RNA id: XM_026915824.2


Basic Information

Item Value
RNA id XM_026915824.2
length 1527
RNA type mRNA
GC content 0.47
exon number 7
gene id nif3l1
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5477331 ~ 5484677 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tacaaaatgtttattcGTCCAATCAGAGTTGGCGTTGTTTAAAAGCCCCGCCCACCCACCGGAAGTGTTAGCAGTGTCACTGCTGGAGCTGACTTCATCCATGTTTACTAGGTCTACGAACATCTCGAGGAGATTCTTCAGGTTGAGCTGCAGCCCGTCTCGGTTTAATGTCATCTCGAACACTGCCCTCAAAAGAAAACCCCACTTCCTGAGAGCAGCCTCTGCAACATTCAATCATTCATCCTGTCTTTATTCCGTGCTGCATTCTTCCATTTGTCATCCATTTTGCACCCCGCCGTTCGTTCTTTCTTCTCGTCCTTACTCTCATCCTCCTTCTTCCATGGATTTAAAGACAGTCCTGGAAGTTCTTGAGCAGCTTGCTCCACTCTCATTGGCTGAATCTTGGGATAATGTTGGTCTCTTGGTGGAACCGAGCAAACAGCGTCCAGTCAAGACGATCCTCCTCACCAATGATCTGACCGCTGACGTTATGGATGAAGCTGAAGGGATGACATGTGACCTCATCATTTCATATCACCCACCTCTTTTCCGGCCTTTCAAACGACTCATTCAGAAAGACTGGAAACAGCAGTTGGCCATCAGAGCTATAGAAAGTGGGGTAGCTGTCTTCTCACCGCATACGTCCTGGGATAGCGTGAAAGGCGGCCTTAATGATTGGTTGATAGAAGGCGTAGGTAGTGGACAAGTGTTGGTGCTAAGCCAGGCTCTCTGTAGTGCCCACAAAAAGCACAGATTGGAGTTTACAGCCAGAAATGAAGAGGAGCTCAATAATATCGTGAAGGAcatgagaaagacagaaaacagcGAAACCTTTCAGTACAATATACTTAGGACTGAACAAGAGGCACAGCATGTGATCCTGAACTGTCCCAGCTCAGAACTGACCTCTGCTGTTCAGGCGATATCAGGAAACGCCACAGCCAGCCAGACTCTCACCATCACGCAGGTCCAGCAGCCCCCTTTACTCGGCTGTGGTCAAGGACGGCATGCTGTGTTGGATGAGCCGATATCCATAGCTGTGGCACTCCAGAGAATGAAGAAACACCTCGGTCTGCCTCACCTTAGACTGGCTCTGGGAAATCAGAAAACATTAGATTCTGTTGTGAAGAgtgtagctgtgtgtgctgGCTCAGGAGCTTCAGTCCTGCAGGGCGTGAAAGCAGACCTCTACATCACCGgtgaGATGTCCCATCACGAGGTGCTGGATGCTGTTTCTAAAGGCACGAGTGTGATTCTGAGTGAGCACAGTAACAGCGAGAGGGGTTTTCTCACTGTGTTTAAGGAGCGGCTATCTGCACACCTACCAGACTCTGTTACCGTAATTATCTCCCAAAAAGACAAAGACCCGCTGCAGGTCATGTGATGTCATTATCTCACgctcattattacattatataacattaaagTTACTCTGCTGAAGTACCAAATCATTGCACCTTTTCAGATATTTAACATTGGATTTCtgaatgatttaaaaagaataaacgTGATCACTATGCAACACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226427 lncRNA upstream 94522 5382597 ~ 5382809 (+) True G191273
TU226421 lncRNA upstream 110973 5366136 ~ 5366358 (+) True G191267
TU226420 lncRNA upstream 113828 5363288 ~ 5363503 (+) True G191266
TU226407 lncRNA upstream 167957 5308219 ~ 5309374 (+) True G191258
TU226403 lncRNA upstream 172422 5303141 ~ 5304909 (+) False gngt2b
TU226475 lncRNA downstream 28014 5512691 ~ 5513155 (+) True G191310
TU226549 lncRNA downstream 112045 5596722 ~ 5667602 (+) True G191375
TU226496 lncRNA downstream 129730 5614407 ~ 5619108 (+) True G191329
TU226560 lncRNA downstream 186337 5671014 ~ 5671252 (+) True G191386
TU226561 lncRNA downstream 187465 5672142 ~ 5672495 (+) True G191387
XM_034309511.1 mRNA upstream 7223 5464205 ~ 5470108 (+) True cabp5a
XM_026915966.2 mRNA upstream 33453 5436259 ~ 5443878 (+) True dcxr
XM_026914576.2 mRNA upstream 42852 5422799 ~ 5434479 (+) True rfng
XM_026914578.2 mRNA upstream 42852 5422799 ~ 5434479 (+) False rfng
XM_026915781.2 mRNA upstream 72525 5383011 ~ 5404806 (+) False col1a1b
XM_026914933.2 mRNA downstream 10229 5494906 ~ 5499745 (+) True tbx6
XM_026914970.2 mRNA downstream 141714 5626391 ~ 5665967 (+) True LOC113527309
XM_026915490.2 mRNA downstream 197364 5682041 ~ 5689581 (+) True mapk7
XM_026915697.2 mRNA downstream 245477 5730154 ~ 5740896 (+) True LOC113527671
XM_026914736.2 mRNA downstream 262196 5746873 ~ 5766384 (+) True mmp25b
TU226411 other upstream 136768 5337253 ~ 5340563 (+) False LOC113527051
TU225934 other upstream 637962 4755097 ~ 4839369 (+) False G190865
TU225847 other upstream 882218 4593107 ~ 4595113 (+) False lrrc18b
trnae-cuc_25 other upstream 1044019 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225438 other upstream 1694836 3782131 ~ 3782495 (+) False rasd1
TU226808 other downstream 485066 5969743 ~ 5983237 (+) True G191581
trnas-gcu_1 other downstream 731168 6215845 ~ 6215926 (+) True trnas-gcu_1
trnal-aag_2 other downstream 731690 6216367 ~ 6216448 (+) True trnal-aag_2
trnal-uag other downstream 738040 6222717 ~ 6222798 (+) True trnal-uag
trnas-gcu_2 other downstream 738859 6223536 ~ 6223617 (+) True trnas-gcu_2

Expression Profile