RNA id: XM_034309635.1


Basic Information

Item Value
RNA id XM_034309635.1
length 1701
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC113527727
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 20186805 ~ 20200272 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAAAACATCGATTACAAAACGAGGTTGTTGTattgaaaaaaattgcagtACATGCATGCAAACATCTGAAGGTAGGTCAAACATCTGAAGGTAGGTCTGAAGGATGGCTGCGGTGTTATTTGAGGGTTTGAAGGTCCTGCTGTCTCGGCTGCTGTGCGCGCGCGCACTGTCTGGTgcgctcggtgtgtgtgtgctcgcgcTCCTGGTGCTTTCGCCGCACGCCTCGCGCAGCTGCTGTGGAAACGCAAGAGCCTCTCCTGCTTCAGCTGTCCTCCACAACGCAACTGGTTTCCTGGGACACATGGGCATTATTCGGTCTGATGAAATGGGTCTTCAGGAGGTGGATGAGCTGATAAGGACGTACCGTCACTCCTGTGCCTGGTTCCTCGGCCCCTTTTATAACCTTGTGCGCTTTTTTCATCCTGACTACATCAAACCTTTGCTTCTTGCCTCTgcTTCCATTACATATAAAGATGAGCTGTTCTATGGGTTTATGAGACCTTGGCTTGgacAGGGGCTTCTGATAAGTAACGGAAAACAGTGGTCTCGTCAGCGTCGTCTTCTCACTCCGGCCTTCCACTTTGACATCCTGAAAAACTACATTCATATCTTCAACAGCTCCACCAACGTCATGCATGAGAAGTGGCGCCGCTTGctggcagaaagaaagaaagactttgACATGTTTGAACACGTGAGCTTGATGACTCTCGACAGCCTCCTGAAATGCACTTTCAGCTATGACAGCAACTGCCAAGAAAAATCCAGTGAGTACATCTCTGCCATTTATGAGCTGAGCGACTTGGTGGTGAAGAGGCAGCGCTGCCTCCCTCATCACTGGGGCTGGCTGTATAAGCACACTGCAGAAGGACAGCGTTTCCATCGGGCCTGCGAAATCGTCCACAACTTCACCACCAGCGTCATACAAGAACGCCGTACCCAATTCCTCCatcagggacagacagacagcaccACACAAACAGGCACGACAGGCAAGAAGAGGAGAGCAGTTGACTTTATAGAGGTGCTGCTTCTATCAAAGGATGAGAATGGAGAAGGCCTGTCAAATGAGGAGATTAAAGCACAAGCAGACACGTTCATGTTTGCAGgTCATGACACAACAGCGAGTGCAATTTCCTGGGTTCTGTATAATCTGGCCATGCACCAGGACTATCAAGACCGCTGTCGTTCCGAGATCAATGCTCTTCTTGAAGACCACGACACTGAGGAGCTCGTCTGGGAAGACCTCAGTAACCTGCCCTTCACCACCATGTGCATTAAGGAAAGTATGAGGCTTCATCCACCTGTGATTGCTTTAACCCGATACTACTCTCAAGATATGAATGTTCCTGGGGGACGCACCGTACCAGAGGGCGCTATCTGTCTGATCAGTGTTTATGGCACCCATCATAATCCAGATGTGTGGCCTAATCCAGAGGTGTTTGACCCCATGCGATTCGACCCTGACAACCAGAAACAACGCTCCCCATATGCTTTTATTCCCTTTTCTGCTGGACCAAGGAACTGTATCGGTCAGAACTTTGCCATGGCGGAGATCCGTGTGGTTCTGGCACTCACTCTAAGAAGATTCAGGGTTCTTCCAGGGTCCAGATCTCCAAGTCGTCTTTATGTGCTCACACTGAAAGCAGAGGGGGGGCTGCTTCTAACGCTAGAACCCCTGTCACCACCTCAAcgctga

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235846 lncRNA upstream 233518 19950787 ~ 19953308 (+) True G199217
TU235845 lncRNA upstream 242360 19944244 ~ 19944466 (+) True G199216
TU235814 lncRNA upstream 300838 19876741 ~ 19885988 (+) True G199187
TU235786 lncRNA upstream 330346 19792634 ~ 19856480 (+) True G199161
TU235663 lncRNA upstream 760231 19426380 ~ 19426595 (+) True G199051
XR_004579191.1 lncRNA downstream 34685 20234815 ~ 20251474 (+) False LOC113527335
XR_003402864.2 lncRNA downstream 34686 20234816 ~ 20251474 (+) True LOC113527335
XR_003402865.2 lncRNA downstream 34686 20234816 ~ 20251474 (+) False LOC113527335
XR_004579193.1 lncRNA downstream 34687 20234817 ~ 20251474 (+) False LOC113527335
XR_004579192.1 lncRNA downstream 34688 20234818 ~ 20251474 (+) False LOC113527335
XM_026915770.2 mRNA upstream 169322 20012707 ~ 20017504 (+) True gpx9
XM_034309279.1 mRNA upstream 315423 19863312 ~ 19871403 (+) True mrpl38
XM_026914969.2 mRNA upstream 333076 19845510 ~ 19853750 (+) False wbp2
XM_026914968.2 mRNA upstream 333076 19845512 ~ 19853750 (+) True wbp2
XM_026914965.2 mRNA upstream 345800 19830607 ~ 19841026 (+) True dhx32a
XM_026915022.2 mRNA downstream 2464 20202594 ~ 20228997 (+) True LOC113527333
XM_026915803.2 mRNA downstream 58744 20258874 ~ 20288139 (+) True zgc:165653
XM_026915804.2 mRNA downstream 58744 20258874 ~ 20285575 (+) False zgc:165653
XM_026915459.2 mRNA downstream 90463 20290593 ~ 20316556 (+) True mtr
XM_026915117.2 mRNA downstream 119159 20319289 ~ 20500533 (+) True ryr2a
XR_004579324.1 other upstream 620142 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 1374564 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 1375314 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 1676667 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 2028197 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 1802694 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 1808381 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 2598051 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 3005536 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 3123943 23324073 ~ 23329571 (+) True G201214

Expression Profile