RNA id: XM_026915804.2


Basic Information

Item Value
RNA id XM_026915804.2
length 2576
RNA type mRNA
GC content 0.52
exon number 20
gene id zgc:165653
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 20258874 ~ 20288139 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAAGGGCGCGTGAGGGGCACACAGAGGCGGCGGGACGACACACGACTTAGACACAAGTTTGAACGTGTAGCATCGGACAGCCGGGAATCAGGCATTTAATTCTTCATAGGCCCGGGTTTGTGTGAGCAGACGCAATCcaatgatgatgacgacgatggTGACGATGAAACAAACGGAGACGCATTACAACAACGGCTACGTGCAGGACGAGTACATGCTGCAGGAGGATGAGTGGGACCGCGACCTGCTGCTCGACCCCGCCTGGGAGAAACAACAGCGCAAGACTTTCACTGCATGGTGCAACTCACACCTGCGTAAGGCTGGGACTCAGATTGAGAACATAGAGGAGGATTTTCGTAATGGACTCAAGTTGATGCTCCTTCTGGAAGTCATCTCTGGTGAAAGGCTGCCTAAACCAGACAGAGGAAAAATGCGATTTCACAAAATAGCCAATGTGAACAAAGCCCTGGAGTACATCACCAGTAAAGGGGTAAAGCTGGTGTCCATTGGAGCAGAAGaGATCGTTGATGGAAATGTAAAGATGACTTTGGGAATGATCTGGACCATTATCCTCCGCTTCGCCATCCAGGACATCTCAGTGGAAgaaacctCAGCTAAAGAGGGTCTGCTGCTGTGGTGCCAGCGGAAGACTGCTCCTTACAGGAACGTCAACGTCCAGAACTTCCACTGCAGCTGGAAGGATGGCCTGGCCTTCTGCGCCcttatacacagacacagacccgaTCTGATTGACTACTCCAAACTCAGCAAGGATGATCATCTAGGCAACCTGAACCTGGCTCTGGAAATTGCAGAGAAACACCTTGACATCCCAAAAATGCTGGATGCAGAAGACATCATCAACACCCCCAAACCTGATGAGAGAGCCATCATGACCTATGTGTCCTGCTTCTACCATGCTTTTGCTGGAGCCGAGCAGGCGGAGACTGCTGCTAACAGGATTTGTAAAGTTCTTGGGGTCAACCAGGAGAATGAGAAACTCATGGAAGACTATGAGAAACTGGCCAGtgagCTGCTTGATTGGATCCGCCGCACCACCCCATGGCTGGAGAACCGCTCTCCCGAGACCACTATGGCGgccatgaggaagaaacttgaAGATTTCCGTGACTATCGTCGCATTCACAAGCCGCCAAAAGTGCAAGAGAAATGTCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAACTGCGTATCAGCAACAGGCCTGCCTACATGCCCTCTGAGGGGAAAATGGTGTCGGACATTACGAGTGCATGGCAGGGTCTGGAGCAGGCAGAGAAAGGCTATGAAGAGTGGTTGCTGAATGAAATTCGACGCCTGGAGCGTCTTGACCACCTGGCTCAGAAATTCCAGCAGAAGGCGTCCACCCATGAGAGCTGGGCTaaaggTAAGGACGAGCTCCTGACTCTGAAGGACTACGAGCGGGCCTCTCTGACCGAGGTGCGGGCGCTGCTCAGGAGGCATGAGGCATTCGAGAGCGACCTTGCCGCACATCAGGACCGAGTGGAGCAGATCGCAGCCATCGCACAGGAACTCAAtgaACTGGACTACCATGCTGCAGCAGCCATTAACGAGCGCTGTCAGCAGATGTGTGATCAGTGGGACCAGCTGGGAACTCTGACTCAGAAACGGAGAGAGGCCCTGgagagGACAGAGAAGTTGCTGGAGACAATTGATCAGCTCTTCCTGGAGTTTGCTAAAAGATCTGCTCCGTTTAATAACTGGATGGAGGGAGCCATGGAGGATCTGCAAGACATGTTCATAGTGCACAGCATAGAGGAGATAGAGAACCTGATTTCGGCCCATGACCAGTTCAAAGCGACGCTGCCCGAGGCAGATGTGGAGAGACAGGCCATCCTGAGCATCTACAACGAGGTGCAGAAAATCTCCCAGACTTACAACATCAATCCCAACCTCACCAACATATACTGCACCATCACCCCGACTGAGATCAACCTCAAATGGGacaaggtgaAAACGCTGGTCCCTCAGAGGGATACTGCGTTACGGGATGAGTTATCCAGGCAGCAAATGAACGAGCGCCTCAGAAGGCAGTTTGCGGCCCAGGCCAACGCGATCGGACCCTGGATACAGGCGCGCATGGAGgagaTTGCAAGCTGCTCTGTGGATGCAGGCGGCACTTTGGAGGATCAGATGAATCAGCTGAAGCAGTGTGAGGGTATGATCATCAACTACAAGCCCAACATCGACAAGCTGGAGGGAGATCACCAGTTTATCCAGGAGTCACTCATATTTGACAACAAACACACCAACTACACCATGGAGCATATTCGTGTTGGATGGGAGCACCTCCTGACGACTGTGGCTCGCACCATCAATGAGATCGAGACTCAGATCCTGACCCGCGACGCCAAGGGCATCAGTCAGCAACAGCTCACCGAGTTTCGCTCATCCTTCAGACACTTTGACAGGAGTAACCTTGGGCAAGTTCGTTCCACTGATTAAAAGCTTGTCTGAACCTAACAGGAAACACTATAGGAGAAGAAGAAAGGAGGAATGGACACAGATGAATTCCGTGCATGTCTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579191.1 lncRNA upstream 7400 20234815 ~ 20251474 (+) False LOC113527335
TU236496 lncRNA downstream 309666 20595241 ~ 20595444 (+) True G199796
TU237058 lncRNA downstream 1098501 21384076 ~ 21386033 (+) True G200325
TU237068 lncRNA downstream 1171844 21457419 ~ 21457764 (+) False si:ch211-216b21.2
TU237153 lncRNA downstream 1324679 21610254 ~ 21610457 (+) True G200418
TU237157 lncRNA downstream 1354119 21639694 ~ 21643654 (+) True G200420
XM_026915022.2 mRNA upstream 29877 20202594 ~ 20228997 (+) True LOC113527333
XM_026915810.2 mRNA upstream 58602 20186824 ~ 20200272 (+) True LOC113527727
XM_034309636.1 mRNA upstream 58744 20186805 ~ 20200130 (+) False LOC113527727
XM_034309635.1 mRNA upstream 58744 20186826 ~ 20200130 (+) False LOC113527727
XM_026915770.2 mRNA upstream 241370 20012707 ~ 20017504 (+) True gpx9
XM_026915459.2 mRNA downstream 5018 20290593 ~ 20316556 (+) True mtr
XM_026915117.2 mRNA downstream 33714 20319289 ~ 20500533 (+) True ryr2a
XM_026915119.2 mRNA downstream 33714 20319289 ~ 20500533 (+) False ryr2a
XM_026915118.2 mRNA downstream 33714 20319289 ~ 20500533 (+) False ryr2a
XM_026915124.2 mRNA downstream 33714 20319289 ~ 20500533 (+) False ryr2a
XR_004579324.1 other upstream 692190 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 1446612 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 1447362 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 1748715 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 2100245 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 1717249 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 1722936 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 2512606 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 2920091 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 3038498 23324073 ~ 23329571 (+) True G201214

Expression Profile