RNA id: XM_026915883.2


Basic Information

Item Value
RNA id XM_026915883.2
length 4902
RNA type mRNA
GC content 0.45
exon number 6
gene id tbx21
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12348960 ~ 12360643 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agtgatgcactgttatttatattacagtaatgtacccagtacaatgaaataaatcaagaaaCACCGATATGTTAGGCATGTCCGACATGAGACGGGTCTTATTTTGGCCGTAAAAGAGACAGGAGCAGTTCTCAGAAGTCGGAAGCTTGTGTTAGAGAGAGCCAGAAAGCGCTTCATTTTGCTTTCTTTGCCATTAAAGATTTCAGTGGAGCTTGTTTATTTGAGTAGGTAAAGAAAGTAAGCTGTAAACCTATGATCCTGCACGTTAGCGCGGAGCGAGCCTGCAGATGGGCGGCATAGGCGGCAGCTTCTGTATCAACATGCTCAATGGAAGCGAGGCGCAAAGTTTGGCCAAAGACGCAGAGACGAGCGGTCACCTTCACCGGAGCAAGGAGCTAGCGGACTTCAAAATGGGCGTCCAAGACGCGAGGTTGTACTATTCAGACTCACTTCCAAATGGCCAGGACAACTTTTCGCTGCCGTACCACGGCGAGCAGAGCGCTGGAGAACTCGGAGCGCAGGCGGGAAGGTTTTACTccgcggcggcggcggcggcggcagcAGCGGCAGCGGCTCCGCTCGGTAACTGTGCGTTCAGCCGCAGCAGCGCGGCCCAGGCTTacgcaggggctgatgggtattCACCGGACAGTAAAGACGGCTACTCGGCCAGCGCGGACTCGTATCACGCGCACTTTCAGCATGGCTACCCGCGCGCGCCTCTCTATTCCTTACCTGGCCTACAGGTGTGCGGCAAGACGCAGGTGCTCCTCAACAACTACCCGCTGTGGGCCAAGTTTCACAAGTACCAAACCGAGATGATCATCACCAAACAGGGCAGGAGGATGTTCCCGTTTCTCAGTTTTAATATCAGTGCTCTGGACCCCTCGGCTCACTACAACGTGTACGTGGATGTGGTTCTGGCTGACCAGCACCACTGGAGGTACCAGGGAGGCAAGTGGGTGCAGTGTGGCAAAGCAGAGGGCAGCATGCCAGgaaATAGGATGTATATGCATCCTGACTCTCCTAACACAGGGAATCACTGGATGAGGCAGGAGGTCTCATTTGGCAAGCTCAAACTCACCAACAACAAGGGCAGCTCCAACAACATGGCACAGATGATAGTGCTGCAGTCTCTCCACAAGTACCAGCCACGCTTGCATATCATGGAAGTGAAGGAGGATGGAACAGAAGATCCCTTCCGCAGTTGTAAGGCGCAAACCTTTATCTTCCCCGAGACCCAGTTCATTGCAGTCACTGCCTACCAGAATGCAGACATCACTCAGCTGAAAATAGACCATAACCCTTTTGCGAAAGGTTTCCGGGACAATTATGACACATTGTATGCCCCGCCTGACTCGGATCGTATCACCCCCTCCCCCACTGAGGGCCAACAGCTCATGGCAGCCAGCTGCTATCCCCGTCAGCCTTACCTGGCCGAGCAGTACATGAGTCCACTGCAGCACGGTCGCTTTTACAGCTGCGAGCCTGTCAGCATGGCACAGGGGTGCCCCAAAGACCCAAATGGCAGTCACCATGGGCGCTGGTACCTACCTGGCCAGCAGGGCACGCCCTCCAATCTACTGGACTTCAGCTCTTACGAAGGTGACTATACGGCCAACAGCCTCTACAAGCCCTTTCCTTTACAGACATCACCCCACCACCCGTTGAGCTACTATCCTGAAAACCCCTTCACTTCTGGGCCAATATCAAGTGCTAGCCCTGCCACATGGAGCACAGCAAGACCTTCACCACAGTACCTCAGCCACTCCCACCCTGGGAAAGCTACATCTAGCTTGAGTTGGTTCCGCCCCATGTCTTCTTCCGCCATGTCCTCATCTCCTCCAGCAGTAAATTCCCGCCTTCACCCTTCTCCATCACTCCTTGAGTCCTTGAGGCTGCCGGTACTACAGGACAAGCCAAAAGAGGTGGTGGAGGACACGTGGATGGAGACCCCCTCTGTGAAATCAGTAGACTCGGTCGACTCTGGACTTTTCGAGGGCGCAGAAAGCAAGAAAAGACGAGTGTCACCCTACGCCTCCAGCACTGAGAACTCTCCTCCCATTCGAAGCAGCGAAGCCTGTGAGAAGGACAACAGCAGCGATGCGGGCTACTATGGCTTCTACAGTCACTGAGAGCCATCGTATCTGAGTTAGTGTAGCACTCCTGCTGTGTCCCACCCACAGAGCTGCACTCCCTTCTGGGACAAAGCTCTGTGGGAATCTAGGGGAGGGACAACAGAGGCCAGTAACAGCTAACACAGAACTCTCAATCATTTTTCCTTCATAGCCCTGGTGCTATTTGCTTTTTATACCTACAGTGTTATTGCTGGCCCTCTCATGTTTGGTGTGCTGCTTCCTCATGGTAGCGCTGTATGGGTAAGGTCAGGTGGAGGCACTCCACTCATCCTGAAGGTCACTGTCATGGTGAGGACTGGTGAGTCAAGATAATGTGACTGGGCTGAAACATTGGCCTGGAGatatatgcatgcacacacacagacctggaTGAATTCAGAAACTGTTTAGCATTTAAAGAAGTCTGCACACCTGCTGACACTCCCCTCAAGGACCTGTCCAGTCTCCCAGTtctcccagacacacacacacacacacacacacatttattaggTGGGAAGTTTTTCCTCAAGAATATAGTTATGTACTTTTGAGTATATACTTATGTTTGATGATTCCAGTTCATTCACATTTTCACTACTCCAAATGAGCCTTTGAGTGTCCAATGATATAAGTTGATGTAAATGATTGATAAGTGCTATTAGAGGAAACATAGTATTTCTATCTGCATGGAAAGGTCAGAACGTGTTCCACTCATCCTGTCAGCTGTCTTCCTGTCAACCTCCCATTCTCTCTACTAAATCGCCCTAACTAGATCATGTGCCAAACAGGGGCTGGCTCTAATTTCATTTTGTTCCATATGCCTCAGTACCACTGTATTGTACATTAATGAAGTAAATGTAATGGTTCTGCTTTAAATTAAGCTTTGCTGAACTTTGGATTCGTACATGATGAATTGCAGTACAAATCAGGTGTTACAGTATTTATTCGgtcaacacaaacacagcaatgTCAGACTGATTAGCATCAAAAGAACATTCTTAACCCAACATCAGCAAGTCTCACAAATAGGACAAGAAAGACAACATGCAGATAGACAGGGTGGGAAAATGGACACCTGGAAGGGGCATTGTGGTGACTGGACATCATAATCAGACAACAGCAGACGAACGAGACCTCAGTCTCACCTTATCAGGGCCTGCAGACCTCCAAAGGTGAGAATGACCTTCGACAGCTCAGTGGGCGACAGCCATAAGAATGTTAACACGCTGACTGTGGAGGCAAACGCACAATACAGGACATGGTTCACCTTTCAGAATTTAGACACATTTCGTTGGTCGTCGGCTAATGTGATCTTTCAGTGAACTGCGTATTAAAGTACTTCCCACAACAACATATTTTACGATAACACATAACGGTCCAGTACACACATGTGCgtatatgcacatgcacacacaaagaggggcgacacaatttttttttttattattatttatatcttGTTTAAGCAAACTGTAAACAATTCTGTAATAAGACTGCACTTACTTAGTATGTACACtgttaaaaatagaaatgcTTACAATATGACTTTTTATGAAATTGTTGTTATATTCTGTACTGTCAGTATTTTATAGAGCTTCCCAAAAACCTGTATAGTGGAATATCAAAGCTTCAGTATGTGGTCAGTGACTTTCAAACCAGGGAGTTTGGATTTGCTTACCTTAACATGGGAGCAGtgtatttatttcagtgctaAACCAAATTACATATTAGCAATACAATGAAGAGGACAATCACAGTGAGATTTCATATTGCTACTGCTCTGTTAGAAACATATTGTTAGATATTACTCAGGTCAAGCATGTGCCAATGAATATTCAGCTCCATTTGTGTAAGTAATGGATATGTGGAAAATTAATACTGATTTAAAATAACAggattttgtttattgtttccTGGTTCTAAGTAGTAAGGTGCAAACAATTGATAGGTATGAGCTAAACTGGAAGTTATTTTTGGTAAACTGTTTCTAATTTCAAGTGCaatttaaaaagtgttcataTTAATTTAAGAGAACTGTAATtacctttttttattcttgaacaATTCTTGAATATGCATTCAAACCATCGTTTGAATATTTTACGAACACTGAGGATACAGGTGTATAGTATTGTTAGGATATTTGGTAGGATATGTTTTAGGTGACCCCTAGTGGACGATCTCCTAATTCAGTTATAATAATGGCCACTATTTATcaaagtttccaaaaaaaaagggagcAAATTTGTGTGCACAGAATGATATATGAAGAAATATACATCTGATTCATGAAACTGTAATAGGACATCAAAATGAGTGGTTAGGCTGAAGTGATGAATCAGTTTTGGCTGTTCGACATAACAGTCCCTGCCCACTAGTCCCTTATTTACATGCTATATGCATACAGCATACCCCAGTTTACCCTCAAATACATCTATGTACAACTTTGCTCATATGAAACTCTGATGAATAATGCCTTATGTGTGAGGGAATTTACCATCAAGCTGTCCCGTCtccaaagcttttttttatggACTAGCAGTGCTATTATCAGATTAACTTTAAGGTATATTTATATGATGTTCCACTGAACCATGAGTTTAACAATCTTATCTGTGAATGAAAAACATACTCTGtaatatgaaaattaaatattttccaatGTCAACTTAAAGCCAAGGTTCCTAAATAACAGGAACCTTTCCCCAAATAATGCAGACAAACTGTACAGACTGAAATCATGTATTTGATTTGTtctaactgtaataaaacatatatgtca

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231012 lncRNA upstream 99205 12249060 ~ 12249755 (+) True G195047
TU230980 lncRNA upstream 172841 12174394 ~ 12176119 (+) True G195016
TU230966 lncRNA upstream 203753 12145001 ~ 12145207 (+) True G195002
TU230950 lncRNA upstream 208740 12140012 ~ 12140220 (+) True G194989
TU230784 lncRNA upstream 285462 12062835 ~ 12063498 (+) False LOC113527436
TU231048 lncRNA downstream 10413 12371056 ~ 12371285 (+) True G195083
TU231049 lncRNA downstream 13367 12374010 ~ 12374280 (+) True G195084
XR_004579205.1 lncRNA downstream 91250 12451893 ~ 12453678 (+) True LOC117598562
TU231214 lncRNA downstream 189491 12550134 ~ 12550360 (+) True G195225
TU231292 lncRNA downstream 282625 12643268 ~ 12643526 (+) True G195287
XM_026915940.2 mRNA upstream 31856 12269685 ~ 12317104 (+) True tbkbp1
XM_026914596.2 mRNA upstream 163922 12179023 ~ 12185038 (+) True cdk5r1b
XM_026915677.2 mRNA upstream 206217 12141560 ~ 12142743 (+) True LOC113527660
XM_026915249.2 mRNA upstream 263601 12062808 ~ 12085359 (+) False LOC113527436
XM_026915356.2 mRNA downstream 17835 12378478 ~ 12383567 (+) True pnpo
XM_034309096.1 mRNA downstream 18146 12378789 ~ 12383567 (+) False pnpo
XM_026914609.2 mRNA downstream 30150 12390793 ~ 12398133 (+) True cdk5rap3
XM_026914825.2 mRNA downstream 46710 12407353 ~ 12415790 (+) False nfe2l1b
XM_026914827.2 mRNA downstream 46710 12407353 ~ 12415790 (+) False nfe2l1b
trnaq-cug_16 other upstream 1062692 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 2284334 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 2713893 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2835125 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2836329 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 112040 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1122658 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1122658 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 4495127 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5216640 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile