RNA id: XM_034309043.1


Basic Information

Item Value
RNA id XM_034309043.1
length 9499
RNA type mRNA
GC content 0.55
exon number 54
gene id trrap
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10417901 ~ 10487467 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAACCTCTGCACTGTTTGCAACTATCCTAGTGGAGTACCTTTTGGAGAGGCTACCTGAGATGGGTTCCAACGTGGAGCTGTCCAACCTCTACCTCAAACTCTTCAAACTTGTGTTtggctctgtttctctctttgctGCAGAGAATGAGCAGATGCTTAAGCCCATCTCCATAAGATTGTGAATAGCTCCATGGAACTTGCCCAGTCAGCCAAAGAGCCATACAACTACTTCCTGTTGCTCAGGGCTCTGTTCCGTTCTATTGGTGGAGGAAGTCATGACCTGCTGTATCAGGAGTTCCTGCCTCTTCTACCCAACCTGCTGCAGGGCTTGAACATGCTGCAGAGTGGCCTCCATAAGCAGCACATGAAGGATCTGTTTGTGGAGCTGTGTCTGACCGTACCTGTGAGGCTGAGCTCTTTGCTTCCCTACCTGCCCATGCTCATGGACCCGCTGGTGTCAGCGCTCAATGGCTCCCAGACACTGGTAAGCCAGGGCCTGCGCACTCTCGAGCTCTGCGTGGACAACCTGCAGCCAGACTTCCTATACGACCACATCCAGCCTGTCCGTGCCGAGCTCATGCAGGCCCTTTGGCGAACTTTGAGGAATCCTGCAGAGACCATCTCTCATGTAGCCTACCGGGTGCTGGGCAAGTTTGGCGGAAGCAACCGGAAGATGCTGAAGGAGTCTCAGAGGCTGCAGTATGTGGTGACTGAGGTGCAGGGCCCCAGCATTAAGGCTGAGTTCACTGACTGCAAAGCCTCTATTCAGCTGCCCATGGAGAAGGCCATAGAGACGGCGCTGGACTGTCTGAAGAGTGCCAACACGGAGCCATATTACAGGCGACAAGCTTGGGAGGTGATCAAATGCTTCCTGGTGGCTATGACCAGCCTGGATGATAACAAACATGCCCTATACCAGCTCCTTGCCCATACAAACTTTACAGAGAAATGGATCCCCAATGTAATCATTTCCCACCGGTACAAGGCCCAGGACACACCTGCACGCAGGACATTTGAACAGGCCCTGACCGGAGCCTTCATGTCTGCAGTCATTAAAGATCTGCGTCCCAGTGCTCTGCCTTTCGTGGCCAGTCTCATCCGCCATTACACCATGGTGGCTGTAGCTCAGCAGTGTGGTCCTTTCCTGCTGCCGTGCTACCAGCTAGGCAGTCAGCCAAGTACTGCTATGTTCCACAGCGAGGAGAATGGCTCTAAGGGAATGGATCCCCTGGTGCTGATCGATGCCATTGCCATCTGCATGGCGTACGAGGAGAAGGAGCTGTGCAAGATCGGCGAAGTCGCACTGGCCGTCATATTTGATGTCGCTAGCATTATCTTGGGATCCAAAGAGAGGGCTTGCCAGCTGCCACTCTTTTCCTACATCGTGGAGCGTCTGTGTGCGTGTTGCTACGAGCAGGCTTGGTATGCCAAGCTTGGTGGAGTGGTGTCTATAAAGTTCCTCATGGAGAGGCTGCCACTTATTTGGGTGCTGCAGAACCAGCTCACCTTCCTCAAGGCTCTGCTGTTTGTTATGATGGATCTCACTGGTGAGGTATCTAATGGTGCAGTGGCAATGGCAAAGACCACCCTGGAGCAGCTTCTGGTGCGCTGTGCAACTCCactgaaggaggaggagaagacaGAGGAGTTGCTCAGTGCACAGGACAAGTCCTTTCACATGGTGACCCACGACCTGGTGCGCGAGGTCACGTCCCCCAACTCCACTGTGCGCAAGCAAGCCATGCACTCGTTGCAGGTTCTGGCCCAGGTTACTGGCAAGAGTGTCACCATCATCATGGAGCCTCACAAAGAGGTTCTTCAGGACATGGTTCCTCCTAAGAAACACCTTCTTCGTCACCAGCCTGCCAATGCTCAGATAGGGCTGATGGAAGGGAACACATTCTGCACCACGCTGCAGCCTCGCCTCTTCACCATGGATCTCAGCGTCGTCGAGCACAAGGTCTTCTACACTGAGTTGTTGAATCTGTGTGAGGCTGAAGATGCAGCACTTATGAAGCTGCCCTGCTACAAGAGTCTGCCTTCTCTGGTGCCCTTGCGCATCGCTGCACTCAATGCTTTGGCAGCCTGTAACTACCTGCCCCAGTCGAGGGAGAAGATTATTGCAGCGCTCTTCAAGGCCCTGAACTCTACCAACAGTGAGCTGCAGGAGGCTGGGGAGGCCTGCATGAGAAAGTTCTTGGAGGGAGCCACCATTGAAGTGGATCAGATCCACACCCACATGCGGCCTCTGCTGATGATGCTGGGAGATTATCGCAGTCTGACTCTAAATGTGGTAAACAGACTCACCTCCGTCACAAGACTCTTCCCCAACTCCTTCAACGACAAGTTCTGTGACCAGATGATGCAACATTTGAGGAAATGGATGGAGGTGGTGGTGCTCACTCATAAAGGAGGCCAGCGCAGTGATGGCAGTGAGATGAAGATCTGCTCAGCCATCATAAACCTCTTTCACCTGATCCCGGCCGCTCCTCAGACTCTGGTCAAACCTCTGTTGGAGGTAGTGATGAAGACTGAGCGAGCCATGCTAATTGAGGCGGGTAGTCCTTTCCGAGAGCCACTCATCAAGTTCCTGACACGTCATCCCTCCCAGACAGTGGAACTGTTCATGATGGAGGCCACGCTGAATGACCCACAGTGGAGCCGCATGTTCATGAGTTTCTTGAAGCACAAAGATGCCAAGCCCCTCCGAGACGTGTTGGCCTCGAACCCGAGCCGCTTTGTCCCCCTTCTAGTTCCGGCAGGTACTCCAGGTACAGTGCGGCCCGGCTCACCCTCCACCAGCACAGCTCGCCTCGACCTGCAGTTCCAGGCCATTAAGATCATAAGCATCATAGTGAAGAATGATGAAGGCTGGCTGGCTGGTCAGCACTCTTTGGTCAGCCAGCTAAGGCGTGTCTGGGTCAGCGAGGCCTTCCAGGAGCGCCACCGTAAAGACAACATGGCTGCTACTAACTGGAAGGAGCCTAAATTGCTGGCCTACTGCCTGCTCAGCTATTGCAAACGTAACTACTCTGAGATCGAGCTGCTGTTCCAGTTGCTGCGAGCCTTCACTGGCCGCTTCCTGTGCAACATGACCTTCCTAAAGGAGTACATGGAGGAAGAGATTCCAAAGAACTACAGCATTGCGCACAAACGAGCGCTCTTCTTCCGCTTCGTGGAATTCAACGACCCGCAGTTTAATGATGAGCTCAAAGCCAAGGTTTTGCAGCACATCCTGCACCCAGCCTTTCTGTACAGCTTTGAGAAAGGGGAAGGGGAGCAGCTCCTGGGCCCTCCCAACCCAGAGGGCGACAACCCCGAGAGCATCACTAGTGTTTTCATCACCAAGGTGCTGGACCCAGAGAAGCAATCTGACCTCCTGGATTCACTGAGGATCAACTTGCTACAGTTCTCCACACTGCTGGTGGAACACGCGCCCCACCACATTCATGACAACAACAAGAGCAGGAACAGCAAACTGAGGCGCCTCATGACCTTCGCCTGGCCCTGTCTGCTACCCAAAGCCTGCGTGGACCCAGCTTGCAAATACAGCGGCCATCTGCTCCTGGCCCACATAATCGCCAAATTTGCCATTCACAAGAAGATTGTCCTGCAGgtGTTCCACAGTCTGTTGAAAGCTCACACTATGGAGGCTCGTGCCATCGTGCGGCAGGCCATGGCTATCCTCACCCCAGCTGTACCCGCCCGCATGGAGGATGGGCATCAGATGCTCACTCACTGGACTCGCAAGATCATTGTGGAGGAGGGCCACACTGTGCCACAGCTGGTCCATATACTGCACCTCATTGTGCAGCACTTCAGGGTTTACTACCCTGTGAGGCATCACCTTGTGCAGCACATGATCAGCGCCATGCAGCGACTTGGCTTCACCCCCAGTGTCACTATCGAGCAGAGGAAGCTGGCTGTGGACCTGGCTGAAGTGGTCATCAAATGGGAGCTTCAGCGGATCAAAGATCAGCAGCCGGAGTCGGAAGCAGACGCAACTGCTGGTGGCGAGGGCACAAGCTCTGGAGCGCTGAAGCGGGGAGCATCTGTGGACTCTGCTCAGGATGTTAAGAGGTTCCGCACAGCTACCGGTGCAGTGGGCACGGTGTTTGGCCGCAGTCAGTCAATGCCTGGCACTGAGGCGCTGCTCACCAAACCTGTAGAGAAGCAGCACACCGACACCGTGGTCAACTTCCTCATCCGCATCGCCTGCCAGGTGAATGACAGCACTAGCGTGGCAGGCTCTCCTGGTGAACTACTCTCCCGCCGCTGCGTGAATTTGATGAAGATGGCCCTCCGGCCAGACATGTGGCCACGTGCTGAGCTCAAACTGCAGTGGTTTGACAAGCTGCTCATGACTGTGGAGCAGCCCAACCAGGCCAACTTCTCAAACATCTGCACAGGGCTGGAGATCCTGAGCTTCCTGCTGACCGTGCTGCAGTCTCCAGCCATCCTGACCCACTTCAAGCCTCTGCAGCGAGGCATTGCAGCCTGCATGACCTGCGGCAACACCAAAGTCCTCCGAGCTGTACACTCTCTGCTCTCCAGACTCATGAGCATCTTCCCCACTGAGCCCAGTACCTCTTCAGTGGCCTCTAAATATGAGGAGTTGGAGTGTTTGTATGCAGCTGTAGGGAAAGTCATTTATGAGGGTCTTACCAATTATGAGAAGGCCACCAGTGCCAACCCCACTCAGCTGTTTGGAACTCTGATGATCCTGAAGTCAGCCTGCAGCTACAACTCCAGCTACATTGACCGCCTCATCTCCGTCTTCATGCGCTCGCTTCAGAAGATGGTACGAGAGCACCTGAGCCCACAGACCAACCCTGGAGCTACAGAGACCAGTGCAGtcacgAGTGAGCTGGTCATGCTGAGTCTGGACCTGGTGAAGACAAGGCTGTCTGTGATGAACATGGAAATGAGGAAGAACTTCATTCAGGTCATTCTCACCTCCCTGATCGAGAAATCGCCTGACCCAAAGGTCCTCCGTGCTGTGGTGAAGATTGTGGAGGAGTGGGTGAAGAACAATTCTCCCATGGCATCCAACCAGATGCCTAATCTCCGAGAGAAGTCCATTCTGCTGGTGAAAATGATGACCTACATTGAGAAGCGGTTTCCTGACGACCTTGAATTAAATGCACAATTTCTGGACCTCGTTAATTACGTCTACAGGGATGAGAGCCTgtcaggaagtgacatcacatcGAAGCTGGAGCCGGCCTTCCTGTCGGGGCTACGCTGTGCTCAGCCGCTAATCAGAGCGAAGTTCTTTGAGGTGTTCGATGCCTCCATGAAGCGACGTGTCTATGAGAGGCTCCTTTACATCTGCTGCTCCCAGAACTGGGAGGCCATGGGCAGTCACTTCTGGATCAAACAGTGCATTGAGCTGCTGTTGGCTGTGTGCGAGAAGGGCACTATCATAGGCACCAGCTGCCAAGGCTCTATGCTGCCCTCCATCACCAATGTCATCAACCTGGCTGACAGCCACGACCGCGCAGCCTTTGCCATGGCCACTCACATCAAACAGGAGCCacgtgagagagagaacagtgaGACCAAAGAAGAGGATGTGGAGATAGACATTGAGCTGGCACCCGGGGATCAGACCAGCCTGCCGAAGACCAAGGAGCAGGCAGAGCGTGACGCCGGCAACCAGCTGCACATGCTCACAAACCGCCATGACAAGTTCCTGGATTCCCTTCGAGAGGTCAAGacGGGAGCGCTGCTGAATGCTCTCGTACAGCTCTGTCACATCTCCACACCATTGGCTGAGAAGACATGGGTGCAGCTTTTCCCTCGTCTCTGGAAGATCCTGTCAGACCGCCAGCAGCATGCCCTGTCTGGGGAGATGGGCCCATTCCTGTGCAGCGGCAGTCACCAGGCTCAGCGAGACTGCCAGCCCAGTGCACTCAACTGCTTTGTGGAGGCCATGTCGCAGTGTGTTCCTCCCATCCCCATCAGGCCCTGTGTGCTCAAGTACCTAGGCAAGACACACAATCTGTGGCTCCGCTCCACCCTCATGCTGGAACAGCAGGCCTTCGAGAAAGGCCTCAGTCTTCACATCAAACCCAAACAGAGCACCGAGTTCTATGAGCAGGAGAGCATCACACCCCCTCAGCAGGAGATCCTGGACTCGCTGGCAGAGCTGTACTCCCTGCTGCAGGAAGAGGACATGTGGGCGGGGCTGTGGCAGAAGCGCTGCAAGTTCCCCGAGACGAGCACAGCCATTGCCTATGAGCAGCATGGCTTCTTTGAGCAGGCACAAGAGAGTTATGAGAAAGCCATGGAGAAAGCCCGCAAAGAGCATGAGAGGACCAACACGTCTCCTGCCATCTTCCCTGAGTACCAGCTATGGGAGGATCACTGGATCCGCTGCTCTAAGGAACTGAACCAGTGGGAGGCGCTGACTGAATACGGCCAGTCCAAAGGCCACACCAACCCATACCTGGTGCTGGAGTGTGCGTGGAGAGTTTCCAACTGGGCTGCCATGAAGGAGGCACTGGTGCAGgtggAACTGAGCTGTCCTAAGGAGATGGCATGGAAGGTGAACATGCACCGTGGGTACTTGGCCATCTGTCACCCAGAGGAGCAGCAACTCAACTTTATTGAGCGCTTGGTGGAGATGGCCAGCAGCCTGGCTATCAGAGAGTGGCGGAGACTGCCTCACATCGTTTCTCATGTCCACACCCCACTGCTGCAGGCTGCCCAACAGATTATTGAGCTGCAGGAGGCTGCTCAGATCAACGTGGGTCTCCAGCCAGCCAACCTGGGCCGCAACACCAGCCTGCATGACATGAAGACTGTAGTGAAGACGTGGAGGAACCGGCTCCCTATTGTATCTGATGACCTGTCACACTGGAGCAGCATCTTCATGTGGCGCCAACACCACTACCAAGCCATTGTGTCAGCTTATGAGAGTAACACACAGCACGATCCCAACACCAACAATGCCATGCTGGGTGTGCACGCGTCAGCTTCTGCCATCATCCAGTATGGCAAGATCGCTCGCAAGCAGGGGCTGGTCAACGTTGCATTGGACATCCTGAGCCGCATCCACACCATCCCCACCGTGCCGATTGTTGACTGCTTTCAGAAAATCCGGCAGCAAGTGAAATGCTATCTGCAGCTGGCAGGAGTGATGGGCAAGAACGAGTGTATGCAGGGGCTTGAGGTGATTGAGTCTACCAATCTCAAGTATTTCACCAAGGAGATGACCGCGGAGTTCTACGCACTCAAGGGCATGTTCTTAGCCCAGATCAATAAATCTGAAGAAGCCAATAAAGCCTTTTCAGCAGCTGTGCAGATGCACGATGTGCTAGTGAAGGCTTGGGCCATGTGGGGCGATTACCTGGAGAACATCTTTGTGAAAGACCGTCAGTTACACCTGGGTGTGTCGGCGATCACATGCTACCTCCACGCTTGCCGCCATCAGAACGAGAGCAAGTCGCGCAAGTACCTAGCCAAGGTATTGTGGCTGCTGAGTTTTGATGATAAGAACACACTGGCAGATGCTGTGGATAAGTATTGCATTGGAGTGCCGCCAATCCAGTGGCTCGCTTGGATCCCTCAACTCCTCACCTGCCTGGTGGGCTCTGAAGGCAAACCTCTTCTCAACCTCATCAGCCAGGTGGGACGTGTCTACCCTCAGGCTGTGTACTTTCCCATCCGAACTCTGTATCTGACACTGAAGATCGAGCAGCGGGAGCGCTACAAGAGTGACTCTGGGCAGCAGCAGCCGAGCTCAGTGGGAGCTCAGAGCCACTCTGCATCAGATCCAGGCCCCATCCGGGCCACGGCACCCATGTGGCGCTGCAGCCGCATCATGCACATGCAGCGAGAGCTGCACCCCACACTCCTCTCATCTCTGGAGGGCATTGTGGACCAGATGGTGTGGTTCCGAGAGAATTGGCATGAGGAGGTACTGCGGCAGCTCCAGCAAGGCTTGGCTAAGTGCCACTCTGTGGCGTTCGAGAAGAGCGGTGCAGTGTCAGATGCTAAgattacaccacacacactgaactttgTGAAGAAGCTGGTGAGCACGTTCGGAGTGGGCTTGGAGAATGTCTCCAACGTCTCCACCATGTTCTCCAGCGCTGCCTCTGAGTCTCTGGCTCGCAGAGCCCAGGCCACTGCCCAGGACCCTGTGTTCCAGAAGATGAAGGGCCAGTTTACCACAGATTTCGACTTCAGTGTACCTGGCTCTATGAAGCTGCACAATCTCATCTCTAAACTAAAGAAATGGATCAAGATTTTGGAAGCCAAGACCAAACAGCTGCCAAAGTTCTTCTTGATTGAGGAGAAATGCCGTTTCCTTAGCAACTTCTCAGCCCAGACAGCCGAAGTGGAGATCCCAGGAGAATTCCTCATGCCCAAGCCCACACACTATTACATCAAGATAGCGAGGTTCATGCCCAGGGTAGAGATCGTTCAGAAGCACAACACTGCTGCCCGCCGCCTGTACATCCGTGGGCACAACGGAAAGATTTACCCATACCTGGTAATGAATGATGCCTGTCTGACAGAGTCACGCAGAGAAGAACGGGTACTGCAGCTCCTACGCCTACTCAACCCCTGCCTGGAGAAGAGGAAGGAGACCACCAAGAGACACCTCTTCTTTACAGTGCCCAGGGTGGTGGCCGTGTCTCCTCAGATGCGCTTGGTGGAGGATAATCCTTCATCCCTCTCACTGGTGGAGATCTACAAACAGCGTTGTGCTAAGAAAGGCATCGAGCATGACAACCCCATCTCCCGCTACTACGACAGATTAGCTACGGTACAGGCCAGAGGAACACAGGCCAGCCATCAGgtGTTGCGGGACATTCTGAAGGAAGTACAGGGCAACATGGTTCCTCGCAGCATGCTGAAGGAATGGGCGCTGCACACCTTCCCCAATGCCACAGACTACTGGACCTTCCGCAAGATGTTCACTATACAGCTGGCTCTTATCGGCCTAGCCGAGTTCATGCTGCACCTCAACCGCCTCAACCCTGAAATGCTACAGATTGCCCAGgACACGGGGAAGCTCAACGTCTCTTACTTCCGCTTTGACATCAATGATGCCACTGGAGATCTGGATGCCAACCGGCCTGTTCCCTTCCGCCTGACACCCAACATCTCAGAGTTTCTAACCACTATCGGTGTGTCCGGCCCTCTCACAGCCTCCATGATTGCTGTCGCCCGCTGCTTCGCCCAGCCCAACTTCAAGGTGGATGGCATTCTGAAGGCAGTACTGAGAGACGAGATCATTGCCTGGCACAAGAAGACCCAAGAGGACACATCAATGCCTCTGTCCCCTGCTGGACAACCGGAGAACATGGACAGCCAGCAGCTGGTGTCACTTGTCCAGAAGGCTGTGACAGCCATCATGACGCGCCTGCACAGCCTGGCTCAGTTTGAGGGTGGAGAGAGTAAAGTGAACACGCTGGTGGCAGCTGCTAACAGTCTGGACAACTTGTGTCGCATGGACCCAGCCTGGCACCCGTGGCTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229700 lncRNA upstream 78276 10350199 ~ 10350620 (+) True G193972
TU229536 lncRNA upstream 92649 10325640 ~ 10336247 (+) True G193828
TU229537 lncRNA upstream 92649 10332906 ~ 10336247 (+) False G193828
TU229541 lncRNA upstream 92649 10332906 ~ 10336247 (+) False G193828
TU229539 lncRNA upstream 98911 10324956 ~ 10329985 (+) False G193828
TU229865 lncRNA downstream 107810 10594229 ~ 10662463 (+) True G194091
TU229853 lncRNA downstream 158519 10644938 ~ 10646453 (+) False msrb1b
TU229857 lncRNA downstream 173459 10659878 ~ 10660950 (+) True G194087
TU229892 lncRNA downstream 224902 10711321 ~ 10712015 (+) True G194113
TU230004 lncRNA downstream 294244 10780663 ~ 10780884 (+) True G194201
XM_026915350.2 mRNA upstream 69689 10355777 ~ 10359207 (+) True bhlha15
XM_026915721.2 mRNA upstream 132373 10290457 ~ 10296523 (+) True rsph10b
XM_026915722.2 mRNA upstream 132373 10290457 ~ 10296523 (+) False rsph10b
XM_026915377.2 mRNA upstream 138480 10280686 ~ 10290416 (+) True pms2
XM_026914923.2 mRNA upstream 174259 10239770 ~ 10254637 (+) True cyth3a
XM_026915305.2 mRNA downstream 45998 10532417 ~ 10564750 (+) True fam20cb
XM_026915794.2 mRNA downstream 81080 10567499 ~ 10569689 (+) True foxl3
XM_026915620.2 mRNA downstream 124996 10611415 ~ 10616737 (+) True noxo1b
XM_026914913.1 mRNA downstream 133615 10620034 ~ 10621503 (+) True rnf151
XM_026914751.2 mRNA downstream 155545 10641964 ~ 10644584 (+) True neurl2
trnal-aag_8 other upstream 364270 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 793829 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 915061 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 916265 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 916656 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 799778 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 1986264 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2996882 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2996882 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 6369351 16855770 ~ 16863495 (+) False anapc16

Expression Profile