RNA id: XM_026915800.2


Basic Information

Item Value
RNA id XM_026915800.2
length 2684
RNA type mRNA
GC content 0.50
exon number 3
gene id sox9a
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4291951 ~ 4295240 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAATCTCCTCGACCCCTACCTCAAGATGACGGACGAGCAAGAGAAGGGCCTATCGGACGCACCGAGTCCGAGCATGTCCGAGGATTCGGCGGGGTCTCCGTGTCCGTCTGCCTCCGGCTCGGGCTCGTGCTCGGACGTGGAGAGCGCCGGTGGGCGCGCGCGCGACAGCGGCGGCGAGCTGAAAAAGGACGTGGACGACGAGCACGAGAACAACGAGAAGTTCCCGCAGTGCATCCGCGAGGCCGTGTCGCAGGTGCTCAAGGGCTACGACTGGACGCTCGTGCCCGTACCGGTGCGCGTGCACGGCGCCAGCAAAAACAAGCCGCACGTGAAAAGGCCCATGAACGCGTTCATGGTGTGGGCGCAGGCCGCGCGCCGCAAACTCGCAGATCAGTATCCTCATCTGCACAACGCCGAGCTGAGCAAGACCCTGGGCAAGTTATGGAGATTGCTGAACGACGTGGAGAAGCGTCCATTCGTGGAAGAGGCTGAGCGCCTGCGTGTGCAACACAAGAAGGATCACCCTGACTACAAGTACCAGCCACGGCGAAGGAAATCAGCCAAGAATGGTCAGGGCGAGGGGGAAGAGGGTGCGGAGCACACACACGTCTCCACCAACGCCATCTTCAAGGCCCTGCAGCAGGCCGACTCTCCAGCATCCAGCATGGGAGAGGTGCACTCCCCCAGCGAGCAGTCAGGCCAGTCCCAGGGTCCCCCGACTCCGCCCACCACCCCCAAAATTGACGCTCAGGCAGGCAAAAGTGAGCCAAAGCGCGAGGGCCGCCCGCTCCAGGATGGCATCGGAGTTACTGTTGGCTCTGGCGGGCAGCGTCAGCTTAACATCGACTTCCGCGACGTGGACCTGGGTGAACTGAGCAGCGACGTCATCTCACACATGGAGAGCTTTGACGTGGCCGAGTTTGACCAGTACCTGCCACCTAACGGGCACCCCGGGCATGGCTGGATGGGTTCAGCGGGCACCGGTTGGATGGCCAAGAGCCCGAGCTCCAGCCCTCAGGTGGGTGCTGCCAGCCCTGGTGAGGATCAGAGCCAGCAGAGGACAGCGCACATCAAAACCGAGCAGCTGAGTCCCAGCCATTACGGCTCCTTTAACCTGCAGCACTACACCACTTCCACTTCATCCTCTGCCTTCCCATCATGCATCAGCCGGCCGCAGTACGACTACACCGACCAGCAAGGCGGCGCGACGTCCTATTACTCAACAGGCCAGAGCTCGATTTATTCCACCTTTAACTACATGAGTCCCAGCCAGAGGCCCATGTACACCCCCATCACCGAGACCCAATCAGGCCACAGCCCCCAGCACTGGGACCAGCAGCCTGTCTACACACAGCTCTCCAGACCCTgagaacgcacacacacacacgcacacacaggcacacacacgcacgcacagatATGTACCCATGCAGTGAAGATTATTTAACAAGGCTGATGGCCCCACATAGCGGCCCTCCATCACTCTTCCTGTAAAGCACACACTTGAATACTCGCCAGAGGAAGACTGGAAGGAAAGCTGGTCTTTAAAAAAGAGCAGCTCACGACGTGCCTTTTTCATCTTTAAATCGCCTGATGCCaattagatatatatttttagcttTGATTGCGAGAAAAGAGAAACGTTTTTCTGCGAAAAGAAGAATCCTCTGTGAGGacttaattaattattgtaCTTTAGTATGTACTGTGTATGTTTTCTTATCTTTTCCATAGCTGATAGGGATTTTATTCTGTAGGGAAACggtttattttttactaaacCACTCTTAGCAGTCCTGCCTAGTCATCCTCATGGCATTTTCTTATCGGCCTCTAGGATTCTGTTTGCTGCGCTAGTGGATCTTCATGCCGTTGCATCCTACATTCAATTCACTTTGGttatttcttgtatttatgattattaaaaatgttcctGATGCTTTAGAGTggtgtatttttaatgtttttgtatgaCATGTCTGCCTTGTGCACCATCAGTGCCTGgtcttgtggggtttttttgtcaAGGTAGAATGTGCAGCTGAGAATTTACTTAGTGCCTGACAGTGGCAGgaagtgacctttgaccccatgTCATTATTTCCAGTCAACAGTTGTACTGGTCTCATCTTTCCACCCTGACTCCCTTTTTTCTGTTCAGTCTTAACCtcttctaatttatttattagtcttaattttatttcagattaattAAGTGCAGCGTATTCATTAATACTGTAAGCAACTAATTATTTTGTCTTTGGAAGTTACCCTTCTGGATATTGTAATGTTTAATCCAAGTCATTAAACCGGAAGGGTTGCTACTTAATATGGTACAGTTCTGTAATcatcatgtttatttatcatatcTAGATGTctctattttaaatgtttatttgtctctttttttccttcttttgtgCTAGCCAGAATTGATGATGAAGTACTGTCAAGGCTGATCGAACTGGAACTGTCAGCTTTCTTCCATCAGGAAGTTTTTTTGAAGCTCTGTTTGAAGCTGTAactgtctttttgtgtgtgtgattgtttatAGAGATACCAGAGATTTCACATCAAATCTTTTCAAAGATCGAATTTTCCATGCCACATATCTTATTCCTGTTGTTACATcttccaaacatttttttttctttcaccagacttaacattttctttaaataa

Function

GO:

id name namespace
GO:0043049 otic placode formation biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0060536 cartilage morphogenesis biological_process
GO:0048708 astrocyte differentiation biological_process
GO:0048709 oligodendrocyte differentiation biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225794 lncRNA downstream 3148 4288417 ~ 4288803 (-) True G190742
TU225783 lncRNA downstream 33197 4254493 ~ 4258754 (-) True G190731
TU225706 lncRNA downstream 130944 4159776 ~ 4161007 (-) True G190656
TU225612 lncRNA downstream 254611 4036651 ~ 4037340 (-) True G190563
TU225525 lncRNA downstream 366721 3920191 ~ 3925230 (-) True G190490
TU225878 lncRNA upstream 278442 4573682 ~ 4575530 (-) True G190821
TU225890 lncRNA upstream 301299 4596539 ~ 4596823 (-) True G190829
TU225914 lncRNA upstream 371072 4666312 ~ 4666571 (-) True G190849
TU225963 lncRNA upstream 405864 4701104 ~ 4750877 (-) True G190885
TU226166 lncRNA upstream 616494 4911734 ~ 4918977 (-) True trnap-cgg_3
XM_026915506.2 mRNA downstream 275638 4013847 ~ 4016313 (-) True LOC113527563
XM_026914513.2 mRNA downstream 287074 4000449 ~ 4004877 (-) True sstr2a
XM_034309403.1 mRNA downstream 320066 3938282 ~ 3971885 (-) True heatr1
XM_026935101.2 mRNA downstream 356813 3930440 ~ 3935138 (-) True arg1
XM_026934959.2 mRNA downstream 461137 3815947 ~ 3830814 (-) False LOC113539277
XM_026915799.2 mRNA upstream 254868 4550108 ~ 4558134 (-) True LOC113527719
XM_034309645.1 mRNA upstream 254868 4550108 ~ 4557928 (-) False LOC113527719
XM_026915146.2 mRNA upstream 330358 4625598 ~ 4648676 (-) True mapk8b
XM_026915203.2 mRNA upstream 475304 4770544 ~ 4787576 (-) False ubtd1b
XM_026915202.2 mRNA upstream 475304 4770544 ~ 4787576 (-) False ubtd1b
TU224811 other downstream 1436458 2852055 ~ 2855493 (-) True ndufa4
TU224780 other downstream 1477371 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other downstream 1486045 2800076 ~ 2805906 (-) False LOC113547504
XR_003404831.2 other downstream 2080972 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 2720878 1568286 ~ 1571073 (-) True G189199
trnap-cgg_2 other upstream 603534 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 604726 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 605896 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 607088 4902328 ~ 4902399 (-) True trnap-ugg_4
trnap-ugg_5 other upstream 608381 4903621 ~ 4903691 (-) True trnap-ugg_5

Expression Profile