RNA id: XM_026915843.2


Basic Information

Item Value
RNA id XM_026915843.2
length 3414
RNA type mRNA
GC content 0.45
exon number 9
gene id rhobtb1
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7772344 ~ 7795900 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGATGTCAGTGTGTCCCTCAGGCTGTGGGACACCTTCGGAGACCACCACAAGGATAGGCGCTTTGCCTACGGCAGTTTGACTGTGTGGTGTGGTAGCTGCGTCCATCGCTTGCCCTGTCAGCGAGTGCTGCGCAATTCCTTTGGTGGACGATGACGAAGGGGTGATCATACATTGTTCACTGTTCTTGTGTGGTTGCCGGTGTTCCTCCTGTCAGCATAGACAGTGTACTAACCTCACTCCGAGAAGGTCTGACGTGGTGgttctctgcttttccattgCCAACCCCAACTCCCTCTATCACGTGAAGACCATGTGGTACCTGGAGATCAAACACTTCTGTCCACGTACACCTGTTATTCTGGTTGGGTGTCAACTTGACCTACGCTATGCAGACTTGGAGGCTGTCAACCGGGCCAGACGGCCATTAGCAAGGCCTATAAAACCAGGAGATATTTTGCCTCCAGAGAGAGGACGGGAAGTAGCCAAGGAGTTGGGGATTCCATACTATGAGACAAGCGTCTTTGATCAGTTTGGCATTAAAGATATCTTTGACAATGCTATCCGAGCTGCTCTCATCTCCAGACGCCACCTTCAGTTCTGGAAGTCCCATCTACGGAAGGTCCAGAAGCCCCTCTTGCAGGCACCATTCCTCCCACCAAAAGCTCCTCCACCACTGATCAAGATCCCAGACTGTCCCCGCAACAACCAGGATGGCCCTAGGAAACTGCTGGAGAACCCCTTCTGTGCTGATGTCATGTTCATTGTTCAAGAACACTTCAATGTGTTTGCCCACAAGATCTACCTATCTACCTCATCCTCCAAGTTCTATGACCTGTTCCAGATGGACATCTCAGAAGAGTCCCAGTGCATGGTTGTGACAGAGCATCACAGACGAGAGCACCTGATGCGAACACTCAGCCTGGACACAGATGAAGCCATGGCTGTGCTGACTAACCTATCACCTAGTTCCCTACGGGCTTCCAAGAGTGATGGGACTCTGAAGGTAATGAGCTTTAATGCCAAGCACAACCACAACAAGCTGTCCTTGGCATTTTGGTGCAAGGCCTTCCAGAGCATCCACAAAGAAACTGTGGTTAACCCAGCAACAGGAGCAGCAGCTGTCATGACGGTGGTGAAGATGGACAACTCCATCCAGCTGGGTCCCTTCAGGGCAGTGCTGCGGTTCCTGTACACAGGAGAACTGAATGAAAGGGAGATGGACCTGATGAAGATTGCTCAGATTGCTGAGATCCTAGAAGTTTTTGACCTAAGGATGATGGTGGAGAACATCATGAACAAAGAAGGCTTTATGAATAAGGAAATCACAAAAGCGTTTCATGTGAGAAAAGCCAACAGGATTAAGGAGTGTCTTGCCAAGAACAGCTTCACAGATGTGGTGTTTAGGTTGGATGATGGCACCATCAATGCCCATAAGCCTTTGCTGATCTCCAGTTGTGATTGGATGGCTGCCCTGTTTGGAGGCTCATTCATAGAGAGTGCGAATAATGAGGTCTCTTTTCCTAACACCAGCAGGGCGTGTATGCAGGCAGTGCTGGAGTATCTCTACACCAATCAGCTGTCACCCATGGCTGATTTGGACCCAATGGAATTAATTGCTCTGGCAAACAGACTGTGCCTTCCCCGCCTCATTGCCCTGACAGAGCAATATGCTGTGAGTGAGCTGGTGAAAGCCTCTAGGGATGCACAAGACATAGACGGCGAGGTTCTCAACTACCTGGAGCTTGCTCAGTTCCATAATGCCAACCAACTTTCTGCTTGGTGCTTGCATCACATATGCACTCATTATAATAACATCTGTGCCAATTATCGCAAAGAGATCAAGTCCAAATCGCTAGAAAACCAAGAGTACTTTGAGAAGCATCGCTGGCCTCCGGTTTGGTACCTGAAGGAGGAAGATCACTACCAGCGGgtgaagaaagagagggagaaggaagACGTGGTCCTGAACAAACACCTCTCTCGCCGTCGCTGGTGTTTCTGGAGCACTTCTCCTGCAGTGTCctgagagaaagcgagagagagatggcacTTCCTTTCCTGCTAACTGCTAGCCATTTTCTGTCTTAACCTACAATGATATATCTGGAAATGCACTGAAATCTTTTCTTTTGGACTTACACCCAGTAAGTCAAGCAGACATCCAAACGGTTCAAAGCACAATCTACAATCTGCATCCACAGAATACAGGCCATCAAATGTAGTAATGCTCAACCAGTGAACAAAAGTGTATTCTCTGGTTGTAaagtttgtaagaaaaaaaaagaaagggatgaagaaaaaaaaaactacacctAGGCATAACTAATTTCTAATATTCCCTTGATTTCTGTTTCCTTCTAGTTCTAAGTACAAAGGATTTCTGCAGCTTATAAAAATGCTCAGTTTTGTTCTGCTAACAACCACAAACTCGAAGCTGACTTGAATAGTGACTTTAGAATTGGCATTTTAGAATAATTACGATCACTCTACATCCTGAGGAAAAAATGGCGTTTACGACTCGGTGTGTGGCAGGATCCGTGTGTGCTGTACACTAAACAGCAGCTTCCTTTGACACCAGCCCTAATAAGAAACATCAGGTACATCAATGCAGTTACTTATCCGCTGTATGTTATGAGGGCCCAAAGGCACCATTTACTTTTGTAGTGCCAGGGAATACCATAGCTCACCTAGCTAGTCCtgtaattctgtgtaaacatttatggttgaataaaacattaactCTTATTATTAGAAGGGCTTAGCACTATGGCTTAGTTCAGGGCTTACTTGAAACCAAGAAGCAAAACAATCAATAACCATTGATCACATATACTATCTTCACCGTGATTGTGCTAGGTGTTAGATGTAGGCTTACTATAGTGGATTTGAACTTTATACTTTACACATCAATGATTGTTATAGTCATTAAAGGGTTAAGAAATTCTTAGGTGAATGTAAATGAGCAATAAGCTGAAAGTGCAGGCTTTTGCTTTCAGGTGATTCTGTTGTGTGTAAGTAGTGTTGGTCAGGATAGATGATATGTACTCTATGTGGGTGCTTGTATATGATGCACCACCTCATTATTACCATATTCCGATCCAGGCAGGTCACAATGACACCGAAGGGAAACTTAAtacttgaaaaataaaatgattctgtcTTTAGCCATGTAGGCTTGTCTTTAGTTCAGCAAAATATTAAGTAGCTGATGCTCACTAGTGATTGTTCTTTTTCTGGCAGATTCAGTGTTAATTGTTATTAGCTGCTGCAAACCAAGTGGCTGGTTCATTTGGTACTTGGCCTTTGATTTCTCTCTTCATCACCCTTAATGCTggctgtttatttatgtatttatttattttttaaacagaatattGTTTGGTGAATTACAATAAATGATCAATTTACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227775 lncRNA upstream 307752 7474437 ~ 7475004 (+) True G192422
TU227745 lncRNA upstream 383128 7399343 ~ 7399628 (+) True G192394
TU227373 lncRNA upstream 997160 6778164 ~ 6785596 (+) True G192043
TU227359 lncRNA upstream 1054365 6725985 ~ 6728391 (+) True LOC113527389
TU227354 lncRNA upstream 1085786 6696732 ~ 6696970 (+) True G192029
TU228011 lncRNA downstream 143141 7939041 ~ 7939584 (+) True G192591
TU228075 lncRNA downstream 273243 8069143 ~ 8071592 (+) True G192650
TU228069 lncRNA downstream 330873 8126773 ~ 8141060 (+) True G192644
XR_004579326.1 lncRNA downstream 463314 8259214 ~ 8261423 (+) True LOC117598703
TU228175 lncRNA downstream 473248 8269148 ~ 8270226 (+) True G192716
XM_026914934.2 mRNA upstream 235349 7526588 ~ 7547407 (+) False phyhiplb
XM_026914935.2 mRNA upstream 235349 7529611 ~ 7547407 (+) True phyhiplb
XM_034309453.1 mRNA upstream 268687 7447518 ~ 7514069 (+) True bicc1b
XM_034309438.1 mRNA upstream 347020 7428545 ~ 7435736 (+) False tfam
XM_026915648.2 mRNA upstream 759118 7021923 ~ 7023638 (+) True dkk1b
XM_026914774.2 mRNA downstream 16550 7812450 ~ 7838426 (+) True cabcoco1
XM_026915042.2 mRNA downstream 56511 7852411 ~ 7938614 (+) True arid5b
XM_026914661.2 mRNA downstream 178319 7974219 ~ 7977168 (+) True adoa
XM_026915712.2 mRNA downstream 215964 8011864 ~ 8019214 (+) True nrbf2b
XM_026915094.2 mRNA downstream 353379 8149279 ~ 8177199 (+) True reep3b
TU227843 other upstream 154645 7605981 ~ 7628111 (+) True G192484
TU227741 other upstream 346384 7428579 ~ 7436372 (+) True tfam
XR_003402840.2 other upstream 948499 6822740 ~ 6834257 (+) False asah2
trnap-cgg_7 other upstream 992811 6789874 ~ 6789945 (+) True trnap-cgg_7
trnap-ugg_20 other upstream 993990 6788695 ~ 6788766 (+) True trnap-ugg_20
trnaa-ugc_7 other downstream 1311786 9107686 ~ 9107757 (+) True trnaa-ugc_7
trnal-aag_6 other downstream 1311952 9107852 ~ 9107933 (+) True trnal-aag_6
trnad-guc_4 other downstream 1468874 9264774 ~ 9264845 (+) True trnad-guc_4
trnad-guc_5 other downstream 1470363 9266263 ~ 9266334 (+) True trnad-guc_5
TU228915 other downstream 1472742 9268642 ~ 9271331 (+) False LOC113527534

Expression Profile