAGAGGACTCAtccttttcacacaaaacagaagACTTACCATCTTTGAATAATggtgaagaaagaaaatgtgagaATTTAGACACAATGGATTCCTGTTCCAATAGCAACCCTGAAAGTAAACTGCATAACTCAGACATGGCAGTTCCTCCTCCACAAGATGTGGAAAAAGGAGGGTGGGTGCGCTGTTTGATAGACTCAGCTCACAATCTAACACCAACATGCCAGTCCAATGCCTCTTCTCCCACACTGGGAAAACCTgctttatttaaagtgaaagaCAACACATTCAGTGCATCCCCTGTTACCAAAACAGTAAGACCCATACTCCATAAAACTGTTGCAGGAGTTACACAGCCATGGTCGCCTAGAGAAAGCTTAAGTGGGTCTGAACGGGGTGAAGAAGATCCAGACATTTTCAAGGACATTGTAGACATGCAATGTTTGCCTTCCACACCTGTCCGAATCACCCAGCCAAACCAGTCATCAATACAGGTTGTACCCCATCCATCCTCTCAATCCACCACAGTCCGGGACAGAAAAGGACTGATGGATACTTCTACAGTGCTAGAAGAAGAGGAGTGGCAATTGGCTAAAACCTTAGTTTCAGAGGGAAGAGAAAACTGTGAAATGAGTGCAGAAGACACTGTGGAGGAGCTTGCATTCTACACTGCACCTACAGACAGCATAGAGGGATCAAAGGCACCAAGTGACAGATCTGAATCAGCCTGTAGTGGCATTGAAAATCAGCTTCAGGGCAAGCCACCTGTTGTCCCTCCAAAAACAGAGAAAGCGCTGCGTCGTGCTATGAAGCTGACCACAAAGAGGATCCAGAAAGCAGAAGCTAAAAGTAAATCAGAGCGTGGCCGGAGCAGTGAGAAGGGTTCCTGTCAGAAACGTGAGAGGAGGCACCAGAGTAGTGACAAAGTTCTCAGTGACAGGTCACACCAACGAGAACATAGTATTGACAGAGGTAGCAGCAATCAAAGCACTGGGGAAAGCAGCAGTGAGAGGTCGCTGGCAAAGAGCCACACAAGTGAAAGACATGCCACACATCATAGTAAACCAAACAGCCATAGGAAGGAGAAAGATACTGGAAGGAAACTACAGCATGGATGTCAAAGCAGTCTAATCAATATGGATGGTGATGCAAAGAGCTGTGTGgctgaaaagcaaaaagaaaatcaatcacAACACAAAAATCAGTTTGATACCCAGAATATAAATGTTGACTGTGAGAGATTGGGACGTACTAGTGAGAAATACCTACCACATAAGCTGTACCGCAGGGCTCATAGTTTGGACAGATTTTCAAGTGGCAAACATGAGCATAGGTTACTTAGCGCTGAAGATCCTGTCTCTAAAACCAATACGGAGGCGTTAAAGAAGCTTGCCACTGCACAGACAGCACCTTTGCGACGAAACAGCATTGAACATACTTATGGCTCTCCAACAAATAACATTGTACCACAGTCTTTCCCAATGACCCAGAGGAAGCTTCTGCAAGATCTTGATTCTGGACAGTACTTTGTGGTGGACATGCCTGTGCAGGTCAAGACGAAAACCTTCTTTGATCCAGAGACAGGAAGTTACGTCCAACTGCCGGTTCAGTCACTTGAAGGGTCTGTACCACGGGCACAATCTGTAGAAGTTGTGAACGCACCTCCACTTATGCTATATCATGGCTTTGTTCCAGTGCCTGTCTCATCTTTACCATAACCGAAATCCACTGTTAAAGCAAGCTCTGTTGTTGCCCCTGCTTACTTGAACTTATTTCAAGCCAGTGAGATAGAAATGCATGATGACCTTTATGAAAAGCACAAAAGAGAGCGTCATCCCTACCCATGAGCTGTGCGTGTATTAAAAGAGCACTTTTGATTAAACATAATCAGAATTTGTTAAAATAGATGAAGATAAATGTAATTACCTTATAGACCAATAAATGGTCTTGGAGTTAAGTGAGTCTGAATTCAGGCACTAGTATTTTTGTCCTAGATGAATATACATGTTTTATACATGTTTTGCGCCTAGCTCTAAAATACTCTagtttccttctttcctttggTATTGGCCTTTGGTATTTTCTAATGTATTTTGTGATGTTTGATTGGGTTATTATGTTATTACAAGAATGTCTAAAAATAGTGCTTTTCCCAGTGATTATTGcaagtgtatttaaaaaaaatataacaatgtTCACATTCTTTGCCATATTTACTGTTGCGGATGACAAAATGCACTGATTAAATAGAGAAGAGTGAAAGTAGTGGCTGTATGTCTTAAATGGCATATTTAAAGGTTAAGTTGGACATTAATTATGTATTTGgtgtatttatgtaatattttgtgtattttgaaatgattgattgatttcaTGAGGCTGTGTTGCTGGCTTCATAAAATGTAAACCATTCCAATAAAACTCTCAACAAATGTCTAACATTTCATATTAAGTAAGAATGGTCAGCTTTAAGTGACTGGTCTAAATAAACCCCTGTTTAGATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225794 lncRNA downstream 261305 4288417 ~ 4288803 (-) True G190742
TU225783 lncRNA downstream 291354 4254493 ~ 4258754 (-) True G190731
TU225706 lncRNA downstream 389101 4159776 ~ 4161007 (-) True G190656
TU225612 lncRNA downstream 512768 4036651 ~ 4037340 (-) True G190563
TU225525 lncRNA downstream 624878 3920191 ~ 3925230 (-) True G190490
TU225878 lncRNA upstream 15754 4573682 ~ 4575530 (-) True G190821
TU225890 lncRNA upstream 38611 4596539 ~ 4596823 (-) True G190829
TU225914 lncRNA upstream 108384 4666312 ~ 4666571 (-) True G190849
TU225963 lncRNA upstream 143176 4701104 ~ 4750877 (-) True G190885
TU226166 lncRNA upstream 353806 4911734 ~ 4918977 (-) True trnap-cgg_3
XM_026915800.2 mRNA downstream 254868 4291951 ~ 4295240 (-) True sox9a
XM_026915506.2 mRNA downstream 533795 4013847 ~ 4016313 (-) True LOC113527563
XM_026914513.2 mRNA downstream 545231 4000449 ~ 4004877 (-) True sstr2a
XM_034309403.1 mRNA downstream 578223 3938282 ~ 3971885 (-) True heatr1
XM_026935101.2 mRNA downstream 614970 3930440 ~ 3935138 (-) True arg1
XM_026915146.2 mRNA upstream 67670 4625598 ~ 4648676 (-) True mapk8b
XM_026915203.2 mRNA upstream 212616 4770544 ~ 4787576 (-) False ubtd1b
XM_026915202.2 mRNA upstream 212616 4770544 ~ 4787576 (-) False ubtd1b
XM_034309184.1 mRNA upstream 212616 4770544 ~ 4787576 (-) True ubtd1b
XM_034309628.1 mRNA upstream 252724 4810652 ~ 4827352 (-) False zdhhc16b
TU224811 other downstream 1694615 2852055 ~ 2855493 (-) True ndufa4
TU224780 other downstream 1735528 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other downstream 1744202 2800076 ~ 2805906 (-) False LOC113547504
XR_003404831.2 other downstream 2339129 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 2979035 1568286 ~ 1571073 (-) True G189199
trnap-cgg_2 other upstream 340846 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 342038 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 343208 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 344400 4902328 ~ 4902399 (-) True trnap-ugg_4
trnap-ugg_5 other upstream 345693 4903621 ~ 4903691 (-) True trnap-ugg_5

Expression Profile